메뉴 건너뛰기




Volumn 2, Issue 2, 2004, Pages 241-256

Deriving haplotypes through recombination and gene conversion pathways

Author keywords

Algorithm; Gene conversion; Haplotype; Recombination

Indexed keywords

ANALYTIC METHOD; ARTICLE; ENERGY; GENE CONVERSION; GENE MUTATION; GENE STRUCTURE; GENETIC ALGORITHM; GENETIC CODE; GENETIC RECOMBINATION; HAPLOTYPE; MATHEMATICAL ANALYSIS; PLESIOMORPHY; PROBLEM SOLVING;

EID: 4043073653     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720004000545     Document Type: Article
Times cited : (4)

References (27)
  • 1
    • 0032015168 scopus 로고    scopus 로고
    • "The effect of gene conversion on intralocus associations"
    • P. Andolfatto and M. Nordborg, "The effect of gene conversion on intralocus associations," Genetics 148, 1397-1399 (1998).
    • (1998) Genetics , vol.148 , pp. 1397-1399
    • Andolfatto, P.1    Nordborg, M.2
  • 2
    • 0033799573 scopus 로고    scopus 로고
    • "Apolipoprotein E variation at the sequence haplotype level: Implications for the origin and maintenance of a major human polymorphism"
    • S. M. Fullerton et al., "Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism," Am. J. Hum. Genet. 67, 881-900 (2000).
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 881-900
    • Fullerton, S.M.1
  • 3
    • 0034036808 scopus 로고    scopus 로고
    • "Microsatellite mutations and inferences about human demography"
    • R. Gonser, P. Donnelly, G. Nicholson and A. Di Rienzo, "Microsatellite mutations and inferences about human demography," Genetics 154, 1793-1807 (2000).
    • (2000) Genetics , vol.154 , pp. 1793-1807
    • Gonser, R.1    Donnelly, P.2    Nicholson, G.3    Di Rienzo, A.4
  • 4
    • 0030498194 scopus 로고    scopus 로고
    • "Ancestral inference from samples of DNA sequences with recombination"
    • R. C. Griffiths and P. Marjoram, "Ancestral inference from samples of DNA sequences with recombination," J. Comput. Biol. 3(4), 479-502 (1996).
    • (1996) J. Comput. Biol. , vol.3 , Issue.4 , pp. 479-502
    • Griffiths, R.C.1    Marjoram, P.2
  • 6
    • 0025299784 scopus 로고
    • "Reconstructing the evolution of sequences subject to recombination using parsimony"
    • J. Hein, "Reconstructing the evolution of sequences subject to recombination using parsimony," Math. Biosci. 98, 185-200 (1990).
    • (1990) Math. Biosci. , vol.98 , pp. 185-200
    • Hein, J.1
  • 7
    • 0027471670 scopus 로고
    • "A heuristic method to reconstruct the history of sequences subject to recombination"
    • J. Hein, "A heuristic method to reconstruct the history of sequences subject to recombination," J. Mol. Evol. 36, 396-405 (1993).
    • (1993) J. Mol. Evol. , vol.36 , pp. 396-405
    • Hein, J.1
  • 8
    • 0034764948 scopus 로고    scopus 로고
    • "Phylogenetic and familial estimates of mitochondrial substitution rates: Study of control region mutations in deep-rooting pedigrees"
    • E. Heyer, E. Zietkiewicz, A. Rochowski, V. Yotova, J. C. Puymirat and D. Labuda, "Phylogenetic and familial estimates of mitochondrial substitution rates: study of control region mutations in deep-rooting pedigrees," Am. J. Hum. Genet. 69, 1113-1126 (2001).
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1113-1126
    • Heyer, E.1    Zietkiewicz, E.2    Rochowski, A.3    Yotova, V.4    Puymirat, J.C.5    Labuda, D.6
  • 9
    • 0022211482 scopus 로고
    • "Statistical properties of the number of recombination events in the history of a sample of DNA sequences"
    • R. R. Hudson and N. L. Kaplan, "Statistical properties of the number of recombination events in the history of a sample of DNA sequences," Genetics 111, 147-164 (1985).
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 10
    • 0032789358 scopus 로고    scopus 로고
    • "Spatial and temporal distribution of the neutral polymorphisms in the last ZFX intron: Analysis of the haplotype structure and genealogy"
    • J. Jaruzelska, E. Zietkiewicz, M. Batzer, D. E. Cole, J. P. Moisan, R. Scozzari, S. Tavaré and D. Labuda, "Spatial and temporal distribution of the neutral polymorphisms in the last ZFX intron: analysis of the haplotype structure and genealogy," Genetics 152, 1091-1101 (1999).
    • (1999) Genetics , vol.152 , pp. 1091-1101
    • Jaruzelska, J.1    Zietkiewicz, E.2    Batzer, M.3    Cole, D.E.4    Moisan, J.P.5    Scozzari, R.6    Tavaré, S.7    Labuda, D.8
  • 11
    • 0344436038 scopus 로고    scopus 로고
    • "Dna sequence variation in a non-coding region of low recombination on the human X chromosome"
    • H. Kaessmann, F. Heissig, A. Von Haeseler and S. Paabo, "Dna sequence variation in a non-coding region of low recombination on the human X chromosome," Nat. Genet. 22, 78-81 (1999).
    • (1999) Nat. Genet. , vol.22 , pp. 78-81
    • Kaessmann, H.1    Heissig, F.2    Von Haeseler, A.3    Paabo, S.4
  • 12
    • 0039528958 scopus 로고    scopus 로고
    • "Reconstructing a history of recombinations from a set of sequences"
    • J. Kececioglu and D. Gusfield, "Reconstructing a history of recombinations from a set of sequences," Dis. Appl. Math. 88, 239-260 (1998).
    • (1998) Dis. Appl. Math. , vol.88 , pp. 239-260
    • Kececioglu, J.1    Gusfield, D.2
  • 13
    • 0033790285 scopus 로고    scopus 로고
    • "Archaic lineages in the history of modern humans"
    • D. Labuda, E. Zietkiewicz and V. Yotova, "Archaic lineages in the history of modern humans," Genetics 156, 799-808 (2000).
    • (2000) Genetics , vol.156 , pp. 799-808
    • Labuda, D.1    Zietkiewicz, E.2    Yotova, V.3
  • 14
    • 27544442362 scopus 로고    scopus 로고
    • "Bounds on the minimum number of recombination events in a sample history"
    • S. R. Myers and R. C. Griffiths, "Bounds on the minimum number of recombination events in a sample history," Genetics (2002 ).
    • (2002) Genetics
    • Myers, S.R.1    Griffiths, R.C.2
  • 15
    • 18444412585 scopus 로고    scopus 로고
    • "A global perspective on genetic variation at the ADH genes reveals unusual patterns of linkage disequilibrium and diversity"
    • M. V. Osier et al., "A global perspective on genetic variation at the ADH genes reveals unusual patterns of linkage disequilibrium and diversity," Am. J. Hum. Genet. 71, 84-99 (2002).
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 84-99
    • Osier, M.V.1
  • 16
    • 0035027837 scopus 로고    scopus 로고
    • "Why is there so little intragenic linkage disequilibrium in humans?"
    • M. Przeworski and J. D. Wall, "Why is there so little intragenic linkage disequilibrium in humans?" Genet. Res. Camb. 77, 143-151 (2001).
    • (2001) Genet. Res. Camb. , vol.77 , pp. 143-151
    • Przeworski, M.1    Wall, J.D.2
  • 17
    • 0026063965 scopus 로고
    • "Branching pattern in the evolutionary tree for human mitochondrial DNA"
    • A. Di Rienzo and A. C. Wilson, "Branching pattern in the evolutionary tree for human mitochondrial DNA," Proc. Natl. Acad. Sci. USA 88, 1597-1601 (1991).
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 1597-1601
    • Di Rienzo, A.1    Wilson, A.C.2
  • 18
    • 0026548159 scopus 로고
    • "Population growth makes waves in the distribution of pairwise genetic differences"
    • A. R. Rogers and H. Harpending, "Population growth makes waves in the distribution of pairwise genetic differences," Mol. Biol. Evol. 9, 552-569 (1992).
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 19
    • 84956977089 scopus 로고    scopus 로고
    • "Methods for inferring block-wise ancestral history from haploid sequences - The haplotype coloring problem"
    • R. Guigó and D. Guslield (eds.), Springer
    • R. Schwartz, A. G. Clark and S. Istrail, "Methods for inferring block-wise ancestral history from haploid sequences - The haplotype coloring problem," in R. Guigó and D. Guslield (eds.), Second International Workshop, Algorithms in Bioinformatics (WABI'02), LNCS 2452, 44-59. Springer (2002).
    • (2002) Second International Workshop, Algorithms in Bioinformatics (WABI'02), LNCS , vol.2452 , pp. 44-59
    • Schwartz, R.1    Clark, A.G.2    Istrail, S.3
  • 20
    • 0035071957 scopus 로고    scopus 로고
    • "A new statistical method for haplotype reconstruction from population data"
    • M. Stephens, N. J. Smith and P. Donnelly, "A new statistical method for haplotype reconstruction from population data," Am. J. Hum. Genet. 68(4), 978-989 (2001).
    • (2001) Am. J. Hum. Genet. , vol.68 , Issue.4 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 21
    • 84957034204 scopus 로고    scopus 로고
    • "Finding founder sequences from a set of recombinants"
    • R. Guigó and D. Gusfield (eds.), Springer
    • E. Ukkonen, "Finding founder sequences from a set of recombinants," in R. Guigó and D. Gusfield (eds.), Second International Workshop, Algorithms in Bioinformatics (WABI'02), LNCS 2452, 277-286. Springer (2002).
    • (2002) Second International Workshop, Algorithms in Bioinformatics (WABI'02), LNCS , vol.2452 , pp. 277-286
    • Ukkonen, E.1
  • 23
    • 0034913468 scopus 로고    scopus 로고
    • "Perfect phylogenetic networks with recombination"
    • L. Wang, K. Zhang and L. Zhang, "Perfect phylogenetic networks with recombination," Journal of Computational Biology 8(1), 69-78 (2001).
    • (2001) Journal of Computational Biology , vol.8 , Issue.1 , pp. 69-78
    • Wang, L.1    Zhang, K.2    Zhang, L.3
  • 24
    • 0033013990 scopus 로고    scopus 로고
    • "The ancestry of a sample of sequences subject to recombination"
    • C. Wiuf and J. Hein, "The ancestry of a sample of sequences subject to recombination," Genetics 151, 1217-1228 (1999).
    • (1999) Genetics , vol.151 , pp. 1217-1228
    • Wiuf, C.1    Hein, J.2
  • 25
    • 0033150745 scopus 로고    scopus 로고
    • "Recombination as a point process along sequences"
    • C. Wiuf and J. Hein, "Recombination as a point process along sequences," Theor. Pop. Biol. 55, 248-259 (1999).
    • (1999) Theor. Pop. Biol. , vol.55 , pp. 248-259
    • Wiuf, C.1    Hein, J.2
  • 26
    • 0034096027 scopus 로고    scopus 로고
    • "The coalescent with gene conversion"
    • C. Wiuf and J. Hein, "The coalescent with gene conversion," Genetics 155, 451-462 (2000).
    • (2000) Genetics , vol.155 , pp. 451-462
    • Wiuf, C.1    Hein, J.2
  • 27
    • 4043048994 scopus 로고    scopus 로고
    • "A greedy algorithm for optimal recombination"
    • J. Wang (ed.), Springer-Verlag
    • S. Wu and X. Gu, "A greedy algorithm for optimal recombination," in J. Wang (ed.), COCOON, LNCS 2001, 87 90. Springer-Verlag (2001).
    • (2001) COCOON, LNCS , vol.2001 , pp. 87-90
    • Wu, S.1    Gu, X.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.