-
1
-
-
0032576722
-
Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands
-
White,S., Szewczyk,J.W., Turner,J.M., Baird,E.E. and Dervan,P.B. (1998) Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands. Nature, 391, 468-471.
-
(1998)
Nature
, vol.391
, pp. 468-471
-
-
White, S.1
Szewczyk, J.W.2
Turner, J.M.3
Baird, E.E.4
Dervan, P.B.5
-
2
-
-
4143080522
-
Energetics of drug-DNA interactions
-
Chaires,J.B. (1997) Energetics of drug-DNA interactions. Biopolymers 44, 201-215.
-
(1997)
Biopolymers
, vol.44
, pp. 201-215
-
-
Chaires, J.B.1
-
3
-
-
0036647051
-
Thermodynamics of drug-DNA interactions
-
Haq,I. (2002) Thermodynamics of drug-DNA interactions. Arch. Biochem. Biophys., 403, 1-15.
-
(2002)
Arch. Biochem. Biophys
, vol.403
, pp. 1-15
-
-
Haq, I.1
-
4
-
-
27544447466
-
Regulation of Gene expression by synthetic DNA-binding ligands
-
Dervan,P.B., Poulin-Kerstien,A.T., Fechter,E.J. and Edelson,B.S. (2005) Regulation of Gene expression by synthetic DNA-binding ligands. Top. Curr. Chem., 253, 1-31.
-
(2005)
Top. Curr. Chem
, vol.253
, pp. 1-31
-
-
Dervan, P.B.1
Poulin-Kerstien, A.T.2
Fechter, E.J.3
Edelson, B.S.4
-
6
-
-
0035042617
-
Recent developments in sequence selective minor groove effectors
-
Reddy,B.S., Sharma,S.K. and Lown,J.W. (2001) Recent developments in sequence selective minor groove effectors. Curr. Med. Chem., 8 475-508.
-
(2001)
Curr. Med. Chem
, vol.8
, pp. 475-508
-
-
Reddy, B.S.1
Sharma, S.K.2
Lown, J.W.3
-
8
-
-
0033887479
-
Designed sequence-specific minor groove ligands
-
Wemmer,D.E. (2000) Designed sequence-specific minor groove ligands. Annu. Rev. Biophys. Biomol. Struct., 29, 439-461.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct
, vol.29
, pp. 439-461
-
-
Wemmer, D.E.1
-
9
-
-
0034616955
-
A thermodynamic and structural analysis of DNA minor-groove complex formation
-
Mazur,S., Tanious,F.A., Ding,D., Kumar,A., Boykin,D.W., Simpson,I.J., Neidle,S. and Wilson,W.D. (2000) A thermodynamic and structural analysis of DNA minor-groove complex formation. J. Mol. Biol., 300, 321-337.
-
(2000)
J. Mol. Biol
, vol.300
, pp. 321-337
-
-
Mazur, S.1
Tanious, F.A.2
Ding, D.3
Kumar, A.4
Boykin, D.W.5
Simpson, I.J.6
Neidle, S.7
Wilson, W.D.8
-
11
-
-
4143139849
-
Energetic diversity of DNA minor-groove recognition by small molecules displayed through some model ligand-DNA systems
-
Lah,J. and Vesnaver,G. (2004) Energetic diversity of DNA minor-groove recognition by small molecules displayed through some model ligand-DNA systems. J. Mol. Biol., 342, 73-89.
-
(2004)
J. Mol. Biol
, vol.342
, pp. 73-89
-
-
Lah, J.1
Vesnaver, G.2
-
12
-
-
0034622566
-
Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT*GC sequences with at most five or three successive AT base pairs
-
Lah,J. and Vesnaver,G. (2000) Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT*GC sequences with at most five or three successive AT base pairs. Biochemistry, 39, 9317-9326.
-
(2000)
Biochemistry
, vol.39
, pp. 9317-9326
-
-
Lah, J.1
Vesnaver, G.2
-
13
-
-
33750170036
-
Competition of some minor groove binders for a single DNA binding site
-
Lah,J., Carl,N., Drobnak,I., Sumiga,B. and Vesnaver,G. (2006) Competition of some minor groove binders for a single DNA binding site. Acta Chim. Slov., 53, 284-291.
-
(2006)
Acta Chim. Slov
, vol.53
, pp. 284-291
-
-
Lah, J.1
Carl, N.2
Drobnak, I.3
Sumiga, B.4
Vesnaver, G.5
-
14
-
-
0022587259
-
Nonintercalating DNA-binding ligands: Specificity of the interaction and their tools in biophysical, biochemical and biological investigations of the genetic material
-
Zimmer,C. and Wahnert,U. (1986) Nonintercalating DNA-binding ligands: specificity of the interaction and their tools in biophysical, biochemical and biological investigations of the genetic material. Prog. Biophys. Mol. Biol., 47, 31-112.
-
(1986)
Prog. Biophys. Mol. Biol
, vol.47
, pp. 31-112
-
-
Zimmer, C.1
Wahnert, U.2
-
15
-
-
0031574354
-
Interaction of minor groove binding ligands with long AT tracts
-
Abu-Daya,A. and Fox,K.R. (1997) Interaction of minor groove binding ligands with long AT tracts. Nucleic Acids Res., 25, 4962-4969.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4962-4969
-
-
Abu-Daya, A.1
Fox, K.R.2
-
16
-
-
0035253618
-
Induced fit DNA recognition by a minor groove binding analogue of hoechst 33258: Fluctuations in DNA A tract structure investigated by NMR and molecular dynamics simulations
-
Bostock-Smith,C.E., Harris,S.A., Laughton,C.A. and Searle,M.S. (2001) Induced fit DNA recognition by a minor groove binding analogue of hoechst 33258: Fluctuations in DNA A tract structure investigated by NMR and molecular dynamics simulations. Nucleic Acids Res., 29, 693-702.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 693-702
-
-
Bostock-Smith, C.E.1
Harris, S.A.2
Laughton, C.A.3
Searle, M.S.4
-
17
-
-
13844316469
-
Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site
-
Dolenc,J., Oostenbrink,C., Koller,J. and van Gunsteren,W.F. (2005) Molecular dynamics simulations and free energy calculations of netropsin and distamycin binding to an AAAAA DNA binding site. Nucleic Acids Res., 33, 725-733.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 725-733
-
-
Dolenc, J.1
Oostenbrink, C.2
Koller, J.3
van Gunsteren, W.F.4
-
18
-
-
0014725117
-
Oligonucleotide interactions. 3. Circular dichroisin studies of the conformation of deoxyoligonucleotides
-
Cantor,C.R., Warshaw,M.M. and Shapiro,H. (1970) Oligonucleotide interactions. 3. Circular dichroisin studies of the conformation of deoxyoligonucleotides. Biopolymers, 9, 1059-1077.
-
(1970)
Biopolymers
, vol.9
, pp. 1059-1077
-
-
Cantor, C.R.1
Warshaw, M.M.2
Shapiro, H.3
-
19
-
-
0028944342
-
Interaction of minor groove ligands to an AAATT/ AATTT site: Correlation of thermodynamic characterization and solution structure
-
Rentzeperis,D., Marky,L.A., Dwyer,T.J., Geierstanger,B.H., Pelton,J.G. and Wemmer,D.E. (1995) Interaction of minor groove ligands to an AAATT/ AATTT site: Correlation of thermodynamic characterization and solution structure. Biochemistry, 34, 2937-2945.
-
(1995)
Biochemistry
, vol.34
, pp. 2937-2945
-
-
Rentzeperis, D.1
Marky, L.A.2
Dwyer, T.J.3
Geierstanger, B.H.4
Pelton, J.G.5
Wemmer, D.E.6
-
20
-
-
0023374851
-
Origins of netropsin binding affinity and specificity: Correlations of thermodynamic and structural data
-
Marky,L.A. and Breslauer,K.J. (1987) Origins of netropsin binding affinity and specificity: Correlations of thermodynamic and structural data. Proc. Natl Acad. Sci. USA, 84, 4359-4363.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 4359-4363
-
-
Marky, L.A.1
Breslauer, K.J.2
-
21
-
-
0042090472
-
-
Lah,N., Lah,J., Zegers.I., Wyns,L. and Messens,J. (2003) Specific potassium binding stabilizes pI258 arsenate reductase from Staphylococcus aureus. J. Biol. Chem., 278, 24673-24679.
-
Lah,N., Lah,J., Zegers.I., Wyns,L. and Messens,J. (2003) Specific potassium binding stabilizes pI258 arsenate reductase from Staphylococcus aureus. J. Biol. Chem., 278, 24673-24679.
-
-
-
-
22
-
-
27144485365
-
Erythropoietin unfolding: Thermodynamics and its correlation with structural features
-
Lah,J., Prislan,I., Kržan,B., Salobir,M., Francky,A. and Vesnaver,G. (2005) Erythropoietin unfolding: Thermodynamics and its correlation with structural features. Biochemistry, 44, 13883-13892.
-
(2005)
Biochemistry
, vol.44
, pp. 13883-13892
-
-
Lah, J.1
Prislan, I.2
Kržan, B.3
Salobir, M.4
Francky, A.5
Vesnaver, G.6
-
23
-
-
0004161838
-
-
Cambridge University Press, Oxford, pp
-
Press,W.H., Flannery,B.P., Teukolsky,S.A. and Vetterling,W.T. (1992) Numerical Recipes. Cambridge University Press, Oxford, pp. 650-694.
-
(1992)
Numerical Recipes
, pp. 650-694
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
24
-
-
0030875847
-
Thermodynamics and NMR of internal G.T mismatches in DNA
-
Allawi,H.T. and SantaLucia,J. Jr (1997) Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry, 36, 10581-10594.
-
(1997)
Biochemistry
, vol.36
, pp. 10581-10594
-
-
Allawi, H.T.1
SantaLucia Jr, J.2
-
25
-
-
33746312998
-
binding of netropsin and 4.6-diamidino-2-phenylindole to an A2T2 DNA hairpin: A comparison of biophysical techniques
-
Freyer,M.W., Buscaglia,R., Nguyen,B., Wilson,W.D. and Lewis,E.A. (2006) binding of netropsin and 4.6-diamidino-2-phenylindole to an A2T2 DNA hairpin: A comparison of biophysical techniques. Anal. Biochem., 355, 259-266.
-
(2006)
Anal. Biochem
, vol.355
, pp. 259-266
-
-
Freyer, M.W.1
Buscaglia, R.2
Nguyen, B.3
Wilson, W.D.4
Lewis, E.A.5
-
26
-
-
33846621126
-
Binding of netropsin to several DNA constructs: Evidence for at least two diffeient 1:1 complexes formed from an -AATT-containing ds-DNA construct and a single minor groove binding ligand
-
Freyer,M.W., Buscaglia,R., Cashman,D., Hyslop,S., Wilson,W.D., Chaires,J.B. and Lewis,E.A. (2007) Binding of netropsin to several DNA constructs: Evidence for at least two diffeient 1:1 complexes formed from an -AATT-containing ds-DNA construct and a single minor groove binding ligand. Biophys. Chem., 126, 186-196.
-
(2007)
Biophys. Chem
, vol.126
, pp. 186-196
-
-
Freyer, M.W.1
Buscaglia, R.2
Cashman, D.3
Hyslop, S.4
Wilson, W.D.5
Chaires, J.B.6
Lewis, E.A.7
-
27
-
-
34047211804
-
Break in the heat capacity change at 303K for complex binding of netropsin to AATT containing hairpin DNA constructs
-
Freyer,M.W., Buscaglia,R., Hollingsworth,A., Ramos,J., Blynn,M., Pratt,R., Wilson,W.D. and Lewis,E.A. (2007) Break in the heat capacity change at 303K for complex binding of netropsin to AATT containing hairpin DNA constructs. Biophys. J., 92, 2516-2522.
-
(2007)
Biophys. J
, vol.92
, pp. 2516-2522
-
-
Freyer, M.W.1
Buscaglia, R.2
Hollingsworth, A.3
Ramos, J.4
Blynn, M.5
Pratt, R.6
Wilson, W.D.7
Lewis, E.A.8
-
28
-
-
8444231721
-
Non-B DNA conformations, genomic rearrangements, and human disease
-
Bacolla,A. and Wells,A.D. (2004) Non-B DNA conformations, genomic rearrangements, and human disease. J. Biol. Chem., 279, 47411-47414.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 47411-47414
-
-
Bacolla, A.1
Wells, A.D.2
-
29
-
-
0344237354
-
Hairpin-duplex equilibrium reflected in the A→B transition in an undecamer quasi-palindrome present in the locus control region of the human beta-globin gene cluster
-
Kaushik,M., Kukreti,R., Grover,D., Brahmachari,S.K. and Kukreti,S. (2003) Hairpin-duplex equilibrium reflected in the A→B transition in an undecamer quasi-palindrome present in the locus control region of the human beta-globin gene cluster. Nucleic Acids Res., 31, 6904-6915.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6904-6915
-
-
Kaushik, M.1
Kukreti, R.2
Grover, D.3
Brahmachari, S.K.4
Kukreti, S.5
-
30
-
-
0029031144
-
Relative stabilities of DNA three-way, four-way and five-way junctions (multihelix junction loops): Unpaired nucleotides can be stabilizing or destabilizing
-
Kadrmas,J.L., Ravin,A.J. and Leontis,N.B. (1995) Relative stabilities of DNA three-way, four-way and five-way junctions (multihelix junction loops): Unpaired nucleotides can be stabilizing or destabilizing. Nucleic Acids Res., 23, 2212-2222.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 2212-2222
-
-
Kadrmas, J.L.1
Ravin, A.J.2
Leontis, N.B.3
-
31
-
-
33846899951
-
Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides
-
Nakano,S., Kirihata,T., Fujii,S., Sakai,H., Kuwahara,M., Sawai,H. and Sugimoto,N. (2007) Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides. Nucleic Acids Res., 35, 486-494.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 486-494
-
-
Nakano, S.1
Kirihata, T.2
Fujii, S.3
Sakai, H.4
Kuwahara, M.5
Sawai, H.6
Sugimoto, N.7
-
32
-
-
0020579962
-
Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): Evidence for hairpin formation
-
Marky,L.A., Blumenfeld,K.S., Kozlowski,S. and Breslauer,K.J. (1983) Salt-dependent conformational transitions in the self-complementary deoxydodecanucleotide d(CGCAATTCGCG): Evidence for hairpin formation. Biopolymers, 22, 1247-1257.
-
(1983)
Biopolymers
, vol.22
, pp. 1247-1257
-
-
Marky, L.A.1
Blumenfeld, K.S.2
Kozlowski, S.3
Breslauer, K.J.4
-
33
-
-
3042599013
-
The thermodynamics of DNA structural motifs
-
SantaLucia,J. Jr and Hicks,D. (2004) The thermodynamics of DNA structural motifs. Annu. Rev. Biophys, Biomol. Struct., 33, 415-440.
-
(2004)
Annu. Rev. Biophys, Biomol. Struct
, vol.33
, pp. 415-440
-
-
SantaLucia Jr, J.1
Hicks, D.2
-
34
-
-
33846033995
-
Energetics in correlation with structural features: The case of micellization
-
Lah,J., Bešter-Rogač,M., Perger,T.-M. and Vesnaver,G. (2006) Energetics in correlation with structural features: The case of micellization. J. Phys. Chem. B, 110, 23279-23291.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 23279-23291
-
-
Lah, J.1
Bešter-Rogač, M.2
Perger, T.-M.3
Vesnaver, G.4
-
35
-
-
0000159569
-
Protein structure and the energetics of protein stability
-
Robertson,A.D. and Murphy,K.P. (1997) Protein structure and the energetics of protein stability. Chem. Rev., 97, 1251-1267.
-
(1997)
Chem. Rev
, vol.97
, pp. 1251-1267
-
-
Robertson, A.D.1
Murphy, K.P.2
-
36
-
-
33746843687
-
Configurational entropy change of netropsin and distamycin upon DNA minor groove binding
-
Dolenc,J., Baron,R., Oostenbrink,C., Koller,J. and van Gunsteren,W.F. (2006) Configurational entropy change of netropsin and distamycin upon DNA minor groove binding. Biophys. J., 91, 1460-1470.
-
(2006)
Biophys. J
, vol.91
, pp. 1460-1470
-
-
Dolenc, J.1
Baron, R.2
Oostenbrink, C.3
Koller, J.4
van Gunsteren, W.F.5
-
37
-
-
35548970679
-
Stability of a short DNA duplex as a function of temperature: The effect of ΔCp and added salt concentration
-
Drobnak,I., Seruçnik,M., Lah,J. and Vesnaver,G. (2007) Stability of a short DNA duplex as a function of temperature: The effect of ΔCp and added salt concentration. Acta Chim. Slov., 54, 445-451.
-
(2007)
Acta Chim. Slov
, vol.54
, pp. 445-451
-
-
Drobnak, I.1
Seruçnik, M.2
Lah, J.3
Vesnaver, G.4
-
38
-
-
22544445195
-
Netropsin interactions in the minor groove of d(GGCCAATTGG) studied by a combination of resolution enhancement and ab initio calculations
-
Van Hecke,K., Nam,P.C., Nguyen,M.T. and Van Meervelt,L. (2005) Netropsin interactions in the minor groove of d(GGCCAATTGG) studied by a combination of resolution enhancement and ab initio calculations. FEBS J., 272, 3531-3541.
-
(2005)
FEBS J
, vol.272
, pp. 3531-3541
-
-
Van Hecke, K.1
Nam, P.C.2
Nguyen, M.T.3
Van Meervelt, L.4
|