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Volumn 8, Issue 3, 2008, Pages 414-424

Evaluation of reproducibility of protein identification results after multidimensional human serum protein separation

Author keywords

Label free quantification; Multi dimensional protein fractionation; Off gel electrophoresis; Protein identification acceptance criteria; Serum proteome characterization

Indexed keywords

BETA LACTOGLOBULIN; PLASMA PROTEIN;

EID: 39149136230     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700527     Document Type: Article
Times cited : (30)

References (26)
  • 1
    • 12444339443 scopus 로고    scopus 로고
    • The human serum proteome: Display of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins
    • Pieper, R., Gatlin, C. L., Makusky, A. J., Russo, P. S. et al., The human serum proteome: Display of nearly 3700 chromatographically separated protein spots on two-dimensional electrophoresis gels and identification of 325 distinct proteins. Proteomics 2003, 3, 1345-1364.
    • (2003) Proteomics , vol.3 , pp. 1345-1364
    • Pieper, R.1    Gatlin, C.L.2    Makusky, A.J.3    Russo, P.S.4
  • 2
    • 0037116832 scopus 로고    scopus 로고
    • Use of proteomic patterns in serum to identify ovarian cancer
    • Petricoin, E. F., Ardekani, A. M., Hitt, B. A., Levine, P. J. et al., Use of proteomic patterns in serum to identify ovarian cancer. Lancet 2002, 359, 572-577.
    • (2002) Lancet , vol.359 , pp. 572-577
    • Petricoin, E.F.1    Ardekani, A.M.2    Hitt, B.A.3    Levine, P.J.4
  • 4
    • 5444266793 scopus 로고    scopus 로고
    • Serum proteomic profiles suggest celecoxib-modulated targets and response predictors
    • Xiao, Z., Luke, B. T., Izmirlian, G., Umar, A. et al., Serum proteomic profiles suggest celecoxib-modulated targets and response predictors. Cancer Res. 2004, 64, 2904-2909.
    • (2004) Cancer Res , vol.64 , pp. 2904-2909
    • Xiao, Z.1    Luke, B.T.2    Izmirlian, G.3    Umar, A.4
  • 5
    • 11144355338 scopus 로고    scopus 로고
    • Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma
    • Pusztai, L., Gregory, B. W., Baggerly, K. A., Peng, B. et al., Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma. Cancer 2004, 100, 1814-1822.
    • (2004) Cancer , vol.100 , pp. 1814-1822
    • Pusztai, L.1    Gregory, B.W.2    Baggerly, K.A.3    Peng, B.4
  • 6
    • 0346256834 scopus 로고    scopus 로고
    • Monitoring protein expression by proteomics: Human plasma exposed to benzene
    • Joo, W. A., Kang, M. J., Son, W. K., Lee, H. J. et al., Monitoring protein expression by proteomics: Human plasma exposed to benzene. Proteomics 2003, 3, 2402-2411.
    • (2003) Proteomics , vol.3 , pp. 2402-2411
    • Joo, W.A.1    Kang, M.J.2    Son, W.K.3    Lee, H.J.4
  • 7
    • 1542378202 scopus 로고    scopus 로고
    • Analysis of serum proteomic patterns for early cancer diagnosis: Drawing attention to potential problems
    • Diamandis, E. P., Analysis of serum proteomic patterns for early cancer diagnosis: Drawing attention to potential problems. J. Natl. Cancer Inst. 2004, 96, 353-356.
    • (2004) J. Natl. Cancer Inst , vol.96 , pp. 353-356
    • Diamandis, E.P.1
  • 8
    • 33748567134 scopus 로고    scopus 로고
    • Gel-free mass spectrometry-based high throughput proteomics: Tools for studying biological response of proteins and proteomes
    • 81
    • [81 Roe, M. R., Griffin, T. J., Gel-free mass spectrometry-based high throughput proteomics: Tools for studying biological response of proteins and proteomes. Proteomics 2006, 6, 4678-4687.
    • (2006) Proteomics , vol.6 , pp. 4678-4687
    • Roe, M.R.1    Griffin, T.J.2
  • 9
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F. et al., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol. 1999, 17, 994-999.
    • (1999) Nat Biotechnol , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4
  • 10
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H., Sadygov, R. G., Yates, J. R., III, A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
    • (2004) Anal. Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 11
    • 12244270638 scopus 로고    scopus 로고
    • Differential proteomics via probabilistic peptide identification scores
    • Colinge, J., Chiappe, D., Lagache, S., Moniatte, M., Bougueleret, L., Differential proteomics via probabilistic peptide identification scores. Anal. Chem. 2005, 77, 596-606.
    • (2005) Anal. Chem , vol.77 , pp. 596-606
    • Colinge, J.1    Chiappe, D.2    Lagache, S.3    Moniatte, M.4    Bougueleret, L.5
  • 12
    • 34347377132 scopus 로고    scopus 로고
    • Compositional protein analysis of high density lipoproteins in hypercholesterolemia by shotgun LC-MS/MS and probabilistic peptide scoring
    • Heller, M., Schlappritzi, E., Stalder, D., Nuoffer, J. M., Haeberli, A., Compositional protein analysis of high density lipoproteins in hypercholesterolemia by shotgun LC-MS/MS and probabilistic peptide scoring. Mol. Cell. Proteomics 2007, 6, 1059-1072.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1059-1072
    • Heller, M.1    Schlappritzi, E.2    Stalder, D.3    Nuoffer, J.M.4    Haeberli, A.5
  • 13
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: History, character, and diagnostic prospects
    • Anderson, N. L., Anderson, N. G., The human plasma proteome: History, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 11, 845-867.
    • (2002) Mol. Cell. Proteomics , vol.11 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 14
    • 4444275799 scopus 로고    scopus 로고
    • Human serum proteins preseparated by electrophoresis or chromatography followed by tandem mass spectrometry
    • Marshall, J., Jankowski, A., Furesz, S., Kireeva, I. et al., Human serum proteins preseparated by electrophoresis or chromatography followed by tandem mass spectrometry. J. Proteome Res. 2004, 3, 364-382.
    • (2004) J. Proteome Res , vol.3 , pp. 364-382
    • Marshall, J.1    Jankowski, A.2    Furesz, S.3    Kireeva, I.4
  • 15
    • 4444234205 scopus 로고    scopus 로고
    • Multidimensional protein profiling technology and its application to human plasma proteome
    • Fujii, K., Nakano, T., Kawamura, T., Usui, F. et al., Multidimensional protein profiling technology and its application to human plasma proteome. J. Proteome Res. 2004, 4, 712-718.
    • (2004) J. Proteome Res , vol.4 , pp. 712-718
    • Fujii, K.1    Nakano, T.2    Kawamura, T.3    Usui, F.4
  • 16
    • 0003206867 scopus 로고    scopus 로고
    • Toward a human blood serum proteome: Analysis by multidimensional separation coupled with mass spectrometry
    • Adkins, J. N., Varnum, S. M., Auberry, K. J., Moore, R.J. et al., Toward a human blood serum proteome: Analysis by multidimensional separation coupled with mass spectrometry. Mol. Cell. Proteomics 2002, 12, 947-955.
    • (2002) Mol. Cell. Proteomics , vol.12 , pp. 947-955
    • Adkins, J.N.1    Varnum, S.M.2    Auberry, K.J.3    Moore, R.J.4
  • 17
    • 3042731730 scopus 로고    scopus 로고
    • Industrial-scale proteomics: From liters of plasma to chemically synthesized proteins
    • Rose, K., Bougueleret, L., Baussant, T., Bohm, G. et al., Industrial-scale proteomics: From liters of plasma to chemically synthesized proteins. Proteomics 2004, 7, 2125-2150.
    • (2004) Proteomics , vol.7 , pp. 2125-2150
    • Rose, K.1    Bougueleret, L.2    Baussant, T.3    Bohm, G.4
  • 18
    • 33847408371 scopus 로고    scopus 로고
    • Head-to-head comparison of serum fractionation techniques
    • Whiteaker, J. R., Zhang, H., Eng, J. K., Fang, R. et al., Head-to-head comparison of serum fractionation techniques. J. Proteome Res. 2007, 6, 828-636.
    • (2007) J. Proteome Res , vol.6 , pp. 828-636
    • Whiteaker, J.R.1    Zhang, H.2    Eng, J.K.3    Fang, R.4
  • 19
    • 0037262179 scopus 로고    scopus 로고
    • Protein fractionation in a multicompartment device using Off-Gel™ isoelectric focusing
    • Michel, P. E., Reymond, F., Arnaud, I. L., Josserand, J. et al., Protein fractionation in a multicompartment device using Off-Gel™ isoelectric focusing. Electrophoresis 2003, 24, 3-11.
    • (2003) Electrophoresis , vol.24 , pp. 3-11
    • Michel, P.E.1    Reymond, F.2    Arnaud, I.L.3    Josserand, J.4
  • 20
    • 17144362794 scopus 로고    scopus 로고
    • Two-stage Off-Gel isoelectric focusing: Protein followed by peptide fractionation and application to proteome analysis of human plasma
    • Heller, M., Michel, P. E., Morier, P., Crettaz, D. et al., Two-stage Off-Gel isoelectric focusing: Protein followed by peptide fractionation and application to proteome analysis of human plasma. Electrophoresis 2005, 26, 1174-1188.
    • (2005) Electrophoresis , vol.26 , pp. 1174-1188
    • Heller, M.1    Michel, P.E.2    Morier, P.3    Crettaz, D.4
  • 21
    • 33645465791 scopus 로고    scopus 로고
    • Proteome analysis of human plasma and amniotic fluid by Off-Gel™ isoelectric focusing followed by nano-LC-MSMS
    • Michel, P. E., Crettaz, D., Morier, P., Heller, M. et al., Proteome analysis of human plasma and amniotic fluid by Off-Gel™ isoelectric focusing followed by nano-LC-MSMS. Electrophoresis 2006, 27, 1169-1181.
    • (2006) Electrophoresis , vol.27 , pp. 1169-1181
    • Michel, P.E.1    Crettaz, D.2    Morier, P.3    Heller, M.4
  • 22
    • 0041358793 scopus 로고    scopus 로고
    • Towards high-throughput tandem mass spectrometry data identification
    • OLAV
    • Colinge, J., Masselot, A., Giron, M., Dessingy, T., Magnin, J., OLAV: Towards high-throughput tandem mass spectrometry data identification. Proteomics 2003, 3, 1454-1463.
    • (2003) Proteomics , vol.3 , pp. 1454-1463
    • Colinge, J.1    Masselot, A.2    Giron, M.3    Dessingy, T.4    Magnin, J.5
  • 23
    • 1242284994 scopus 로고    scopus 로고
    • A novel scoring scheme for high-throughput peptide mass fingerprinting
    • OLAV-PMF
    • Magnin, J., Masselot, A., Menzel, C., Colinge, J., OLAV-PMF: A novel scoring scheme for high-throughput peptide mass fingerprinting. J. Proteome Res. 2004, 3, 55-60.
    • (2004) J. Proteome Res , vol.3 , pp. 55-60
    • Magnin, J.1    Masselot, A.2    Menzel, C.3    Colinge, J.4
  • 24
    • 3042735333 scopus 로고    scopus 로고
    • High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics
    • Colinge, J., Masselot, A., Cusin, I., Mahé, E. et al., High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics. Proteomics 2004, 4, 1977-1984.
    • (2004) Proteomics , vol.4 , pp. 1977-1984
    • Colinge, J.1    Masselot, A.2    Cusin, I.3    Mahé, E.4
  • 25
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • Ishihama, Y., Oda, Y., Tabata, T., Sato, T. et al., Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell. Proteomics 2005, 9, 1265-1272.
    • (2005) Mol. Cell. Proteomics , vol.9 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4
  • 26
    • 0029670071 scopus 로고    scopus 로고
    • Purification and characterization of N-acetylmuramyl-L-alanine amidase from human plasma using monoclonal antibodies
    • Hoijer, M. A., Melief, M. J., Keck, W., Hazenberg, M. P., Purification and characterization of N-acetylmuramyl-L-alanine amidase from human plasma using monoclonal antibodies. Biochim. Biophys. Acta. 1996, 1, 57-64.
    • (1996) Biochim. Biophys. Acta , vol.1 , pp. 57-64
    • Hoijer, M.A.1    Melief, M.J.2    Keck, W.3    Hazenberg, M.P.4


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