Mitochondrial phylogeographic structure of the white-browed piculet (Sasia ochracea): Cryptic genetic differentiation and endemism in Indochina

Journal of Biogeography

Volumn 35, Issue 3, 2008, Pages 565-575

  Fuchs, Jérôme ^a,b,c   Ericson, Per G P ^d   Pasquet, Eric ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^c UNIVERSITY OF CAPE TOWN   (South Africa)

^d SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

Gene flow; Haplotype network; Phylogeography; Sasia ochracea; Southeast Asia; Systematics

Indexed keywords

BIRD; ENDEMISM; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC VARIATION; MITOCHONDRIAL DNA; MORPHOLOGY; PHYLOGEOGRAPHY; POPULATION GENETICS; TAXONOMY;

ASIA; EURASIA; ISTHMUS OF KRA; SOUTHEAST ASIA;

AVES; SASIA; SASIA OCHRACEA;

EID: 39049121275     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/j.1365-2699.2007.01811.x     Document Type: Article

References (51)

1. Akaike, H. (1973) Information theory as an extension of the maximum likelihood principle. Second International Symposium on Information Theory (ed. by B.N. Petrov F. Csaki pp. 276 281. A Kademiai Kiado, Budapest.
2. Barrowclough, G.F., Groth, J.G., Mertz, L.A. Guttierez, R.J. (2004) Phylogeographic structure, gene flow and species status in blue grouse (Dendragapus obscurus). Molecular Ecology, 13, 1911 1922.
3. Bates, J.M., Haffer, J. Grismer, E. (2004) Avian mitochondrial DNA sequence divergence across a headwater stream of the Rio Tapajós, a major Amazonian river. Journal of Ornithology, 145, 199 205.
4. Benz, B.W., Robbins, M.B. Peterson, A.T. (2006) Evolutionary history of woodpeckers and allies (Aves: Picidae): placing key taxa on the phylogenetic tree. Molecular Phylogenetics and Evolution, 40, 389 399.
5. Bowie, R.C.K., Fjeldså, J., Hackett, S.J. Crowe, T.M. (2004) Molecular evolution in space and through time: mtDNA phylogeography of the Olive Sunbird (Nectarinia olivacea/obscura) throughout continental Africa. Molecular Phylogenetics and Evolution, 33, 56 74.
6. Bowie, R.C.K., Fjeldså, J., Hackett, S.J., Bates, J.M. Crowe, T.M. (2006) Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin. Molecular Phylogenetics and Evolution, 38, 171 188.
7. Burns, K.J. Barhoum, D.N. (2006) Population-level history of the wrentit (Chamaea fasciata): implications for comparative phylogeography in the California Floristic Province. Molecular Phylogenetics and Evolution, 38, 117 129.
8. Campbell, P., Schneider, C.J., Adnan, A.M., Zubaid, A. Kunz, T.H. (2006) Comparative population structure of Cynopterus fruit bats in peninsular Malaysia and southern Thailand. Molecular Ecology, 15, 29 47.
9. Clement, M., Posada, D. Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
10. Desjardins, P. Morais, R. (1990) Sequence and gene organization of the chicken mitochondrial genome a novel gene order in higher vertebrates. Journal of Molecular Biology, 212, 599 634.
11. Excoffier, L., Smouse, P. Quattro, J. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
12. Fuchs, J., Ohlson, J.I., Ericson, P.G.P. Pasquet, E. (2006) Molecular phylogeny and biogeographic history of the piculets (Piciformes: Picumninae). Journal of Avian Biology, 37, 487 496.
13. Garcia-Moreno, J. (2004) Is there a universal mtDNA clock for birds Journal of Avian Biology, 35, 465 468.
14. Gorog, A.J., Sinaga, M.H. Engstrom, M.D. (2004) Vicariance or dispersal? Historical biogeography of three Sunda shelf murine rodents (Maxomys surifer, Leopoldamys sabanus and Maxomys whiteheadi). Biological Journal of the Linnean Society, 81, 91 109.
15. Hennache, A. Dickinson, E.C. (2000) Les types d'oiseaux rapportés du Vietnam, du Laos et du Cambodge par Jean Delacour entre 1923 et 1939. Zoosystema, 22, 601 629.
16. Ho, S.H.W. Larson, G. (2006) Molecular clocks: when times are a-changin'. Trends in Genetics, 22, 79 83.
17. Ho, S.H.W., Phillips, M.J., Cooper, A. Drummond, A.J. (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22, 1561 1568.
18. Hope, G., Kershaw, A.P., van der Kaars, S., Xiangjun, S., Liew, P.-M., Heusser, L.E., Takahara, H., McGlone, M., Miyoshi, N. Moss, P.T. (2004) History of vegetation and habitat change in the Austral-Asian region. Quaternary International, 118-119, 103 126.
19. Huelsenbeck, J.P. Rannala, B. (1997) Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science, 276, 227 232.
20. Huelsenbeck, J.P. Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
21. Iyengar, A., Babu, V.N., Hedges, S., Venkataraman, A.B., Maclean, N. Morin, P.A. (2005) Phylogeography, genetic structure, and diversity in the Dhole (Cuon alpinus). Molecular Ecology, 14, 2281 2297.
22. Kahindo, C., Bowie, R.C.K. Bates, J.M. (2007) The relevance of data on genetic diversity for the conservation of Afro-montane regions. Biological Conservation, 134, 262 270.
23. Li, S.-H., Li, J.-W., Han, L.-X., Yao, C.-T., Shi, H., Lei, F.-M. Yen, C. (2006) Species delimitation in the Hwamei Garrulax canorus. Ibis, 148, 698 706.
24. Londo, J.P., Chuang, Y.-C., Hung, K.-H., Chiang, T.-Y. Schaal, B.A. (2006) Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa. Proceedings of the National Academy of Sciences USA, 103, 9578 9583.
25. Lovette, I.J. (2005) Mitochondrial dating and mixed support for the '2% rule' in birds. The Auk, 121, 1 6.
26. Lozupone, P., Beehler, B.M. Ripley, S.D. (2004) Ornithological Gazetteer of the Indian Subcontinent. Center for Applied Biodiversity Science, Conservation International, Washington, DC.
27. Marks, B.M., Hackett, S.J. Capparella, A.P. (2002) Historical relationships among Neotropical lowland forest areas of endemism as determined by mitochondrial DNA sequence variation within the Wedge-billed Woodcreeper (Aves: Dendrocolaptidae: Glyphorynchus spirurus). Molecular Phylogenetics and Evolution, 24, 153 167.
28. Moyle, R.G., Schilthuizen, M., Rahman, M.A. Sheldon, F.H. (2005) Molecular phylogenetic analysis of the white-crowned forktail Enicurus leschenaulti in Borneo. Journal of Avian Biology, 36, 96 101.
29. Newton, I. (2003) The speciation and biogeography of birds. Academic Press, London.
30. Nielsen, R. (2002) Mdiv software. Available at http://www.binf.ku.dk/ ∼rasmus/webpage/mdiv.html.
31. Nielsen, R. Wakeley, J. (2001) Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics, 158, 885 896.
32. Nylander, J.A.A. (2004) MrModeltest2 version 2.2. Available at http://www.abc.se/∼nylander.
33. Pavlova, A., Zink, R.M., Rohwer, S., Koblik, E.A., Red'kin, Y.A., Fadeev, I.V. Nesterov, E.V. (2005) Mitochondrial DNA and plumage evolution in the white wagtail Motacilla alba. Journal of Avian Biology, 36, 322 336.
34. Pereira, S.L. Baker, A.J. (2006) A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. Molecular Biology and Evolution, 23, 1731 1740.
35. Phillimore, A.B. Owens, I.P.F. (2006) Are subspecies useful in evolutionary and conservation biology Proceedings of the Royal Society B: Biological Sciences, 273, 1049 1053.
36. Posada, D. Crandall, K.A. (2001) Intraspecific gene genealogies: tree grafting into cladograms. Trends in Ecology & Evolution, 16, 37 45.
37. Ronquist, F. Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
38. Schneider, S., Keuffer, J.-M., Roessli, D. Excoffier, L. (2000) Arlequin: a software package for population genetics. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
39. Sodhi, N.S., Koh, L.P., Brook, B.W. Ng, P.K.L. (2004) Southeast Asian biodiversity: an impending disaster. Trends in Ecology & Evolution, 19, 654 660.
40. Sodhi, N.S., Koh, L.P. Brook, B.W. (2006) Southeast Asian birds in peril. The Auk, 123, 275 277.
41. Stuart, B.L., Inger, R.F. Voris, H.K. (2006) High level of cryptic species diversity revealed by sympatric lineages of Southeast Asian forest frogs. Biology Letters, 2, 470 474.
42. Sun, X., Luo, Y., Huang, F., Tian, J. Wang, P. (2003) Deep-sea pollen from the South China Sea: Pleistocene indicators of East Asian monsoon. Marine Geology, 201, 97 118.
43. Veron, G., Patou, M.-L., Pothet, G., Simberloff, D. Jennings, A.J.P. (2007) Systematic status and biogeography of the Javan and small Indian mongooses (Herpestidae, Carnivora). Zoologica Scripta, 36, 1 10.
44. Warren, B.H., Bermingham, E., Bowie, R.C.K., Prys-Jones, R.P. Thébaud, C. (2003) Molecular phylogeography reveals island colonization history and diversification of western Indian Ocean sunbirds (Nectarinia: Nectariniidae). Molecular Phylogenetics and Evolution, 29, 67 85.
45. Winkler, H. Christie, D.A. (2002) Family Picidae (Woodpeckers). Handbook of the Birds of the World. Volume 7. Jacamars to Woodpeckers (ed. by J. Del Hoyo, A. Elliott J. Sargatal pp. 296 555. Lynx Edicions, Barcelona.
46. Winnepenninckx, B., Backeljau, T. De Wachter, R. (1993) Extraction of high molecular weight DNA for mollusks. Trends in Genetics, 9, 407.
47. Woodruff, D.S. (2003) Neogene marine transgressions, palaeogeography and biogeographic transitions on the Thai-Malay Peninsula. Journal of Biogeography, 30, 551 567.
48. Yang, Z. (2003) Paml 3.14ß: Phylogenetic analysis by Maximum Likelihood, Version 3.14. Available at ftp://abacus.gene.ucl.ac.uk/pub/paml.
49. Zink, R.M. (2004) The role of subspecies in obscuring avian biological diversity and misleading conservation policy. Proceedings of the Royal Society B: Biological Sciences, 271, 561 564.
50. Zink, R.M., Pavlova, A., Rohwer, S. Drovetski, S.V. (2006) Barn swallows before barns: population histories and intercontinental colonization. Proceedings of the Royal Society B: Biological Sciences, 273, 1245 1251.
51. Zou, F., Lim, H.C., Marks, B.D., Moyle, R.G. Sheldon, F.H. (2007) Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: a case of remarkable genetic divergence in a 'species'. Molecular Phylogenetics and Evolution, 44, 165 174.