-
1
-
-
0032551829
-
Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system
-
Agrawal, A., Eastman, Q.M., Schatz, D.G., 1998. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature 394, 744-751.
-
(1998)
Nature
, vol.394
, pp. 744-751
-
-
Agrawal, A.1
Eastman, Q.M.2
Schatz, D.G.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J., 1990. Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
22044456043
-
Professional antigen-presentation function by human gammadelta T Cells
-
Brandes, M.,Willimann, K., Moser, B., 2005. Professional antigen-presentation function by human gammadelta T Cells. Science 309, 264-268.
-
(2005)
Science
, vol.309
, pp. 264-268
-
-
Brandes, M.1
Willimann, K.2
Moser, B.3
-
4
-
-
0024574344
-
Tissue localization and CD8 accessory molecule expression of T gamma delta cells in humans
-
Bucy, R.P., Chen, C.L., Cooper, M.D., 1989. Tissue localization and CD8 accessory molecule expression of T gamma delta cells in humans. J. Immunol. 142, 3045-3049.
-
(1989)
J. Immunol.
, vol.142
, pp. 3045-3049
-
-
Bucy, R.P.1
Chen, C.L.2
Cooper, M.D.3
-
5
-
-
0024794176
-
Molecular analysis of human gamma/delta+ clones from thymus and peripheral blood
-
Casorati, G., De Libero, G., Lanzavecchia, A., Migone, N., 1989. Molecular analysis of human gamma/delta+ clones from thymus and peripheral blood. J. Exp. Med. 170, 1521-1535.
-
(1989)
J. Exp. Med.
, vol.170
, pp. 1521-1535
-
-
Casorati, G.1
De Libero, G.2
Lanzavecchia, A.3
Migone, N.4
-
6
-
-
21344474628
-
Characterization of the T-cell receptor gamma locus and analysis of the variable gene segment expression in rabbit
-
Cho, K.S., Zhai, S.K., Esteves, P.J., Knight, K.L., 2005. Characterization of the T-cell receptor gamma locus and analysis of the variable gene segment expression in rabbit. Immunogenetics 57, 352-363.
-
(2005)
Immunogenetics
, vol.57
, pp. 352-363
-
-
Cho, K.S.1
Zhai, S.K.2
Esteves, P.J.3
Knight, K.L.4
-
7
-
-
33846192480
-
The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette
-
Conrad, M.L.,Mawer, M.A., Lefranc, M.P., McKinnell, L., Whitehead, J., Davis, S.K., Pettman, R., Koop, B.F., 2007. The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette. Vet. Immunol. Immunopathol. 115, 346-356.
-
(2007)
Vet. Immunol. Immunopathol.
, vol.115
, pp. 346-356
-
-
Conrad, M.L.1
Mawer, M.A.2
Lefranc, M.P.3
McKinnell, L.4
Whitehead, J.5
Davis, S.K.6
Pettman, R.7
Koop, B.F.8
-
8
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G.E., Hon, G., Chandonia, J.M., Brenner, S.E., 2004. WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
9
-
-
0023720148
-
T-cell antigen receptor genes and T-cell recognition
-
Davis, M.M., Bjorkman, P.J., 1988. T-cell antigen receptor genes and T-cell recognition. Nature 334, 395-402.
-
(1988)
Nature
, vol.334
, pp. 395-402
-
-
Davis, M.M.1
Bjorkman, P.J.2
-
10
-
-
0025325169
-
T cell receptor gene diversity and selection
-
Davis, M.M., 1990. T cell receptor gene diversity and selection. Annu. Rev. Biochem. 59, 475-496.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 475-496
-
-
Davis, M.M.1
-
11
-
-
7444270644
-
Mechanisms of antigen receptor evolution
-
Eason, D.D., Cannon, J.P., Haire, R.N., Rast, J.P., Ostrov, D.A., Litman, G.W., 2004. Mechanisms of antigen receptor evolution. Semin. Immunol. 16, 215-226.
-
(2004)
Semin. Immunol.
, vol.16
, pp. 215-226
-
-
Eason, D.D.1
Cannon, J.P.2
Haire, R.N.3
Rast, J.P.4
Ostrov, D.A.5
Litman, G.W.6
-
12
-
-
0031978181
-
Base-calling of automated sequencer traces using PHRED II. Error probabilities
-
Ewing, B., Green, P., 1998. Base-calling of automated sequencer traces using PHRED II. Error probabilities. Genome Res. 8, 186-194.
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
13
-
-
0031955518
-
Base-calling of automated sequencer traces using PHRED I. Accuracy assessment
-
Ewing, B., Hillier, L.,Wendl, M.C., Green, P., 1998. Base-calling of automated sequencer traces using PHRED I. Accuracy assessment. Genome Res. 8, 175-185.
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
14
-
-
0037803460
-
Internet contig explorer (iCE) - A tool for visualizing clone fingerprint maps
-
Fjell, C.D., Bosdet, I., Schein, J.E., Jones, S.J.M., Marra, M.A., 2003. Internet contig explorer (iCE)-a tool for visualizing clone fingerprint maps.Genome Res. 13, 1244-1249.
-
(2003)
Genome Res.
, vol.13
, pp. 1244-1249
-
-
Fjell, C.D.1
Bosdet, I.2
Schein, J.E.3
Jones, S.J.M.4
Marra, M.A.5
-
15
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon, D., Abajian, C., Green, P., 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8, 195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
16
-
-
0036380715
-
Structure and diversity of T-lymphocyte antigen receptors alpha and gamma in Xenopus
-
Haire, R.N., Kitzan Haindfield, M.K., Turpen, J.B., Litman, G.W., 2002. Structure and diversity of T-lymphocyte antigen receptors alpha and gamma in Xenopus. Immunogenetics 54, 431-438.
-
(2002)
Immunogenetics
, vol.54
, pp. 431-438
-
-
Haire, R.N.1
Kitzan Haindfield, M.K.2
Turpen, J.B.3
Litman, G.W.4
-
17
-
-
0034091286
-
[Gamma][delta] cells: A right time and a right place for a conserved third way of protection
-
Hayday, A.C., 2000. [Gamma][delta] cells: a right time and a right place for a conserved third way of protection. Annu. Rev. Immunol. 18, 975-1026.
-
(2000)
Annu. Rev. Immunol.
, vol.18
, pp. 975-1026
-
-
Hayday, A.C.1
-
18
-
-
0027476097
-
Divergent evolution of T cell repertoires: Extensive diversity and developmentally regulated expression of the sheepgammadelta T cell receptor
-
Hein,W.R., Dudler, L., 1993. Divergent evolution of T cell repertoires: extensive diversity and developmentally regulated expression of the sheepgammadelta T cell receptor. EMBO J. 12, 715-724.
-
(1993)
EMBO J.
, vol.12
, pp. 715-724
-
-
Hein, W.R.1
Dudler, L.2
-
19
-
-
33645460229
-
Bovine T cell receptor gamma variable and constant genes: Combinatorial usage by circulating gammadelta T cells
-
Herzig, C., Blumerman, S., Lefranc, M.P., Baldwin, C., 2006. Bovine T cell receptor gamma variable and constant genes: combinatorial usage by circulating gammadelta T cells. Immunogenetics 58, 138-151.
-
(2006)
Immunogenetics
, vol.58
, pp. 138-151
-
-
Herzig, C.1
Blumerman, S.2
Lefranc, M.P.3
Baldwin, C.4
-
20
-
-
0024691453
-
V(D)J recombination: A functional definition of the joining signals
-
Hesse, J.E., Lieber, M.R., Mizuuchi, K., Gellert, M., 1989. V(D)J recombination: a functional definition of the joining signals. Genes Dev. 3, 1053-1061.
-
(1989)
Genes Dev.
, vol.3
, pp. 1053-1061
-
-
Hesse, J.E.1
Lieber, M.R.2
Mizuuchi, K.3
Gellert, M.4
-
21
-
-
0024234855
-
CLUSTAL: A package for performing multiple sequence alignments on a microcomputer
-
Higgins, D.G., Sharp, P.M., 1988.CLUSTAL: a package for performing multiple sequence alignments on a microcomputer. Gene 73, 237-244.
-
(1988)
Gene
, vol.73
, pp. 237-244
-
-
Higgins, D.G.1
Sharp, P.M.2
-
22
-
-
0025019254
-
Homing of a gamma delta thymocyte subset with homogeneous T-cell receptors to mucosal epithelia
-
Itohara, S., Farr, A.G., Lafaille, J.J., Bonneville, M., Takagaki, Y., Haas, W., Tonegawa, S., 1990. Homing of a gamma delta thymocyte subset with homogeneous T-cell receptors to mucosal epithelia. Nature 343, 747-754.
-
(1990)
Nature
, vol.343
, pp. 747-754
-
-
Itohara, S.1
Farr, A.G.2
Lafaille, J.J.3
Bonneville, M.4
Takagaki, Y.5
Haas, W.6
Tonegawa, S.7
-
23
-
-
0023872328
-
Specificity and function of T cells bearing gamma delta receptors
-
Janeway Jr., C.A., Jones, B., Hayday, A., 1988. Specificity and function of T cells bearing gamma delta receptors. Immunol. Today 9, 73-77.
-
(1988)
Immunol. Today
, vol.9
, pp. 73-77
-
-
Janeway Jr., C.A.1
Jones, B.2
Hayday, A.3
-
24
-
-
33748157784
-
Gammadelta T cells-innate immune lymphocytes?
-
Konigshofer, Y., Chien, Y.H., 2006. Gammadelta T cells-innate immune lymphocytes? Curr. Opin. Immunol. 18, 527-533.
-
(2006)
Curr. Opin. Immunol.
, vol.18
, pp. 527-533
-
-
Konigshofer, Y.1
Chien, Y.H.2
-
25
-
-
0033213961
-
Characterization of an avian (Gallus gallus domesticus) TCR alpha delta gene locus
-
Kubota, T., Wang, J., Gobel, T.W., Hockett, R.D., Cooper, M.D., Chen, C.H., 1999. Characterization of an avian (Gallus gallus domesticus) TCR alpha delta gene locus. J. Immunol. 163, 3858-3866.
-
(1999)
J. Immunol.
, vol.163
, pp. 3858-3866
-
-
Kubota, T.1
Wang, J.2
Gobel, T.W.3
Hockett, R.D.4
Cooper, M.D.5
Chen, C.H.6
-
26
-
-
0025668510
-
Genetic organization of the human T-cell receptor gamma and delta loci
-
Lefranc, M.P., Rabbitts, T.H., 1990. Genetic organization of the human T-cell receptor gamma and delta loci. Res. Immunol. 141, 565-577.
-
(1990)
Res. Immunol.
, vol.141
, pp. 565-577
-
-
Lefranc, M.P.1
Rabbitts, T.H.2
-
27
-
-
0024420399
-
A large proportion of bovine T cells express the gamma delta T cell receptor and show a distinct tissue distribution and surface phenotype
-
Mackay, C.R., Hein, W.R., 1989. A large proportion of bovine T cells express the gamma delta T cell receptor and show a distinct tissue distribution and surface phenotype. Int. Immunol. 1, 540-545.
-
(1989)
Int. Immunol.
, vol.1
, pp. 540-545
-
-
MacKay, C.R.1
Hein, W.R.2
-
28
-
-
0034885493
-
Exon-intron organization of TRGC genes in sheep
-
Miccoli, M.C., Lipsi, M.R., Massari, S., Lanave, C., Ciccarese, S., 2001. Exon-intron organization of TRGC genes in sheep. Immunogenetics 53, 416-422.
-
(2001)
Immunogenetics
, vol.53
, pp. 416-422
-
-
Miccoli, M.C.1
Lipsi, M.R.2
Massari, S.3
Lanave, C.4
Ciccarese, S.5
-
29
-
-
0041670912
-
Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus
-
Miccoli, M.C., Antonacci, R., Vaccarelli, G., Lanave, C., Massari, S., Cribiu, E.P., Ciccarese, S., 2003. Evolution of TRG clusters in cattle and sheep genomes as drawn from the structural analysis of the ovine TRG2@ locus. J. Mol. Evol. 57, 52-62.
-
(2003)
J. Mol. Evol.
, vol.57
, pp. 52-62
-
-
Miccoli, M.C.1
Antonacci, R.2
Vaccarelli, G.3
Lanave, C.4
Massari, S.5
Cribiu, E.P.6
Ciccarese, S.7
-
30
-
-
0037443416
-
The four TCR genes of teleost fish: The cDNA and genomic DNA analysis of Japanese flounder (Paralichthys olivaceus) TCR alpha-, beta-, gamma-, and delta-chains
-
Nam, B.H., Hirono, I., Aoki, T., 2003. The four TCR genes of teleost fish: the cDNA and genomic DNA analysis of Japanese flounder (Paralichthys olivaceus) TCR alpha-, beta-, gamma-, and delta-chains. J. Immunol. 170, 3081-3090.
-
(2003)
J. Immunol.
, vol.170
, pp. 3081-3090
-
-
Nam, B.H.1
Hirono, I.2
Aoki, T.3
-
31
-
-
33644541795
-
A physical map of the Atlantic salmon Salmo salar
-
Ng, S.H., Artieri, C.G., Bosdet, I.E., Chiu, R., Danzmann, R.G., Davidson, W.S., Ferguson, M.M., Fjell, C.D., Hoyheim, B., Jones, S.J., de Jong, P.J., Koop, B.F., Krzywinski, M.I., Lubieniecki, K., Marra, M.A., Mitchell, L.A., Mathewson, C., Osoegawa, K., Parisotto, S.E., Phillips, R.B., Rise, M.L., von Schalburg, K.R., Schein, J.E., Shin, H., Siddiqui, A., Thorsen, J., Wye, N., Yang, G., Zhu, B., 2005. A physical map of the Atlantic salmon, Salmo salar. Genomics 84, 396-404.
-
(2005)
Genomics
, vol.84
, pp. 396-404
-
-
Ng, S.H.1
Artieri, C.G.2
Bosdet, I.E.3
Chiu, R.4
Danzmann, R.G.5
Davidson, W.S.6
Ferguson, M.M.7
Fjell, C.D.8
Hoyheim, B.9
Jones, S.J.10
De Jong, P.J.11
Koop, B.F.12
Krzywinski, M.I.13
Lubieniecki, K.14
Marra, M.A.15
Mitchell, L.A.16
Mathewson, C.17
Osoegawa, K.18
Parisotto, S.E.19
Phillips, R.B.20
Rise, M.L.21
Von Schalburg, K.R.22
Schein, J.E.23
Shin, H.24
Siddiqui, A.25
Thorsen, J.26
Wye, N.27
Yang, G.28
Zhu, B.29
more..
-
32
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
Page, R.D., 1996. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357-358.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
33
-
-
0029895150
-
Structure and diversity of the TCR alpha-chain in a teleost fish
-
Partula, S., de Guerra, A., Fellah, J.S., Charlemagne, J., 1996. Structure and diversity of the TCR alpha-chain in a teleost fish. J. Immunol. 157, 207-212.
-
(1996)
J. Immunol.
, vol.157
, pp. 207-212
-
-
Partula, S.1
De Guerra, A.2
Fellah, J.S.3
Charlemagne, J.4
-
34
-
-
0030890117
-
Alpha, beta, gamma, and delta T cell antigen receptor genes arose early in vertebrate phylogeny
-
Rast, J.P., Anderson, M.K., Strong, S.J., Luer, C., Litman, R.T., Litman, G.W., 1997. Alpha, beta, gamma, and delta T cell antigen receptor genes arose early in vertebrate phylogeny. Immunity 6, 37631.
-
(1997)
Immunity
, vol.6
, pp. 37631
-
-
Rast, J.P.1
Anderson, M.K.2
Strong, S.J.3
Luer, C.4
Litman, R.T.5
Litman, G.W.6
-
35
-
-
0033959009
-
The evolution of vertebrate antigen receptors: A phylogenetic approach
-
Richards, M.H., Nelson, J.L., 2000. The evolution of vertebrate antigen receptors: a phylogenetic approach. Mol. Biol. Evol. 17, 146-155.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 146-155
-
-
Richards, M.H.1
Nelson, J.L.2
-
36
-
-
0028069388
-
CDR3 length in antigen-specific immune receptors
-
Rock, E.P., Sibbald, P.R., Davis, M.M., Chien, Y.H., 1994. CDR3 length in antigen-specific immune receptors. J. Exp. Med. 179, 323-328.
-
(1994)
J. Exp. Med.
, vol.179
, pp. 323-328
-
-
Rock, E.P.1
Sibbald, P.R.2
Davis, M.M.3
Chien, Y.H.4
-
37
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
38
-
-
0030448649
-
Characterization of avian T-cell receptor gamma genes
-
Six, A., Rast, J.P., McCormack, W.T., Dunon, D., Courtois, D., Li, Y., Chen, C.H., Cooper,M.D., 1996. Characterization of avian T-cell receptor gamma genes. Proc. Natl. Acad. Sci. U.S.A. 93, 15329-15334.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 15329-15334
-
-
Six, A.1
Rast, J.P.2
McCormack, W.T.3
Dunon, D.4
Courtois, D.5
Li, Y.6
Chen, C.H.7
Cooper, M.D.8
-
39
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
Sonnhammer, E.L., Durbin, R., 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 167, 1-10.
-
(1995)
Gene
, vol.167
, pp. 1-10
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
40
-
-
0023845959
-
A large subpopulation of avian T cells express a homologue of the mammalian T gamma/delta receptor
-
Sowder, J.T., Chen, C.L., Ager, L.L., Chan, M.M., Cooper,M.D., 1988. A large subpopulation of avian T cells express a homologue of the mammalian T gamma/delta receptor. J. Exp. Med. 167, 315-322.
-
(1988)
J. Exp. Med.
, vol.167
, pp. 315-322
-
-
Sowder, J.T.1
Chen, C.L.2
Ager, L.L.3
Chan, M.M.4
Cooper, M.D.5
-
41
-
-
25444436230
-
A highly redundant BAC library of Atlantic salmon (Salmo salar): An important tool for salmon projects
-
Thorsen, J., Zhu, B., Frengen, E., Osoegawa, K., de Jong, P.J., Koop, B.F., Davidson, W.S., Hoyheim, B., 2005. A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics 6, 50.
-
(2005)
BMC Genomics
, vol.6
, pp. 50
-
-
Thorsen, J.1
Zhu, B.2
Frengen, E.3
Osoegawa, K.4
De Jong, P.J.5
Koop, B.F.6
Davidson, W.S.7
Hoyheim, B.8
-
42
-
-
0023857712
-
A unique V-J-C-rearranged gene encodes a gamma protein expressed on the majority of CD3+ T cell receptor-alpha/beta- circulating lymphocytes
-
Triebel, F., Faure, F., Graziani, M., Jitsukawa, S., Lefranc, M.P., Hercend, T., 1988. A unique V-J-C-rearranged gene encodes a gamma protein expressed on the majority of CD3+ T cell receptor-alpha/beta- circulating lymphocytes. J. Exp. Med. 167, 694-699.
-
(1988)
J. Exp. Med.
, vol.167
, pp. 694-699
-
-
Triebel, F.1
Faure, F.2
Graziani, M.3
Jitsukawa, S.4
Lefranc, M.P.5
Hercend, T.6
-
43
-
-
24744466710
-
Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes
-
Vaccarelli, G., Miccoli, M.C., Lanave, C., Massari, S., Cribiu, E.P., Ciccarese, S., 2005. Genomic organization of the sheep TRG1@ locus and comparative analyses of Bovidae and human variable genes. Gene 357, 103-114.
-
(2005)
Gene
, vol.357
, pp. 103-114
-
-
Vaccarelli, G.1
Miccoli, M.C.2
Lanave, C.3
Massari, S.4
Cribiu, E.P.5
Ciccarese, S.6
-
44
-
-
0027296085
-
Organization of the murine T-cell receptor gamma locus
-
Vernooij, B.T., Lenstra, J.A., Wang, K., Hood, L., 1993. Organization of the murine T-cell receptor gamma locus. Genomics 17, 566-574.
-
(1993)
Genomics
, vol.17
, pp. 566-574
-
-
Vernooij, B.T.1
Lenstra, J.A.2
Wang, K.3
Hood, L.4
-
45
-
-
36549032762
-
Striking antigen recognition diversity in the Atlantic salmon T-cell receptor alpha/delta locus
-
Yazawa, R., Cooper, G.A., Hunt, P., Beetz-Sargent, M., Robb, A., Conrad, M., McKinnel, L., So, S., Jantzen, S., Phillips, R.B., Davidson,W.S.,Koop, B.F., 2008. Striking antigen recognition diversity in the Atlantic salmon T-cell receptor alpha/delta locus. Dev. Comp. Immunol. 32, 204-212.
-
(2008)
Dev. Comp. Immunol.
, vol.32
, pp. 204-212
-
-
Yazawa, R.1
Cooper, G.A.2
Hunt, P.3
Beetz-Sargent, M.4
Robb, A.5
Conrad, M.6
McKinnel, L.7
So, S.8
Jantzen, S.9
Phillips, R.B.10
Davidson, W.S.11
Koop, B.F.12
|