Staphylococcus pseudolugdunensis sp. nov., a pyrrolidonyl arylamidase/ornithine decarboxylase-positive bacterium isolated from blood cultures

Diagnostic Microbiology and Infectious Disease

Volumn 60, Issue 4, 2008, Pages 351-359

  Tang, Yi Wei ^a   Han, Jian ^b   McCormac, Melinda A ^a   Li, Haijing ^a   Stratton, Charles W ^a  

^a VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

^b QIAGEN North America   (United States)

Author keywords

Blood culture; Identification; Staphylococcus pseudolugdunensis sp. nov.

Indexed keywords

DNA 16S; ELONGATION FACTOR TU; NUCLEOTIDE; ORNITHINE DECARBOXYLASE; PYRROLE DERIVATIVE; PYRROLIDONYLAMIDASE; UNCLASSIFIED DRUG; VANCOMYCIN;

ADULT; AGED; ARTICLE; ASEPTIC MENINGITIS; ASPIRATION PNEUMONIA; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOCHEMISTRY; BLOOD CULTURE; CHEMICAL REACTION; CHRONIC MYELOID LEUKEMIA; CONTROLLED STUDY; DIAGNOSTIC ACCURACY; FEMALE; GENE SEGREGATION; HUMAN; INJURY; KOCURIA VARIANS; MALE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROBABILITY; PYOMYOSITIS; RNA TRANSLATION; ROSEA; STAPHYLOCOCCUS; STAPHYLOCOCCUS EPIDERMIDIS; STAPHYLOCOCCUS HAEMOLYTICUS; STAPHYLOCOCCUS LUGDUNENSIS; STAPHYLOCOCCUS PETTENKOFERI; STAPHYLOCOCCUS PSEUDOLUGDUNENSIS; STAPHYLOCOCCUS SAPROPHYTICUS; TUF GENE;

ADULT; AGED; AGED, 80 AND OVER; AMINO ACID NAPHTHYLAMIDASES; BACTEREMIA; BACTERIAL TYPING TECHNIQUES; BLOOD; COAGULASE; DNA, BACTERIAL; DNA, RIBOSOMAL; ELECTROPHORESIS, GEL, PULSED-FIELD; FEMALE; HUMANS; MALE; MICROBIAL SENSITIVITY TESTS; MIDDLE AGED; MOLECULAR SEQUENCE DATA; ORNITHINE DECARBOXYLASE; PEPTIDE ELONGATION FACTOR TU; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; STAPHYLOCOCCAL SKIN INFECTIONS; STAPHYLOCOCCUS;

EID: 40749105698     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2007.11.005     Document Type: Article

References (39)

1. Baba T., Takeuchi F., Kuroda M., Yuzawa H., Aoki K., Oguchi A., Nagai Y., Iwama N., Asano K., Naimi T., Kuroda H., Cui L., Yamamoto K., and Hiramatsu K. Genome and virulence determinants of high virulence community-acquired MRSA. Lancet 359 (2002) 1819-1827
2. Bates D.W., Goldman L., and Lee T.H. Contaminant blood cultures and resource utilization. The true consequences of false-positive results. JAMA 265 (1991) 365-369
3. Brun Y., Fleurette J., and Forey F. Micromethod for biochemical identification of coagulase negative staphylococci. J. Clin. Microbiol. 8 (1990) 503-508
4. Castro J.G., and Dowdy L. Septic shock caused by Staphylococcus lugdunensis. Clin. Infect. Dis. 28 (1999) 681-682
5. Chapin K., and Musgnug M. Evaluation of three rapid methods for the direct identification of Staphylococcus aureus from positive blood cultures. J. Clin. Microbiol. 41 (2003) 4324-4327
6. CLSI. Performance Standards for Antimicrobial Disk Susceptibility Tests; Approved Standard (2006), Clinical and Laboratory Standards Institute, Wayne, PA
7. De Paulis A.N., Predari S.C., Chazarreta C.D., and Santoianni J.E. Five-test simple scheme for species-level identification of clinically significant coagulase-negative staphylococci. J. Clin. Microbiol. 41 (2003) 1219-1224
8. Deresinski S. Methicillin-resistant Staphylococcus aureus: an evolutionary, epidemiologic, and therapeutic odyssey. Clin. Infect. Dis. 40 (2005) 562-573
9. Diep B.A., Gill S.R., Chang R.F., Phan T.H., Chen J.H., Davidson M.G., Lin F., Lin J., Carleton H.A., Mongodin E.F., Sensabaugh G.F., and Perdreau-Remington F. Complete genome sequence of USA300 an epidemic clone of community-acquired methicillin-resistant Staphylococcus aureus. Lancet 367 (2006) 731-739
10. Freney J., Brun Y., Bes M., Meugnier H., Grimont F., Grimont P.A., Nervi C., and Fleurette J. Staphylococcus lugdunensis sp. nov., two species from human clinical specimens. Int. J. Syst. Bacteriol. 38 (1988) 168-172
11. Gemmell C.G., and Dawson J.E. Identification of coagulase-negative staphylococci with the API staph system. J. Clin. Microbiol. 16 (1982) 874-877
12. Gill S.R., Fouts D.E., Archer G.L., Mongodin E.F., Deboy R.T., Ravel J., Paulsen I.T., Kolonay J.F., Brinkac L., Beanan M., Dodson R.J., Daugherty S.C., Madupu R., Angiuoli S.V., Durkin A.S., Haft D.H., Vamathevan J., Khouri H., Utterback T., Lee C., Dimitrov G., Jiang L., Qin H., Weidman J., Tran K., Kang K., Hance I.R., Nelson K.E., and Fraser C.M. Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain. J. Bacteriol. 187 (2005) 2426-2438
13. Heikens E., Fleer A., Paauw A., Florijn A., and Fluit A.C. Comparison of genotypic and phenotypic methods for species-level identification of clinical isolates of coagulase-negative staphylococci. J. Clin. Microbiol. 43 (2005) 2286-2290
14. Herwaldt L.A., Geiss M., Kao C., and Pfaller M.A. The positive predictive value of isolating coagulase-negative staphylococci from blood cultures. Clin. Infect. Dis. 22 (1996) 14-20
15. Holden M.T., Feil E.J., Lindsay J.A., Peacock S.J., Day N.P., Enright M.C., Foster T.J., Moore C.E., Hurst L., Atkin R., Barron A., Bason N., Bentley S.D., Chillingworth C., Chillingworth T., Churcher C., Clark L., Corton C., Cronin A., Doggett J., Dowd L., Feltwell T., Hance Z., Harris B., Hauser H., Holroyd S., Jagels K., James K.D., Lennard N., Line A., Mayes R., Moule S., Mungall K., Ormond D., Quail M.A., Rabbinowitsch E., Rutherford K., Sanders M., Sharp S., Simmonds M., Stevens K., Whitehead S., Barrell B.G., Spratt B.G., and Parkhill J. Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 9786-9791
16. Kloos W.E., and Bannerman T.L. Staphylococcus and Micrococcus. In: Murray P.R., Baron E.J., Pfaller M.A., Tenover F.C., and Tolken R.H. (Eds). Manual of clinical microbiology (1995), American Society for Microbiology Press, Washington, DC 282-298
17. Kloos W.E., and Schleifer K.H. Simplified scheme for routine identification of human Staphylococcus species. J. Clin. Microbiol. 1 (1975) 82-88
18. Kontos F., Petinaki E., Spiliopoulou I., Maniati M., and Maniatis A.N. Evaluation of a novel method based on PCR restriction fragment length polymorphism analysis of the tuf gene for the identification of Staphylococcus species. J. Microbiol. Methods 55 (2003) 465-469
19. Kuroda M., Ohta T., Uchiyama I., Baba T., Yuzawa H., Kobayashi I., Cui L., Oguchi A., Aoki K., Nagai Y., Lian J., Ito T., Kanamori M., Matsumaru H., Maruyama A., Murakami H., Hosoyama A., Mizutani-Ui Y., Takahashi N.K., Sawano T., Inoue R., Kaito C., Sekimizu K., Hirakawa H., Kuhara S., Goto S., Yabuzaki J., Kanehisa M., Yamashita A., Oshima K., Furuya K., Yoshino C., Shiba T., Hattori M., Ogasawara N., Hayashi H., and Hiramatsu K. Whole genome sequencing of methicillin-resistant Staphylococcus aureus. Lancet 357 (2001) 1225-1240
20. Kuroda M., Yamashita A., Hirakawa H., Kumano M., Morikawa K., Higashide M., Maruyama A., Inose Y., Matoba K., Toh H., Kuhara S., Hattori M., and Ohta T. Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 13272-13277
21. Layer F., Ghebremedhin B., Moder K.A., Konig W., and Konig B. Comparative study using various methods for identification of Staphylococcus species in clinical specimens. J. Clin. Microbiol. 44 (2006) 2824-2830
22. Loiez C., Wallet F., Pischedda P., Renaux E., Senneville E., Mehdi N., and Courcol R.J. First case of osteomyelitis caused by "Staphylococcus pettenkoferi". J. Clin. Microbiol. 45 (2007) 1069-1071
23. Martineau F., Picard F.J., Ke D., Paradis S., Roy P.H., Ouellette M., and Bergeron M.G. Development of a PCR assay for identification of staphylococci at genus and species levels. J. Clin. Microbiol. 39 (2001) 2541-2547
24. Pareja J., Gupta K., and Koziel H. The toxic shock syndrome and Staphylococcus lugdunensis bacteremia. Ann. Intern. Med. 128 (1998) 603-604
25. Patel R., Piper K.E., Rouse M.S., Uhl J.R., Cockerill III F.R., and Steckelberg J.M. Frequency of isolation of Staphylococcus lugdunensis among staphylococcal isolates causing endocarditis: a 20-year experience. J. Clin. Microbiol. 38 (2000) 4262-4263
26. Paulsen I.T., Banerjei L., Myers G.S., Nelson K.E., Seshadri R., Read T.D., Fouts D.E., Eisen J.A., Gill S.R., Heidelberg J.F., Tettelin H., Dodson R.J., Umayam L., Brinkac L., Beanan M., Daugherty S., DeBoy R.T., Durkin S., Kolonay J., Madupu R., Nelson W., Vamathevan J., Tran B., Upton J., Hansen T., Shetty J., Khouri H., Utterback T., Radune D., Ketchum K.A., Dougherty B.A., and Fraser C.M. Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299 (2003) 2071-2074
27. Personne P., Bes M., Lina G., Vandenesch F., Brun Y., and Etienne J. Comparative performances of six agglutination kits assessed by using typical and atypical strains of Staphylococcus aureus. J. Clin. Microbiol. 35 (1997) 1138-1140
28. Schnitzler N., Meilicke R., Conrads G., Frank D., and Haase G. Staphylococcus lugdunensis: report of a case of peritonitis and an easy-to-perform screening strategy. J. Clin. Microbiol. 36 (1998) 812-813
29. Seenivasan M.H., and Yu V.L. Staphylococcus lugdunensis endocarditis-the hidden peril of coagulase-negative Staphylococcus in blood cultures. Eur. J. Clin. Microbiol. Infect. Dis. 22 (2003) 489-491
30. Souvenir D., Anderson D.E., Palpant S., Mroch H., Askin S., Anderson J., Claridge J., Eiland J., Malone C., Garrison M.W., Watson P., and Campbell D.M. Blood cultures positive for coagulase-negative staphylococci: antisepsis, pseudobacteremia, and therapy of patients. J. Clin. Microbiol. 36 (1998) 1923-1926
31. Takeuchi F., Watanabe S., Baba T., Yuzawa H., Ito T., Morimoto Y., Kuroda M., Cui L., Takahashi M., Ankai A., Baba S., Fukui S., Lee J.C., and Hiramatsu K. Whole-genome sequencing of Staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species. J. Bacteriol. 187 (2005) 7292-7308
32. Tang Y.W., Ellis N.M., Hopkins M.K., Smith D.H., Dodge D.E., and Persing D.H. Comparison of phenotypic and genotypic techniques for identification of unusual aerobic pathogenic gram-negative bacilli. J. Clin. Microbiol. 36 (1998) 3674-3679
33. Tang Y.W., Hopkins M.K., Kolbert C.P., Hartley P.A., Severance P.J., and Persing D.H. Bordetella holmesii-like organisms associated with septicemia, endocarditis, and respiratory failure. Clin. Infect. Dis. 26 (1998) 389-392
34. Tang Y.W., Kilic A., Yang Q., McAllister S.K., Li H., Miller R.S., McCormac M., Tracy K.D., Stratton C.W., Han J., and Limbago B. StaphPlex system for rapid and simultaneous identification, antibiotic resistance determinants and Panton-Valentine leukocidin detection of staphylococci from positive blood cultures. J. Clin. Microbiol. 45 (2007) 1867-1873
35. Tang Y.W., Von Graevenitz A., Waddington M.G., Hopkins M.K., Smith D.H., Li H., Kolbert C.P., Montgomery S.O., and Persing D.H. Identification of coryneform bacterial isolates by ribosomal DNA sequence analysis. J. Clin. Microbiol. 38 (2000) 1676-1678
36. Tang Y.W., Waddington M.G., Smith D.H., Manahan J.M., Kohner P.C., Highsmith L.M., Li H., Cockerill III F.R., Thompson R.L., Montgomery S.O., and Persing D.H. Comparison of protein A gene sequencing with pulsed-field gel electrophoresis and epidemiologic data for molecular typing of methicillin-resistant Staphylococcus aureus. J. Clin. Microbiol. 38 (2000) 1347-1351
37. Trulzsch K., Rinder H., Trcek J., Bader L., Wilhelm U., and Heesemann J. "Staphylococcus pettenkoferi," a novel staphylococcal species isolated from clinical specimens. Diagn. Microbiol. Infect. Dis. 43 (2002) 175-182
38. Vandenesch F., Etienne J., Reverdy M.E., and Eykyn S.J. Endocarditis due to Staphylococcus lugdunensis: report of 11 cases and review. Clin. Infect. Dis. 17 (1993) 871-876
39. Zhang Y.Q., Ren S.X., Li H.L., Wang Y.X., Fu G., Yang J., Qin Z.Q., Miao Y.G., Wang W.Y., Chen R.S., Shen Y., Chen Z., Yuan Z.H., Zhao G.P., Qu D., Danchin A., and Wen Y.M. Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). Mol. Microbiol. 49 (2003) 1577-1593