Non-enzymatic hydrolysis of fluorescein diacetate (FDA) in a Mediterranean oak (Quercus ilex L.) litter

European Journal of Soil Science

Volumn 59, Issue 2, 2008, Pages 139-146

  Alarcon Gutierrez E ^a   Floch, C ^a   Ruaudel, F ^a   Criquet, S ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ACETATE (ESTER); CARBON ISOTOPE; DECIDUOUS TREE; EVERGREEN TREE; HUMIFICATION; HYDROLYSIS; IRRADIATION; LITTER; MICROBIAL ACTIVITY; PHENOLIC COMPOUND; PHOSPHATE; PROTEIN;

ILEX; QUERCUS ILEX;

EID: 40349102257     PISSN: 13510754     EISSN: 13652389     Source Type: Journal    
DOI: 10.1111/j.1365-2389.2007.00963.x     Document Type: Article

References (35)

1. Adam, G. Duncan, H. 2001. Development of a sensitive and rapid method for the measurement of total microbial activity using fluorescein diacetate (FDA) in a range of soils. Soil Biology & Biochemistry, 33, 943 951.
2. Allison, S.D. 2006. Soil minerals and humic acids alter enzyme stability: implications for ecosystem processes. Biogeochemistry, 81, 361 373.
3. 13C NMR assessment of decomposition patterns during composting of forest and shrub biomass. Soil Biology & Biochemistry, 32, 793 804.
4. Andersson, M., Kjoller, A. Struwe, S. 2004. Microbial enzyme activities in leaf litter, humus and mineral soil layers of European forests. Soil Biology & Biochemistry, 36, 1527 1537.
5. Audette-Stuart, M., Houee-Levin, C. Potier, M. 2005. Radiation-induced protein fragmentation and inactivation in liquid and solid aqueous solutions. Role of OH and electrons. Radiation Physics and Chemistry, 72, 301 306.
6. Baize, D. Girard, M.-C. 1995. Réferentiel pédologique. AFES-INRA (Eds Paris, France.
7. Bartkowiak, D., Hogner, S., Baust, H., Nothdurft, W. Rottinger, E.M. 1999. Comparative analysis of apoptosis in HL60 detected by annexin-V and fluorescein-diacetate. Cytometry: The Journal of The Society For Analytical Cytology, 37, 191 196.
8. Breeuwer, P. Abee, T. 2000. Assessment of viability of microorganisms employing fluorescence techniques. International Journal of Food Microbiology, 55, 193 200.
9. Bunthof, C.J., Van den Braak, S., Breeuwer, P., Rombouts, F.M. Abee, T. 2000. Fluorescence assessment of Lactococcus lactis viability. International Journal of Food Microbiology, 55, 291 294.
10. Chapelier, A., Desmadril, M. Houee-Levin, C. 2001. Gamma radiation effects on alpha-lactalbumin: structural modifications. Canadian Journal of Physiology and Pharmacology, 79, 154 157.
11. Clarke, J.M., Gillings, M.R., Altavilla, N.B. Andrew, J. 2001. Potential problems with fluorescein diacetate assays of cell viability when testing natural products for antimicrobial activity. Journal of Microbiological Methods, 46, 261 267.
12. Criquet, S., Vogt, G. Le Petit, J. 2002. Endoglucasase and B-glycosidase activities in an evergreen oak litter: annual variation and regulating factors. Soil Biology & Biochemistry, 34, 1111 1120.
13. Friedel, J.K. Scheller, E. 2002. Composition of hydrolysable amino acids in soil organic matter and soil microbial biomass. Soil Biology & Biochemistry, 34, 315 325.
14. Gill, M.S., Neverov, A. Brown, R.S. 1997. Dissection of nucleophilic and general base roles for the reaction of phosphate with p-nitrophenyl thiolacetate, p-nitrophenyl thiolformate, and phenyl thiolacetate. Journal of Organic Chemistry, 62, 7351 7357.
15. Houée-Levin, C. Bergès, J. 2002. A DFT study of electron or hole localization in a peptide containing asparagin. European Physical Journal D, 20, 551 555.
16. Ingham, E.R. Klein, D.A. 1984. Soil fungi: relationships between hyphal activity and staining with fluorescein diacetate. Soil Biology & Biochemistry, 16, 273 278.
17. 15N NMR analysis of some fungal melanins in comparison with soil organic matter. Organic Geochemistry, 23, 1023 1028.
18. Kögel, I. 1986. Estimation and decomposition pattern of the lignin component in forest humus layers. Soil Biology & Biochemistry, 18, 589 594.
19. Kögel-Knabner, I. 2002. The macromolecular organic composition of plant and microbial residues as imputs to soil organic matter. Soil Biology & Biochemistry, 34, 139 162.
20. Kristol, D.S., Krautheim, P., Stanley, S. Parker, R.C. 1975. The reaction of p-nitrophenyl acetate with lysine and lysine derivatives. Bioorganic Chemistry, 4, 299 304.
21. Lähdesmäki, P. Piispanen, R. 1989. Changes in concentrations of free amino acids during humification of spruce and aspen leaf litter. Soil Biology & Biochemistry, 21, 975 978.
22. McNamara, N.P., Black, H.I.J., Beresford, N.A. Parekh, N.R. 2003. Effects of acute gamma irradiation on chemical, physical and biological properties of soils. Applied Soil Ecology, 24, 117 132.
23. Niemi, R.M., Vepsalainen, M., Wallenius, K., Simpanen, S., Alakukku, L. Pietola, L. 2005. Temporal and soil depth-related variation in soil enzyme activities and in root growth of red clover (Trifolium pratense) and timothy (Phleum pratense) in the field. Applied Soil Ecology, 30, 113 125.
24. 13CPMAS-NMR spectroscopy and chemical analysis of coarse woody debris in coastal forests of Vancouver Island. Forest Ecology and Management, 111, 51 68.
25. Rastin, N., Rosenplanter, K. Huttermann, A. 1988. Seasonal variation of enzyme activity and their dependence on certain soil factors in a beech forest soil. Soil Biology & Biochemistry, 20, 637 642.
26. Rovira, P. Vallejo, V.R. 1997. Organic carbon and nitrogen mineralization under Mediterranean climatic conditions: the effects of incubation depth. Soil Biology & Biochemistry, 29, 1509 1520.
27. Schloter, M., Dilly, O. Munch, J.C. 2003. Indicators for evaluating soil quality. Agriculture, Ecosystems & Environment, 98, 255 262.
28. Schnürer, J. Rosswall, T. 1982. Fluorescein diacetate hydrolysis as a measure of total microbial activity in soil and litter. Applied and Environmental Microbiology, 43, 1256 1261.
29. Sjöberg, G., Knicker, H., Nilsson, S.I. Berggren, D. 2004. Impact of long-term N fertilization on the structural composition of spruce litter and mor humus. Soil Biology & Biochemistry, 36, 609 618.
30. Tabatabai, M.A., Garcia-Manzanedo, A.M. Acosta-Martinez, V. 2002. Substrate specificity of arylamidase in soils. Soil Biology & Biochemistry, 34, 103 110.
31. Taylor, J.P., Wilson, B., Mills, M.S. Burns, R.G. 2002. Comparison of microbial numbers and enzymatic activities in surface soils and subsoils using various techniques. Soil Biology & Biochemistry, 34, 387 401.
32. 13C NMR spectroscopy and chemical methods. Geoderma, 111, 123 149.
33. Wanandy, S., Brouwer, N., Liu, Q., Mahon, A., Cork, S., Karuso, P. et al. 2005. Optimisation of the fluorescein diacetate antibacterial assay. Journal of Microbiological Methods, 60, 21 30.
34. Yang, H.Y. 1986. Fluorescein diacetate used as a vital stain for labeling living pollen tubes. Plant Science, 44, 59 63.
35. Zechel, D.L. Withers, S.G. 2001. Dissection of nucleophilic and acid-base catalysis in glycosidases. Current Opinion in Chemical Biology, 5, 643 649.