System-wide peripheral biomarker discovery using information theory

Pacific Symposium on Biocomputing 2008, PSB 2008

Volumn , Issue , 2008, Pages 231-242

  Alterovitz, Gil ^a,b,c,d   Xiang, Michael ^a   Liu, Jonathan ^e   Chang, Amelia ^e   Ramoni, Marco F ^a,b  

^a HARVARD UNIVERSITY   (United States)

^b BOSTON CHILDREN S HOSPITAL   (United States)

^c Department of Electrical Engineering and Computer Science   (United States)

^d HARVARD MEDICAL SCHOOL   (United States)

^e MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-MARKER DISCOVERY; BIOFLUIDS; BIOLOGICAL INFORMATION; BIOMEDICAL INVESTIGATIONS; CLINICAL DIAGNOSIS; DISEASE SCREENING; FUNCTIONAL INFORMATION; FUNCTIONAL SPACES; FUNCTIONAL TISSUE; INFORMATION CHANNELS; INVASIVE METHODS; PATIENT PROGNOSIS; PROTEIN FUNCTIONS; PROTEOMES; RELATIVE ENTROPY; ROADMAP;

GENE EXPRESSION; HISTOLOGY; INFORMATION THEORY; PROTEINS; TISSUE;

DIAGNOSIS;

BIOLOGICAL MARKER;

ARTICLE; BIOLOGY; BODY FLUID; CHEMISTRY; FEMALE; HUMAN; INFORMATION SCIENCE; MALE; PREGNANCY; PROTEOMICS; STATISTICAL MODEL; STATISTICS; TISSUE DISTRIBUTION;

BIOLOGICAL MARKERS; BODY FLUIDS; COMPUTATIONAL BIOLOGY; FEMALE; HUMANS; INFORMATION THEORY; MALE; MODELS, STATISTICAL; PREGNANCY; PROTEOMICS; TISSUE DISTRIBUTION;

EID: 40549124702     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (34)

1. M. Tyers and M. Mann, Nature 422 (6928), 193 (2003).
2. S. G. Sakka, Current opinion in critical care 13 (2), 207 (2007).
3. E. A. Singer, D. F. Penson, and G. S. Palapattu, Jama 297 (9), 949; author reply 949 (2007).
4. D. C. Crawford, C. L. Sanders, X. Qin et al., Circulation 114 (23), 2458 (2006).
5. L. A. Liotta, M. Ferrari, and E. Petricoin, Nature 425 (6961), 905 (2003).
6. Y. D. He, Cancer Biomark 2 (3-4), 103 (2006).
7. J. M. Jacobs, J. N. Adkins, W. J. Qian et al., J Proteome Res 4 (4), 1073 (2005).
8. N. L. Anderson and N. G. Anderson, Mol Cell Proteomics 1 (1l), 845 (2002).
9. Gil Alterovitz, Michael Xiang, and Marco F. Ramoni, presented at the Proceedings of the Information Theory Applications Workshop, San Diego, CA, 2007 (unpublished).
10. S. Hu, J. A. Loo, and D. T. Wong, Proteomics 6 (23), 6326 (2006);
11. M. A. Tangrea, B. S. Wallis, J. W. Gillespie et al., Expert review ofproteomics 1 (2), 185 (2004).
12. E. Camon, M. Magrane, D. Barrel et al., Nucleic Acids Res 32 (Database issue), D262 (2004).
13. M. Ashburner, C. A. Ball, J. A. Blake et al., Nature genetics 25 (I), 25 (2000).
14. D. L. Wheeler, T. Barrett, D. A. Benson et al., Nucleic Acids Res 34 (Database issue), D173 (2006).
15. M. Hewett, D. E. Oliver, D. L. Rubin et al., Nucleic Acids Res 30 (I), 163 (2002).
16. J. C. MacKay, Information theory, inference, and learning algorithms. (Cambridge University Press, Cambridge, U. K. ;New York, 2003).
17. Martin Bland, An Introduction to Medical Statistics, 3rd ed. (Oxford University Press, 2000).
18. G. Alterovitz, M. Xiang, M. Mohan et al., Nucleic acids research 35 (Database issue), D322 (2007).
19. S. B. Koevary, V. Lam, and G. Patsiopoulos, Optometry 75 (3), 183 (2004).
20. S. B. Koevary, V. Lam, G. Patsiopoulos et al., J Ocul Pharmacol Ther 19 (4), 377 (2003).
21. R. H. Boerman, A. C. Peters, B. R. Bloem et al., Acta Neuropathol (Berl) 83 (3), 300 (1992).
22. J. Prada, B. Noelle, H. Baatz et al., Br J OphthalmolS7 (9, 548 (2003).
23. E. Hilton, A. A. Adams, A, Uliss et al., Lancet 1 (8337), 1318 (1983).
24. K. F. Chung, Curr Drug Targets 7 (6), 675 (2006).
25. J. Domagala-Kulawik, M. Maskey-Warzechowska, J. Hermanowicz-Salamon et al., J Physiol Pharmacol57 Suppl4, 75 (2006).
26. H. Lassus, H. Sihto, A. Leminen et al., Journal of molecular medicine (Berlin, Germany) 84 (8), 671 (2006).
27. M. C. King, J. H. Marks, and J. B. Mandell, Science 302 (5645), 643 (2003).
28. C. D. Hough, K. R. Cho, A. B. Zonderman et al., Cancer research 61 (1o), 3869 (2001).
29. Y. C. Chen, G. Pohl, T. L. Wang et al., Cancer research 65 (I), 331 (2005).
30. R. Gogoi, S. Srinivasan, and D. A. Fishman, Expert review of molecular diagnostics 6 (4), 627 (2006).
31. S. S. Petanceska, V. Nagy, D. Frail et al., Experimental gerontology 35 (9-10), 1317 (2000).
32. D. Roberts, J. Schick, S. Conway et al., British journal of cancer 92 (6), 1149 (2005).
33. J. D. Storey and R. Tibshirani, Proceedings of the National Academy of Sciences of the United States of America 100 (16), 9440 (2003).
34. T. I. Williams, K. L. Toups, D. A. Saggese et al., Journal ofproteome research (2007).