Annotating pathways in interaction networks

Pacific Symposium on Biocomputing 2008, PSB 2008

Volumn , Issue , 2008, Pages 153-165

  Pandey, Jayesh ^a   Koyutürk, Mehmet ^a,b   Szpankowski, Wojciech ^a   Grama, Ananth ^a  

^a Purdue University   (United States)

^b CASE WESTERN RESERVE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR ORGANIZATION; COMPREHENSIVE ANALYSIS; COMPREHENSIVE EVALUATION; E. COLI; FUNCTIONAL ANNOTATION; FUNCTIONAL ATTRIBUTE; INTERACTION NETWORKS; MOLECULAR FUNCTION; PROTEIN-PROTEIN INTERACTIONS; STATISTICAL MEASURES; TRANSCRIPTIONAL REGULATION;

ESCHERICHIA COLI; PROTEINS;

ACTIVE NETWORKS;

ESCHERICHIA COLI PROTEIN;

ALGORITHM; ARTICLE; BACTERIAL GENE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER INTERFACE; COMPUTER PROGRAM; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; GENETICS; GENOMICS; METABOLISM; MOLECULAR BIOLOGY; PROTEIN ANALYSIS; STATISTICAL MODEL; STATISTICS;

ALGORITHMS; COMPUTATIONAL BIOLOGY; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENES, BACTERIAL; GENOMICS; MODELS, BIOLOGICAL; MODELS, STATISTICAL; MOLECULAR BIOLOGY; PROTEIN INTERACTION MAPPING; SOFTWARE; TRANSCRIPTION, GENETIC; USER-COMPUTER INTERFACE;

EID: 40549101876     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (26)

1. S. S. Shen-Orret al., Nature Genetics 31, 64 (2002).
2. M. Koyutiirk et al., Journal of Computational Biology 13, 1299 (2006).
3. R. Sharan and T. Ideker, Nature Biotechnology 24, 427 (2006).
4. M. Ashburner et al., Nat Genet 25, 25 (2000).
5. B. Schwikowski et al., Nat Biotechnol18, 1257ec 2000).
6. T. I. Lee et al., Science 298, 799(0ctober 2002).
7. A. H. Y. Tong et al., Science 303, 808(February 2004).
8. J. Gamalielsson et al., A GO-based method for assessing the biological plausibility of regulatory hypotheses, in ICCS (2), 2006.
9. J. Pandey et al., Bioinfomzatics 23, 377(Ju12007).
10. S. Liang et al., Proc. Pacific Symp. Biocomp. 3, 18 (1998).
11. P. Uetz et al., Nature 403, 623 (2000).
12. H. Kitano, Science 295, 1662 (2002).
13. V. Chvhtal, Discrete Mathematics 25, 285 (1979).
14. P. Shannon et al., Genome Res 13, 2498(Nov 2003).
15. J. Heer et al., Refuse: a toolkit for interactive information visualization, in CHI '05: Proceeding of the SIGCHI, (ACM Press, 2005).
16. H. Salgado et al., Nucleic Acids Res 34(Januq 2006).
17. L. Salwinski et al., Nucleic Acids Res 32, 449(Jan 2004).
18. E. Camon et al., Nucleic Acids Res 32, 262(Jan 2004).
19. B. Wackwitz et al., Mol Gen Genet 262, 876@ec 1999).
20. S. Hopper et al., J Biol Chem 269, 19597(Jul 1994).
21. B. Bukau and A. L. Horwich, Cell 92, 35l(Feb 1998).
22. C. Chae et al., J Biol Chem 279, 33147(Aug 2004).
23. B. Banecki et al., Biochim Biophys Acta 1442, 39(0ct 1998).
24. K. Saito et al., JMol Biol235, 11l(Jan 1994), Comparative Study.
25. M. Kirac and G. Ozsoyoglu (submitted).
26. A. Cakmak and G. Ozsoyoglu, Bioinfomzatics (in press).