Cultivable bacterial composition and BIOLOG catabolic diversity of biofilm communities developed on Phragmites australis

Aquatic Botany

Volumn 88, Issue 3, 2008, Pages 211-218

  Rusznyák, Anna ^a   Vladár, Péter ^a   Molnár, Piroska ^a   Reskóné, Mária N ^b   Kiss, Gábor ^b   Márialigeti, Károly ^a   Borsodi, Andrea K ^a  

^a EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^b Kozep dunantuli Kornyezetvedelmi es Vizugyi Igazgatosag Szekesfehervar   (Hungary)

Author keywords

16S rDNA sequence analysis; Biofilm; BIOLOG; Phragmites australis

Indexed keywords

BACTERIUM; BIOFILM; CARBON; CATABOLISM; COMMUNITY COMPOSITION; GRASS; METABOLISM; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; OPEN WATER; SPECIES DIVERSITY;

CENTRAL EUROPE; EURASIA; EUROPE; FEJER; HUNGARY; LAKE VELENCEI;

AEROMONAS; ARTHROBACTER; BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); DEFLUVIBACTER; KLEBSIELLA; KOCURIA; MARINIBACILLUS; MICROBACTERIUM; MICROCOCCUS; PHRAGMITES AUSTRALIS; PSEUDOMONAS; RHODOBACTER; RHODOCOCCUS; SERRATIA;

EID: 39649095191     PISSN: 03043770     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquabot.2007.10.007     Document Type: Article

References (38)

1. Ács E., Borsodi A.K., Makk J., Molnár P., Mózes A., Rusznyák A., Reskóné M.N., and Kiss K.T. Algological and bacteriological investigations on reed periphyton in Lake Velencei, Hungary. Hydrobiologia 506-509 (2003) 549-557
2. Ács, É., Borsodi, A.K., Kiss, É., Kiss, K.T., Szabó, K.É., Vladár, P., Várbíró, G., Záray, Gy. Comparative algological and bacteriological examinations on biofilms developed on different substrata in a shallow soda lake. Aquat. Ecol., doi:10.1007/s10452-007-9132-0, in press.
3. Ágoston-Szabó E., Dinka M., Némedi L., and Horváth G. Decomposition of Phragmites australis rhizome in a shallow lake. Aquat. Bot. 85 (2006) 309-316
4. Barrow G.I., and Feltham R.K.A. Cowan and Steels's Manual for the Identification of Medical Bacteria (2003), Cambridge University Press, Cambridge
5. Borsodi A.K., Farkas I., and Kurdi P. Numerical analysis of planktonic and reed biofilm bacterial communities of Lake Ferto{combining double acute accent} (Neusiedlersee, Hungary/Austria). Water Res. 32 (1998) 1831-1840
6. Borsodi A.K., Vladár P., Cech G., Gedeon G., Beszteri B., Micsinai A., Reskóné N.M., and Márialigeti K. Bacterial activities in the sediment of Lake Velencei, Hungary. Hydrobiologia 506-509 (2003) 721-728
7. Borsodi A.K., Micsinai A., Rusznyák A., Vladár P., Kovács G., Tóth E.M., and Márialigeti K. Diversity of alkaliphilic and alkalitolerant bacteria cultivated from decomposing reed rhizomes in a Hungarian soda lake. Microb. Ecol. 50 (2005) 9-18
8. Borsodi A.K., Makk J., Rusznyák A., Vajna B., Taba Gy., and Márialigeti K. Phenotypic characterization and molecular taxonomic studies on Bacillus and related isolates from Phragmites australis periphyton. Aquat. Bot. 86 (2007) 243-252
9. Den Hartog C., Kvet J., and Sukopp H. Reed: a common species in decline. Aquat. Bot. 35 (1989) 1-4
10. Felske A., Wolterink A., van Lis R., de Vos W.M., and Akkermans A.D.L. Searching for predominant soil bacteria: 16S rDNA cloning versus strain cultivation. FEMS Microbiol. Ecol. 30 (1999) 137-145
11. Garland J.L., and Mills A.L. Classification and characterization of heterotrophic microbial communities on the basis of pattern of community-level sole-carbon-source utilization. Appl. Environ. Microbiol. 57 (1991) 2351-2359
12. Haack S.K., Garchow H., Klug M.J., and Forney L.J. Analysis of factors affecting the accuracy, reproducibility, and interpretation of microbial community carbon source utilization patterns. Appl. Environ. Microbiol. 61 (1995) 1458-1468
13. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
14. Konopka A., Oliver L., and Turco R.F. The use of substrate utilization patterns in environmental and ecological microbiology. Microb. Ecol. 35 (1998) 103-115
15. Kovács G., Burghardt J., Pradella S., Schumann P., Stackebrandt E., and Márialigeti K. Kocuria palustris sp. nov. and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia). Int. J. Syst. Bacteriol. 49 (1999) 167-173
16. Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), John Wiley and Sons, Chichester 115-147
17. Larkin M.J., Kulakov L.A., and Allen C.R. Biodegradation and Rhodococcus-masters of catabolic versatility. Curr. Opin. Biotechnol. 16 (2005) 282-290
18. Madigan M., Cox S.S., and Stegemann R.A. Nitrogen fixation and nitrogenase activities in members of the family Rhodospirillaceae. J. Bacteriol. 157 (1984) 73-78
19. Makk J., Ács E., Márialigeti K., and Kovács G. Investigations on the Danube gravel-biofilm diatom-associated bacterial communities. Biologia 58 (2003) 729-742
20. Micsinai A., Borsodi A.K., Csengeri V., Horváth A., Oravecz O., Nikolausz M., Reskóné M.N., and Márialigeti K. Rhizome-associated bacterial communities of healthy and declining reed stands in Lake Velencei, Hungary. Hydrobiologia 506-509 (2003) 707-713
21. Monfort P., and Baleux B. Dynamics of Aeromonas hydrophila, Aeromonas sobria and Aeromonas caviae in a sewage treatment pond. Appl. Environ. Microbiol. 56 (1990) 2007-2011
22. Ostendorp W. Die-back of reeds in Europe-a critical review of literature. Aquat. Bot. 5 (1989) 5-26
23. Podani, J., 2001. SYN-TAX 2000 Computer programs for data analysis in ecology an systematics (user's manual).
24. Podschunn R., and Ullmann U. Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors. Clin. Microbiol. Rev. 11 (1998) 589-603
25. Pollard P.C., Flood J.A., and Ashbolt N.J. The direct measurement of bacterial growth in biofilm of emergent plants (Schoenoplectus) of an artificial wetland. Wat. Sci. Technol. 32 (1995) 251-256
26. Preston-Mafham J., Boddy L., and Randerson P.F. Analysis of microbial community functional diversity using sole-carbon-source utilization profiles-a critique. FEMS Microbiol. Ecol. 42 (2002) 1-14
27. Reskóné N.M., and Borsodi A.K. Long-term investigations on the changes of the MPN values of bacterial communities participating in the sulphur cycle in Lake Velencei, Hungary. Hydrobiologia 506-509 (2003) 715-720
28. Rhodes M.W., and Kator H. Seasonal occurence of mesophilic Aeromonas spp. as a function of biotype and water quality in temperate freshwater lakes. Water Res. 28 (1994) 2241-2251
29. Roberts D.P., Lohrke S.M., Meyerb S.L.F., Buyer J.S., Bowers J.H., Bakerd C.J., Lie W., de Souzaf J.T., Lewis J.A., and Chungg S. Biocontrol agents applied individually and in combination for suppression of soilborne diseases of cucumber. Crop. Prot. 24 (2005) 141-155
30. Saitou N., and Nei M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-452
31. Schmitz R.A., Klopprogge K., and Grabbe R. Regulation of nitrogen fixation in Klebsiella pneumoniae and Azotobacter vinelandii: NiFL, transducing two environmental signals to the nif transcriptional activator NifA. J. Mol. Microbiol. Biotechnol. 4 (2002) 235-242
32. Sinha S.N., and Banerjee R.D. Ecological role of thiosulfate and sulfide utilizing purple nonsulfur bacteria of a riverine ecosystem. FEMS Microbiol. Ecol. 24 (1997) 211-220
33. Smibert R.M., and Krieg N.R. Phenotypic characterization. In: Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. (Eds). Methods for General and Molecular Bacteriology (1994), American Society for Microbiology, Washington, DC 603-711
34. Smit E., Leeflang P., Gommans S., van den Broek J., van Mil S., and Wernars K. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microbiol. 67 (2001) 2284-2291
35. Stoodley P., Sauer K., Davies D.G., and Costerton J.W. Biofilms as complex differentiated communities. Annu. Rev. Microbiol. 56 (2002) 187-209
36. Strunk O., and Ludwig W. ARB-A Software Environment for Sequence Data (1997), Department of Microbiology, Technical University of Munich, Germany
37. Tixier C., Sancelme M., Aït-Aïssa S., Widehem P., Bonnemoy F., Cuer A., Truffaut N., and Veschambre H. Biotransformation of phenylurea herbicides by a soil bacterial strain, Arthrobacter sp. N2: structure, exotoxicity and fate of diuron metabolite with soil fungi. Chemosphere 46 (2002) 519-526
38. Wand H., Laht T., Peters M., Becker P.M., Stottmeister U., and Heinaru A. Monitoring of biodegradative Pseudomonas putida strains in aquatic environments using molecular techniques. Microb. Ecol. 33 (1997) 124-133