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Volumn 12, Issue 2, 2008, Pages 301-308

Lysis efficiency of standard DNA extraction methods for Halococcus spp. in an organic rich environment

Author keywords

Cell lysis; Halococcus; Organic rich environment; Stromatolites; XS buffer

Indexed keywords

ARCHAEAL DNA;

EID: 40349103383     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-007-0124-8     Document Type: Article
Times cited : (39)

References (40)
  • 3
    • 0030070873 scopus 로고    scopus 로고
    • Polymerase chain reaction (PCR) detection of Listeria monocytogenes in diluted milk and reversal of PCR inhibition caused by calcium ions
    • Bickley J, Short JK, McDowell DG, Parkes HC (1996) Polymerase chain reaction (PCR) detection of Listeria monocytogenes in diluted milk and reversal of PCR inhibition caused by calcium ions. Lett Appl Microbiol 22:153-158
    • (1996) Lett Appl Microbiol , vol.22 , pp. 153-158
    • Bickley, J.1    Short, J.K.2    McDowell, D.G.3    Parkes, H.C.4
  • 4
    • 4644335422 scopus 로고    scopus 로고
    • Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia
    • Burns BP, Goh F, Allen MA, Neilan BA (2004) Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay, Australia. Environ Microbiol 6:1096-1101
    • (2004) Environ Microbiol , vol.6 , pp. 1096-1101
    • Burns, B.P.1    Goh, F.2    Allen, M.A.3    Neilan, B.A.4
  • 6
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong EF (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 5685-5689
    • Delong, E.F.1
  • 7
    • 1642523441 scopus 로고    scopus 로고
    • Soil washing improves the recovery of total community DNA from polluted and high organic content sediments
    • Fortin N, Beaumier D, Lee K, Greer CW (2004) Soil washing improves the recovery of total community DNA from polluted and high organic content sediments. J Microbiol Meth 56:181-191
    • (2004) J Microbiol Meth , vol.56 , pp. 181-191
    • Fortin, N.1    Beaumier, D.2    Lee, K.3    Greer, C.W.4
  • 8
    • 25444529747 scopus 로고    scopus 로고
    • Gene-based identification of bacterial colonies with an electric chip
    • Gabig-Ciminska M, Liu Y, Enfors SO (2005) Gene-based identification of bacterial colonies with an electric chip. Anal Biochem 345:270-276
    • (2005) Anal Biochem , vol.345 , pp. 270-276
    • Gabig-Ciminska, M.1    Liu, Y.2    Enfors, S.O.3
  • 9
  • 10
  • 11
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180:4765-4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 12
    • 0031945225 scopus 로고    scopus 로고
    • Cell wall polymers in Archaea (Archaebacteria)
    • Kandler O, König H (1998) Cell wall polymers in Archaea (Archaebacteria). Cell Mol Life Sci 54:305-308
    • (1998) Cell Mol Life Sci , vol.54 , pp. 305-308
    • Kandler, O.1    König, H.2
  • 15
    • 33846127844 scopus 로고    scopus 로고
    • Analysis of intergenic spacer region length polymorphisms to investigate the halophilic archaeal diversity of stromatolites and microbial mats
    • Leuko S, Goh F, Allen MA, Burns BP, Walter MR, Neilan BA (2007) Analysis of intergenic spacer region length polymorphisms to investigate the halophilic archaeal diversity of stromatolites and microbial mats. Extremophiles 11:203-210
    • (2007) Extremophiles , vol.11 , pp. 203-210
    • Leuko, S.1    Goh, F.2    Allen, M.A.3    Burns, B.P.4    Walter, M.R.5    Neilan, B.A.6
  • 16
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic Bacteria
    • Liesack W, Weyland H, Stackebrandt E (1991) Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic Bacteria. Microb Ecol 21:191-198
    • (1991) Microb Ecol , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 17
    • 33644871362 scopus 로고    scopus 로고
    • DNA extraction procedure: A critical issue for bacterial diversity assessment in marine sediments
    • Luna GM, Dell'Anno A, Danovaro R (2006) DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments. Environ Microbiol 8:308-320
    • (2006) Environ Microbiol , vol.8 , pp. 308-320
    • Luna, G.M.1    Dell'Anno, A.2    Danovaro, R.3
  • 18
    • 0028087753 scopus 로고
    • Purification and molecular analysis of microbial DNA from compost
    • Malik M, Kain J, Pettigrew C, Ogram A (1994) Purification and molecular analysis of microbial DNA from compost. J Microbiol Meth 20:183-196
    • (1994) J Microbiol Meth , vol.20 , pp. 183-196
    • Malik, M.1    Kain, J.2    Pettigrew, C.3    Ogram, A.4
  • 20
    • 0032703237 scopus 로고    scopus 로고
    • Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
    • Miller DN, Bryant JE, Madsen EL, Ghiorse WC (1999) Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microbiol 65:4715-4724
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4715-4724
    • Miller, D.N.1    Bryant, J.E.2    Madsen, E.L.3    Ghiorse, W.C.4
  • 22
    • 4143143096 scopus 로고    scopus 로고
    • Rapid real-time PCR assay for detection and quantitation of Mycobacterium avium subsp. paratuberculosis DNA in artificially contaminated milk
    • O'Mahony J, Hill C (2004) Rapid real-time PCR assay for detection and quantitation of Mycobacterium avium subsp. paratuberculosis DNA in artificially contaminated milk. Appl Environ Microbiol 70:4561-4568
    • (2004) Appl Environ Microbiol , vol.70 , pp. 4561-4568
    • O'Mahony, J.1    Hill, C.2
  • 23
    • 0036688885 scopus 로고    scopus 로고
    • Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies
    • Ochsenreiter T, Pfeifer F, Schleper C (2002) Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies. Extremophiles 6:267-274
    • (2002) Extremophiles , vol.6 , pp. 267-274
    • Ochsenreiter, T.1    Pfeifer, F.2    Schleper, C.3
  • 24
    • 12744281935 scopus 로고
    • The extraction and purification of microbial DNA from sediments
    • Ogram A, Sayler GS, Barkay T (1987) The extraction and purification of microbial DNA from sediments. J Microbiol Meth 7:57-66
    • (1987) J Microbiol Meth , vol.7 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 25
    • 0027954763 scopus 로고
    • The ecology of the extremely halophilic archaea
    • Oren A (1994) The ecology of the extremely halophilic archaea. FEMS Microbiol Rev 13:415-440
    • (1994) FEMS Microbiol Rev , vol.13 , pp. 415-440
    • Oren, A.1
  • 27
    • 23744506517 scopus 로고    scopus 로고
    • Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia
    • Papineau D, Walker JJ, Mojzsis SJ, Pace NR (2005) Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia. Appl Environ Microbiol 71:4822-4832
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4822-4832
    • Papineau, D.1    Walker, J.J.2    Mojzsis, S.J.3    Pace, N.R.4
  • 28
    • 27644497707 scopus 로고    scopus 로고
    • Nucleic acid recovery from complex environmental samples
    • Elsevier New York
    • Purdy KJ (2005) Nucleic acid recovery from complex environmental samples. In: Leadbetter JR (ed) Methods of enzymology, vol 397. Elsevier, New York, pp 271-292
    • (2005) Methods of Enzymology , vol.397 , pp. 271-292
    • Purdy, K.J.1    Leadbetter, J.R.2
  • 29
    • 0035431186 scopus 로고    scopus 로고
    • Novel haloarchaeal 16S rRNA gene sequences from alpine permo-triassic rock salt
    • Radax C, Gruber C, Stan-Lotter H (2001) Novel haloarchaeal 16S rRNA gene sequences from alpine permo-triassic rock salt. Extremophiles 5:221-228
    • (2001) Extremophiles , vol.5 , pp. 221-228
    • Radax, C.1    Gruber, C.2    Stan-Lotter, H.3
  • 35
    • 0033864928 scopus 로고    scopus 로고
    • Xanthogenate nucleic acid isolation from cultured and environmental cyanobacteria
    • Tillett D, Neilan BA (2000) Xanthogenate nucleic acid isolation from cultured and environmental cyanobacteria. J Phycol 36:251-258
    • (2000) J Phycol , vol.36 , pp. 251-258
    • Tillett, D.1    Neilan, B.A.2
  • 36
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai YL, Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57:1070-1074
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 38
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson IG (1997) Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol 63:3741-3751
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 39
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • v. Wintzingerode F, Göbel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21:213-229
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • V. Wintzingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.