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Volumn 3, Issue 1, 2008, Pages 10-31

Web and grid technologies in bioinformatics, computational and systems biology: A review

Author keywords

Grid computing; In silico experiments; Middleware; Semantic web; Web agents; Web services

Indexed keywords

BIOTIC; GLOBAL WARMING; GRID COMPUTING; METADATA; NETWORK SECURITY;

EID: 38949183929     PISSN: 15748936     EISSN: None     Source Type: Journal    
DOI: 10.2174/157489308783329850     Document Type: Review
Times cited : (13)

References (118)
  • 2
    • 0033546021 scopus 로고    scopus 로고
    • NIH urged to fund centres to merge computing and biology
    • Malakoff D. NIH urged to fund centres to merge computing and biology. Science 1999; 284: 1742.
    • (1999) Science , vol.284 , pp. 1742
    • Malakoff, D.1
  • 3
    • 13444259868 scopus 로고    scopus 로고
    • The Molecular Biology Database Collection: 2005 update
    • Galperin MY. The Molecular Biology Database Collection: 2005 update. Nucleic Acids Res 2005; 33: D5-24.
    • (2005) Nucleic Acids Res , vol.33
    • Galperin, M.Y.1
  • 5
    • 0034952253 scopus 로고    scopus 로고
    • DiscoveryLink: A system for integrated access to life sciences data sources
    • Haas LM, Schwarz PM, Kodali P, et al. DiscoveryLink: a system for integrated access to life sciences data sources. IBM Systems J 2001; 40: 464-88.
    • (2001) IBM Systems J , vol.40 , pp. 464-488
    • Haas, L.M.1    Schwarz, P.M.2    Kodali, P.3
  • 6
    • 38149031262 scopus 로고    scopus 로고
    • An Empirical Study of Grid Applications in Life Science: Lessons learnt from Biogrid project in Japan
    • Susumu D, Kazutoshi F, Hideo M, Haruki NShinji S. An Empirical Study of Grid Applications in Life Science: lessons learnt from Biogrid project in Japan. Int J Inf Tech 2005; 11: 16-28.
    • (2005) Int J Inf Tech , vol.11 , pp. 16-28
    • Susumu, D.1    Kazutoshi, F.2    Hideo, M.3    Haruki NShinji, S.4
  • 9
    • 0037232785 scopus 로고    scopus 로고
    • The Virtual Laboratory: Enabling molecular modelling for drug design on the World Wide Grid
    • Buyya R, Branson K, Giddy J, Abromson D. The Virtual Laboratory: enabling molecular modelling for drug design on the World Wide Grid. Concurrency Computat: Pract and Exper 2003; 15: 1-25.
    • (2003) Concurrency Computat: Pract and Exper , vol.15 , pp. 1-25
    • Buyya, R.1    Branson, K.2    Giddy, J.3    Abromson, D.4
  • 10
    • 85200523970 scopus 로고    scopus 로고
    • Stevens RD, Robinson AJ, Goble CA. myGrid: personalised bioinformatics on the information grid. Bioinformatics 2003; 19 Suppl 1: i302-04.
    • Stevens RD, Robinson AJ, Goble CA. myGrid: personalised bioinformatics on the information grid. Bioinformatics 2003; 19 Suppl 1: i302-04.
  • 11
    • 85200523980 scopus 로고    scopus 로고
    • Goble C, Wroe C, Steven R, myGrid consortium. The myGrid project: services, architecture and demonstrator, In: Proceedings of the UK e-Science All Hands Meeting, Nottingham, UK, 2003.
    • Goble C, Wroe C, Steven R, myGrid consortium. The myGrid project: services, architecture and demonstrator, In: Proceedings of the UK e-Science All Hands Meeting, Nottingham, UK, 2003.
  • 12
    • 0037935183 scopus 로고    scopus 로고
    • BioMOBY: An open source biological web services proposal
    • Wilkinson MD, Links M. BioMOBY: an open source biological web services proposal. Brief Bioinform 2002; 3: 331-41.
    • (2002) Brief Bioinform , vol.3 , pp. 331-341
    • Wilkinson, M.D.1    Links, M.2
  • 13
    • 27244434525 scopus 로고    scopus 로고
    • BioMOBY Successfully Integrates Distributed Heterogeneous Bioinformatics Web Services: The PlaNet exemplar case
    • Wilkinson M, Schoof H, Ernst R, Haase D. BioMOBY Successfully Integrates Distributed Heterogeneous Bioinformatics Web Services: the PlaNet exemplar case. Plant Physiol 2005; 138: 5-17.
    • (2005) Plant Physiol , vol.138 , pp. 5-17
    • Wilkinson, M.1    Schoof, H.2    Ernst, R.3    Haase, D.4
  • 14
    • 34547886125 scopus 로고    scopus 로고
    • BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations
    • Kerhornou A, Guigo R. BioMoby web services to support clustering of co-regulated genes based on similarity of promoter configurations. Bioinformatics 2007; 23: 1831-33.
    • (2007) Bioinformatics , vol.23 , pp. 1831-1833
    • Kerhornou, A.1    Guigo, R.2
  • 15
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice P, Longden I, Bleasby A. EMBOSS: the European molecular biology open software suite. Trends Genet 2000; 16: 276-83.
    • (2000) Trends Genet , vol.16 , pp. 276-283
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 16
    • 85200522424 scopus 로고    scopus 로고
    • A survey on grid architectures for bioinformatics
    • Martino BD, Dongarra J, Hoisie A, Yang LT, Zima H Eds, American Scientific Publishers
    • Guillermo PT, Oscar P, Emilio LZ, A survey on grid architectures for bioinformatics, In: Martino BD, Dongarra J, Hoisie A, Yang LT, Zima H Eds, Engineering The Grid: Status and Perspective. American Scientific Publishers, 2006; 109-121.
    • (2006) Engineering The Grid: Status and Perspective , pp. 109-121
    • Guillermo, P.T.1    Oscar, P.2    Emilio, L.Z.3
  • 17
    • 1642332170 scopus 로고    scopus 로고
    • A survey of life sciences applications on the grid
    • Krishnan A. A survey of life sciences applications on the grid. New Generation Computing Archive 2004; 22: 111-26.
    • (2004) New Generation Computing Archive , vol.22 , pp. 111-126
    • Krishnan, A.1
  • 21
    • 27144497798 scopus 로고    scopus 로고
    • From XML to RDF: How semantic web technologies will change the design of 'omic' standards
    • Wang X, Gorlitsky R, Almeida JS. From XML to RDF: how semantic web technologies will change the design of 'omic' standards. Nat Biotechnol 2005; 23: 1099-103.
    • (2005) Nat Biotechnol , vol.23 , pp. 1099-1103
    • Wang, X.1    Gorlitsky, R.2    Almeida, J.S.3
  • 25
    • 35048864354 scopus 로고    scopus 로고
    • Using semantic web technologies for representing e-science provenance
    • Sheila MA, Dimitris P, Frank H Eds, The Semantic Web, ISWC 2004. Springer-Verlag
    • Zhao J, Wroe C, Goble C, et al. Using semantic web technologies for representing e-science provenance, In: Sheila MA, Dimitris P, Frank H Eds, The Semantic Web - ISWC 2004. Springer-Verlag, 2004; LNCS 3298: 92-106.
    • (2004) LNCS , vol.3298 , pp. 92-106
    • Zhao, J.1    Wroe, C.2    Goble, C.3
  • 27
    • 0034887203 scopus 로고    scopus 로고
    • Creating the Gene Ontology Resource: Design and implementation
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. Creating the Gene Ontology Resource: design and implementation. Genome Res 2001; 11: 1425-33.
    • (2001) Genome Res , vol.11 , pp. 1425-1433
  • 28
    • 33644875286 scopus 로고    scopus 로고
    • The Gene Ontology (GO) project in 2006
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. The Gene Ontology (GO) project in 2006. Nucleic Acids Res 2006; 34: D322-28.
    • (2006) Nucleic Acids Res , vol.34
  • 30
    • 85200522768 scopus 로고    scopus 로고
    • Ruttenherg A, Rees J, Zucker J, What BioPAX communicates and how to extend OWL to help it, In: Proceedings of the Workshop series on OWL: Experiences and Directions, Manchester, UK, 2006.
    • Ruttenherg A, Rees J, Zucker J, What BioPAX communicates and how to extend OWL to help it, In: Proceedings of the Workshop series on OWL: Experiences and Directions, Manchester, UK, 2006.
  • 31
    • 33645277092 scopus 로고    scopus 로고
    • The MGED Ontology: A resource for semantics-based description of microarray experiments
    • Whetzel PL, Parkinson H, Causton HC, et al. The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 2000; 22: 866-73.
    • (2000) Bioinformatics , vol.22 , pp. 866-873
    • Whetzel, P.L.1    Parkinson, H.2    Causton, H.C.3
  • 32
    • 27944436592 scopus 로고    scopus 로고
    • MiMiR: A comprehensive solution for storage, annotation and exchange of microarray data
    • Navarange M, Game L, Fowler D et al. MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data. BMC Bioinformatics 2005; 6: 268-78.
    • (2005) BMC Bioinformatics , vol.6 , pp. 268-278
    • Navarange, M.1    Game, L.2    Fowler, D.3
  • 33
    • 18344396568 scopus 로고    scopus 로고
    • Minimum Information About a Microarray Experiment (MIAME) - toward standards for microarray data
    • Brazma A, Hingamp P, Quackenbush J, et al. Minimum Information About a Microarray Experiment (MIAME) - toward standards for microarray data. Nat Genet 2001; 29: 365-71.
    • (2001) Nat Genet , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3
  • 35
    • 34447539654 scopus 로고    scopus 로고
    • Text Mining: Powering the database revolution
    • Hahn U, Wermter J, Blasczyk R, Horn PA. Text Mining: powering the database revolution. Nature 2007; 448: 130.
    • (2007) Nature , vol.448 , pp. 130
    • Hahn, U.1    Wermter, J.2    Blasczyk, R.3    Horn, P.A.4
  • 36
    • 17644406345 scopus 로고    scopus 로고
    • Integrating biological research through web services
    • Gao HT, Hayes JH, Cai H. Integrating biological research through web services. Computer 2005; 38: 26-31.
    • (2005) Computer , vol.38 , pp. 26-31
    • Gao, H.T.1    Hayes, J.H.2    Cai, H.3
  • 37
    • 33750042586 scopus 로고    scopus 로고
    • Globus Toolkit Version 4: Software for service-oriented systems
    • Foster I. Globus Toolkit Version 4: Software for service-oriented systems. J Comput Sci Tech 2006; 21: 513-20.
    • (2006) J Comput Sci Tech , vol.21 , pp. 513-520
    • Foster, I.1
  • 38
    • 85200523680 scopus 로고    scopus 로고
    • EGEE-II overview paper, Accessed: August 2007
    • EGEE-II overview paper, http://www.dcc.ac.uk/events/policy-2006/ EGEE-II%20overview%20paper.pdf [Accessed: August 2007].
  • 39
    • 85200522409 scopus 로고    scopus 로고
    • gLite3 user guide, https://edms.cern.ch/file/722398/1.1/ gLite-3-UserGuide.html [Accessed: August 2007].
    • gLite3 user guide, https://edms.cern.ch/file/722398/1.1/ gLite-3-UserGuide.html [Accessed: August 2007].
  • 41
    • 85200522045 scopus 로고    scopus 로고
    • Semantic life science middleware with web service resource framework
    • Nottingham, UK
    • Wietrzyk B, Radenkovic M, Semantic life science middleware with web service resource framework, In: Proceedings of the 4th All Hands Meeting, Nottingham, UK, 2005.
    • (2005) Proceedings of the 4th All Hands Meeting
    • Wietrzyk, B.1    Radenkovic, M.2
  • 42
    • 33646676092 scopus 로고    scopus 로고
    • Life science grid middleware in a more dynamic environment
    • Meersman R, Tari Z, Herrero P, et al. Eds, Proceedings of OTS Workshops. Springer-Verlag
    • Radenkovic M, Wietrzyk B, Life science grid middleware in a more dynamic environment, In: Meersman R, Tari Z, Herrero P, et al. Eds, Proceedings of OTS Workshops. Springer-Verlag, 2005; LNCS 3762: 264-73.
    • (2005) LNCS , vol.3762 , pp. 264-273
    • Radenkovic, M.1    Wietrzyk, B.2
  • 43
    • 21544461263 scopus 로고    scopus 로고
    • PAX of mind for pathway researchers
    • Luciano JS. PAX of mind for pathway researchers. Drug Discov Today 2005; 10: 937-42.
    • (2005) Drug Discov Today , vol.10 , pp. 937-942
    • Luciano, J.S.1
  • 46
    • 0035098865 scopus 로고    scopus 로고
    • On the importance of standardisation in life sciences
    • Brazma A. On the importance of standardisation in life sciences. Bioinformatics 2001; 17: 113-4.
    • (2001) Bioinformatics , vol.17 , pp. 113-114
    • Brazma, A.1
  • 47
    • 0034117360 scopus 로고    scopus 로고
    • TAMBIS: Transparent access to multiple bioinformatics information sources
    • Stevens R, Baker P, Bechhofer S, et al. TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics 2000; 16: 184-89.
    • (2000) Bioinformatics , vol.16 , pp. 184-189
    • Stevens, R.1    Baker, P.2    Bechhofer, S.3
  • 48
    • 85200525411 scopus 로고    scopus 로고
    • Komatsoulis GA, Warzel DB, Hartel FW, et al. caCORE version 3: implementation of a model driven, service-oriented architecture for semantic interoperability. J Biomed Inform 2007 (To appear).
    • Komatsoulis GA, Warzel DB, Hartel FW, et al. caCORE version 3: implementation of a model driven, service-oriented architecture for semantic interoperability. J Biomed Inform 2007 (To appear).
  • 50
    • 33646743767 scopus 로고    scopus 로고
    • The Gaggle: An open-source software system for integrating bioinformatics software and data sources
    • Shannon PT, Reiss DJ, Bonneau R, Baliga NS. The Gaggle: an open-source software system for integrating bioinformatics software and data sources. BMC Bioinformatics 2006; 7: 176-89.
    • (2006) BMC Bioinformatics , vol.7 , pp. 176-189
    • Shannon, P.T.1    Reiss, D.J.2    Bonneau, R.3    Baliga, N.S.4
  • 52
    • 33947623106 scopus 로고    scopus 로고
    • SBMLeditor: Effective creation of models in the Systems Biology Markup Language (SBML)
    • Rodriguez N, Donizelli M, Novere LN. SBMLeditor: effective creation of models in the Systems Biology Markup Language (SBML). BMC Bioinformatics 2007; 8: 79-87.
    • (2007) BMC Bioinformatics , vol.8 , pp. 79-87
    • Rodriguez, N.1    Donizelli, M.2    Novere, L.N.3
  • 54
    • 1542290452 scopus 로고    scopus 로고
    • Ontologies in Biology: Design, applications and future challenges
    • Bard JB, Rhee SY. Ontologies in Biology: design, applications and future challenges. Nat Rev Genet 2004; 5: 213-22.
    • (2004) Nat Rev Genet , vol.5 , pp. 213-222
    • Bard, J.B.1    Rhee, S.Y.2
  • 55
    • 18644378331 scopus 로고    scopus 로고
    • The Generic Genome Browser: A building block for a model organism system database
    • Stein LD, Mungall C, Shu S, et al. The Generic Genome Browser: a building block for a model organism system database. Genome Res 2002; 12: 1599-610.
    • (2002) Genome Res , vol.12 , pp. 1599-1610
    • Stein, L.D.1    Mungall, C.2    Shu, S.3
  • 56
    • 0742323374 scopus 로고    scopus 로고
    • The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data
    • Hermjakob H, Montecchi-Palazzi L, Bader G, et al. The HUPO PSI's molecular interaction format - a community standard for the representation of protein interaction data. Nat Biotechnol 2004; 22: 177-83.
    • (2004) Nat Biotechnol , vol.22 , pp. 177-183
    • Hermjakob, H.1    Montecchi-Palazzi, L.2    Bader, G.3
  • 57
    • 33846542380 scopus 로고    scopus 로고
    • Agents in bioinformatics, computational and systems biology
    • Merelli E, Armano G, Cannata N, et al. Agents in bioinformatics, computational and systems biology. Brief Bioinform 2007; 8: 45-59.
    • (2007) Brief Bioinform , vol.8 , pp. 45-59
    • Merelli, E.1    Armano, G.2    Cannata, N.3
  • 59
    • 0242291751 scopus 로고    scopus 로고
    • Agent interaction for bioinformatics data management
    • Bryson K, Luck M, Joy M, Jones D. Agent interaction for bioinformatics data management. Appl Artif Intell 2001; 15: 917-47.
    • (2001) Appl Artif Intell , vol.15 , pp. 917-947
    • Bryson, K.1    Luck, M.2    Joy, M.3    Jones, D.4
  • 61
    • 18244404282 scopus 로고    scopus 로고
    • Service-oriented science
    • Foster I. Service-oriented science. Science 2005; 308: 814-17.
    • (2005) Science , vol.308 , pp. 814-817
    • Foster, I.1
  • 64
    • 0019797407 scopus 로고
    • Evolutionary Trees from DNA Sequences: A maximum likelihood approach
    • Felsenstein J. Evolutionary Trees from DNA Sequences: a maximum likelihood approach. J Mol Evol 1981; 17: 368-76.
    • (1981) J Mol Evol , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 65
    • 24944573180 scopus 로고    scopus 로고
    • GriddLeS enhancements and building virtual applications for the GRID with legacy components
    • Proceedings of the European Grid Conference EGC, Springer-Verlag
    • Kommineni J, Abramson D, GriddLeS enhancements and building virtual applications for the GRID with legacy components, In: Proceedings of the European Grid Conference (EGC 2005). Springer-Verlag, 2005; LNCS 3470: 961-71.
    • (2005) LNCS , vol.3470 , pp. 961-971
    • Kommineni, J.1    Abramson, D.2
  • 66
    • 0032592485 scopus 로고    scopus 로고
    • Design and Implementations of Ninf. towards a global computing infrastructure
    • Nakada H, Sato M, Sekiguchi S. Design and Implementations of Ninf. towards a global computing infrastructure. Fut Gene Comput Syst 1999; 15: 649-58.
    • (1999) Fut Gene Comput Syst , vol.15 , pp. 649-658
    • Nakada, H.1    Sato, M.2    Sekiguchi, S.3
  • 72
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22: 4673-80.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 73
    • 34247875963 scopus 로고    scopus 로고
    • The Open Grid Computing Environments Collaboration: Portlets and services for science gateways
    • Alameda J, Christie M, Fox G, et al. The Open Grid Computing Environments Collaboration: portlets and services for science gateways. Concurrency and Computar Pract and Exper 2007; 19: 921-42.
    • (2007) Concurrency and Computar Pract and Exper , vol.19 , pp. 921-942
    • Alameda, J.1    Christie, M.2    Fox, G.3
  • 74
    • 0035109709 scopus 로고    scopus 로고
    • A Web interface generator for molecular biology programs in Unix
    • Letondal C. A Web interface generator for molecular biology programs in Unix. Bioinformatics 2001; 17: 73-82.
    • (2001) Bioinformatics , vol.17 , pp. 73-82
    • Letondal, C.1
  • 75
    • 30344472734 scopus 로고    scopus 로고
    • GNARE: Automated system for high-throughput genorne analysis with grid computational backend
    • Sulakhe D, Rodriguez A, D'Souza M, et al. GNARE: automated system for high-throughput genorne analysis with grid computational backend. J Clin Monit Comput 2005; 19: 361-70.
    • (2005) J Clin Monit Comput , vol.19 , pp. 361-370
    • Sulakhe, D.1    Rodriguez, A.2    D'Souza, M.3
  • 77
    • 20144389891 scopus 로고    scopus 로고
    • Grid Cellware: The first grid-enabled tool for modelling and simulating cellular processes
    • Dhar PK, Meng TC, Somani S, et al. Grid Cellware: the first grid-enabled tool for modelling and simulating cellular processes. Bioinformatics 2005; 21: 1284-87.
    • (2005) Bioinformatics , vol.21 , pp. 1284-1287
    • Dhar, P.K.1    Meng, T.C.2    Somani, S.3
  • 78
    • 85200523525 scopus 로고    scopus 로고
    • Lu E, Xu Z, Sun J. An extendable grid simulation environment based on GridSim, In: Proceedings of the 2nd International Workshop on Grid and Cooperative Computing (GCC 2003). Springer-Verlag, 2004; 3032: 205-08.
    • Lu E, Xu Z, Sun J. An extendable grid simulation environment based on GridSim, In: Proceedings of the 2nd International Workshop on Grid and Cooperative Computing (GCC 2003). Springer-Verlag, 2004; 3032: 205-08.
  • 79
    • 0036871428 scopus 로고    scopus 로고
    • GridSim: A toolkit for the modelling and simulation of distributed resource management and scheduling for Grid computing
    • Buyya R, Murshed M. GridSim: a toolkit for the modelling and simulation of distributed resource management and scheduling for Grid computing. Concurrency and Computat. Pract and Exper 2002; 14: 1175-1220.
    • (2002) Concurrency and Computat. Pract and Exper , vol.14 , pp. 1175-1220
    • Buyya, R.1    Murshed, M.2
  • 80
    • 85200522020 scopus 로고    scopus 로고
    • Lamehamedi H, Shentu Z, Szymanski B, Deelman E, Simulation of Dynamic Data Replication Strategies in Data Grids, In: Proceedings of the 17th International Symposium on Parallel and Distributed Processing (IPDPS 2003). IEEE Comp Soc DC 2003; 100-02.
    • Lamehamedi H, Shentu Z, Szymanski B, Deelman E, Simulation of Dynamic Data Replication Strategies in Data Grids, In: Proceedings of the 17th International Symposium on Parallel and Distributed Processing (IPDPS 2003). IEEE Comp Soc DC 2003; 100-02.
  • 81
    • 15944389488 scopus 로고    scopus 로고
    • GLAD: A system for developing and deploying large-scale bioinformatics grid
    • Teo YM, Wang X, Ng YK. GLAD: a system for developing and deploying large-scale bioinformatics grid. Bioinformatics 2005; 21: 794-802.
    • (2005) Bioinformatics , vol.21 , pp. 794-802
    • Teo, Y.M.1    Wang, X.2    Ng, Y.K.3
  • 82
    • 0035351171 scopus 로고    scopus 로고
    • On the parallelization of bioinformatics applications
    • Trelles O. On the parallelization of bioinformatics applications. Brief Bioinform 2001; 2: 181-94.
    • (2001) Brief Bioinform , vol.2 , pp. 181-194
    • Trelles, O.1
  • 84
    • 10444280524 scopus 로고    scopus 로고
    • Proteus: A grid based problem solving environment for bioinformatics- architecture and experiments
    • Cannataro M, Comito C, Schiavo FL, Veltri P. Proteus: a grid based problem solving environment for bioinformatics- architecture and experiments. IEEE Computat Intel Bull 2004; 3: 07-18.
    • (2004) IEEE Computat Intel Bull , vol.3 , pp. 07-18
    • Cannataro, M.1    Comito, C.2    Schiavo, F.L.3    Veltri, P.4
  • 85
    • 35048833009 scopus 로고    scopus 로고
    • A model of problem solving environment for integrated bioinformatics solution on grid by using Condor
    • Proceedings of the 3rd International Conference on Grid and Cooperative Computing GCC, Springer-Verlag
    • Choong HS, Byoung JK, Gwan SY, A model of problem solving environment for integrated bioinformatics solution on grid by using Condor, In: Proceedings of the 3rd International Conference on Grid and Cooperative Computing (GCC 2004). Springer-Verlag, 2004; LNCS 3251: 935-38.
    • (2004) LNCS , vol.3251 , pp. 935-938
    • Choong, H.S.1    Byoung, J.K.2    Gwan, S.Y.3
  • 86
    • 25444520762 scopus 로고    scopus 로고
    • Wildfire: Distributed, Grid-enabled workflow construction and execution
    • Tang F, Chua CL, Ho LY, et al. Wildfire: distributed, Grid-enabled workflow construction and execution. BMC Bioinformatics 2005; 6: 69-78.
    • (2005) BMC Bioinformatics , vol.6 , pp. 69-78
    • Tang, F.1    Chua, C.L.2    Ho, L.Y.3
  • 87
    • 33747833111 scopus 로고    scopus 로고
    • Taverna: A tool for building and running workflows of services
    • Hull D, Wolstencroft K, Stevens R, et al. Taverna: a tool for building and running workflows of services. Nucleic Acids Res 2006; 34: W729-32.
    • (2006) Nucleic Acids Res , vol.34
    • Hull, D.1    Wolstencroft, K.2    Stevens, R.3
  • 88
    • 0035551798 scopus 로고    scopus 로고
    • The GrADS Project: Software support for high-level grid application development
    • Berman F, Chien A, Cooper K. The GrADS Project: software support for high-level grid application development. Int J High Perform Computing App 2001; 15: 327-44.
    • (2001) Int J High Perform Computing App , vol.15 , pp. 327-344
    • Berman, F.1    Chien, A.2    Cooper, K.3
  • 89
    • 0345584934 scopus 로고    scopus 로고
    • The cactus framework and toolkit: Design and applications
    • Proceedings of the 5th International Conference on High Performance Computing for Computational Science, Springer-Verlag
    • Goodale T, Allen G, Lanfermann G, et al. The cactus framework and toolkit: design and applications, In: Proceedings of the 5th International Conference on High Performance Computing for Computational Science, Springer-Verlag, 2003; LNCS 2565: 15-36.
    • (2003) LNCS , vol.2565 , pp. 15-36
    • Goodale, T.1    Allen, G.2    Lanfermann, G.3
  • 91
    • 18644368714 scopus 로고    scopus 로고
    • The bioper1 toolkit: Perl modules for the life sciences
    • Stajich JE, Block D, Boulez K, et al. The bioper1 toolkit: Perl modules for the life sciences. Genome Res 2002; 12:1611-18.
    • (2002) Genome Res , vol.12 , pp. 1611-1618
    • Stajich, J.E.1    Block, D.2    Boulez, K.3
  • 92
    • 0036788946 scopus 로고    scopus 로고
    • A computational economy for grid computing and its implementation in the Nimrod-G resource broker
    • Abramson D, Buyya R, Giddy J. A computational economy for grid computing and its implementation in the Nimrod-G resource broker. Fut Generation Computer Syst 2002; 18: 1061-74.
    • (2002) Fut Generation Computer Syst , vol.18 , pp. 1061-1074
    • Abramson, D.1    Buyya, R.2    Giddy, J.3
  • 94
    • 18844401666 scopus 로고    scopus 로고
    • Biological sequence alignment on the computational grid using the GrADS framework
    • Yarkhan A, Dongarra JJ. Biological sequence alignment on the computational grid using the GrADS framework. Fut Generation Comput Syst 2005; 21: 980-86.
    • (2005) Fut Generation Comput Syst , vol.21 , pp. 980-986
    • Yarkhan, A.1    Dongarra, J.J.2
  • 97
    • 85071639310 scopus 로고    scopus 로고
    • Parrot: An application environment for data intensive computing
    • Thain D, Livny M. Parrot: an application environment for data intensive computing. Scalable Computing: Pract and Exper 2005; 6: 9-18.
    • (2005) Scalable Computing: Pract and Exper , vol.6 , pp. 9-18
    • Thain, D.1    Livny, M.2
  • 98
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A, Apweiler R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 2000; 28: 45-8.
    • (2000) Nucleic Acids Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 99
    • 0019887799 scopus 로고
    • Identification of Common Molecular Subsequences
    • Smith TF, Waterman MS. Identification of Common Molecular Subsequences. J Mol Biol 1981; 147: 195-97.
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 100
    • 0025950944 scopus 로고
    • Searching Protein Sequence Libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • Pearson WR. Searching Protein Sequence Libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genome 1991; 11: 635-50.
    • (1991) Genome , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 101
    • 84946832720 scopus 로고
    • Architecture for a grid operating system
    • Buyya R, Baker M, Proceedings of the 1st IEEE/ACM International Workshop on Grid Computing, Springer Verlag
    • Krauter K, Maheswaran M, Architecture for a grid operating system, In: Buyya R, Baker M, Proceedings of the 1st IEEE/ACM International Workshop on Grid Computing, Springer Verlag, 2000; LNCS 1971: 65-76.
    • (1971) LNCS , pp. 65-76
    • Krauter, K.1    Maheswaran, M.2
  • 102
    • 35248832575 scopus 로고    scopus 로고
    • GridOS: Operating system services for grid architectures
    • Proceedings of the High Performance Computing HiPC, Springer-Verlag
    • Padala P, Wilson JN, GridOS: operating system services for grid architectures, In: Proceedings of the High Performance Computing (HiPC 2003). Springer-Verlag, 2003; LNCS 2913: 353-62.
    • (2003) LNCS , vol.2913 , pp. 353-362
    • Padala, P.1    Wilson, J.N.2
  • 103
    • 35248883465 scopus 로고    scopus 로고
    • Performance analysis for real-time grid systems on COTS operating systems
    • Proceedings of the International Conference on Computational Science ICCS, Springer-Verlag
    • Huh EN, Mun Y, Performance analysis for real-time grid systems on COTS operating systems, In: Proceedings of the International Conference on Computational Science (ICCS 2003). Springer-Verlag, 2003; LNCS 2660: 482-90.
    • (2003) LNCS , vol.2660 , pp. 482-490
    • Huh, E.N.1    Mun, Y.2
  • 105
    • 20744459746 scopus 로고    scopus 로고
    • Legion: Lessons learned building a grid operating system In
    • Grimshaw AS, Natrajan A, Legion: Lessons learned building a grid operating system In: Proceedings of the IEEE, 2005; 93: 589-603.
    • (2005) Proceedings of the IEEE , vol.93 , pp. 589-603
    • Grimshaw, A.S.1    Natrajan, A.2
  • 107
    • 34249853867 scopus 로고    scopus 로고
    • ABCGrid: Application for bioinformatics computing grid
    • Sun Y, Zhao S, Yu H, Gao G, Luo J. ABCGrid: application for bioinformatics computing grid. Bioinformatics 2007; 23: 1175-77.
    • (2007) Bioinformatics , vol.23 , pp. 1175-1177
    • Sun, Y.1    Zhao, S.2    Yu, H.3    Gao, G.4    Luo, J.5
  • 108
    • 24944504551 scopus 로고    scopus 로고
    • UNICORE as Uniform Grid Environment for Life Seiences
    • Proceedings of the European Grid Conference EGC, Springer Verlag
    • Benedyczak K, Wronski M, Nowinski A et al, UNICORE as Uniform Grid Environment for Life Seiences, In: Proceedings of the European Grid Conference (EGC 2005). Springer Verlag, 2005; LNCS 3470: 364-73.
    • (2005) LNCS , vol.3470 , pp. 364-373
    • Benedyczak, K.1    Wronski, M.2    Nowinski, A.3
  • 109
    • 35048836686 scopus 로고    scopus 로고
    • On design of cluster and grid computing environment toolkit for bioinformatics applications
    • Proceedings of 6th International Workshop on Distributed Computing IWDC, Springer-Verlag
    • Yang CT, Kuo YL, Li KC, Gaudiot JL, On design of cluster and grid computing environment toolkit for bioinformatics applications, In: Proceedings of 6th International Workshop on Distributed Computing (IWDC 2004). Springer-Verlag, 2004; LNCS 3326: 82-87.
    • (2004) LNCS , vol.3326 , pp. 82-87
    • Yang, C.T.1    Kuo, Y.L.2    Li, K.C.3    Gaudiot, J.L.4
  • 114
    • 38949152518 scopus 로고    scopus 로고
    • The Organic Grid: Self-organizing computational biology on desktop grids
    • Zomaya AY Eds, Enabling Technologies and Case Studies, John Wiley & Sons
    • Chakravarti AJ, Baumgartner G, Lauria M, The Organic Grid: self-organizing computational biology on desktop grids, In: Zomaya AY Eds, Parallel Computing for Bioinformatics and Computational Biology: Models, Enabling Technologies and Case Studies, John Wiley & Sons, 2005; 671-703.
    • (2005) Parallel Computing for Bioinformatics and Computational Biology: Models , pp. 671-703
    • Chakravarti, A.J.1    Baumgartner, G.2    Lauria, M.3
  • 115
    • 85200522631 scopus 로고    scopus 로고
    • A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of post-genomic clinical trials on cancer
    • to appear
    • Desmedt C, Nabrzyski J, Tsiknakis M. A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of post-genomic clinical trials on cancer. IEEE Transact Inform Tech Biomed 2007; to appear.
    • (2007) IEEE Transact Inform Tech Biomed
    • Desmedt, C.1    Nabrzyski, J.2    Tsiknakis, M.3
  • 118
    • 28744434036 scopus 로고    scopus 로고
    • Neuroscience Instrumentation and Distributed Analysis of Brain Activiiy Data: A case for eScience on global grids
    • Buyya R, Date S, Mizuno-Matsumoto Y, Venugopal S, Abramson D. Neuroscience Instrumentation and Distributed Analysis of Brain Activiiy Data: a case for eScience on global grids. Concurrency, Computat: Pract and Exper 2005; 17(15): 1783-98.
    • (2005) Concurrency, Computat: Pract and Exper , vol.17 , Issue.15 , pp. 1783-1798
    • Buyya, R.1    Date, S.2    Mizuno-Matsumoto, Y.3    Venugopal, S.4    Abramson, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.