High throughput Web services for life sciences

International Conference on Information Technology: Coding and Computing, ITCC

Volumn 1, Issue , 2005, Pages 329-334

  Altunay, M ^a   Colonnese, D ^b   Warade, C ^b  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

^b IBM   (United States)

Author keywords

Bioinformatics; BioPerl; High throughput; NC BioGrid; Web services

Indexed keywords

COMPUTATION THEORY; COMPUTER SUPPORTED COOPERATIVE WORK; DIGITAL LIBRARIES; INFORMATION TECHNOLOGY; INTEGRATION; NATURAL SCIENCES COMPUTING; PROJECT MANAGEMENT;

BIOINFORMATICS; BIOPERL; HIGH THROUGHPUT; NC BIOGRID; WEB SERVICES;

WORLD WIDE WEB;

EID: 24744460930     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/itcc.2005.165     Document Type: Conference Paper

References (28)

1. A. Chervenak, and E. Deelman, et al., "Giggle: A Framework for Constructing Scalable Replica Location Services", Proceedings of Supercomputing 2002 (SC2002), Baltimore, MD, 2002.
2. BioPerl 1.2 Module Documentation, http://doc.bioperl.org/releases/ bioperl-1.2. March 14, 2002.
3. I. Foster, C. Kesselman, J. Nick, and S. Tuecke, "The Physiology of the Grid: An Open Grid Services Architecture for Distributed Systems Integration", Open Grid Service Infrastructure WG, Global Grid Forum, June 22, 2002.
4. I. Foster, and C. Kesselman, "Globus: A Toolkit-Based Grid Architecture", I. Foster and C Kesselman eds The Grid: Blueprint for a New Computing Infrastructure, Morgan Kaufman, 1999, pp. 259-278.
5. Globus Toolkit http://www-unix.globus.org/toolkit/.
6. MyProxy Online Credential Repository http://grid.ncsa.uiuc.edu/myproxy/.
7. I. Foster, C. Kesselman, G. Tsudik, and S. Tuecke, "A Security Architecture for Computational Grids", In Proceedings of the 5th ACM Conference on Computer and Communications Security, November 1998, pp. 83-92.
8. S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, "Basic Local Alignment Search Tool", Journal of Molecular Biology, 1990, 215: 403-410.
9. R. D. Stevens, A. J. Robinson, and C. A. Goble, "myGrid: personalized bioinformatics on the information grid", Proceedings of 11th International Conference on Intelligent Systems in Molecular Biology, Brisbane, Australia, published Bioinformatics, Vol. 19 Suppl. 1 2003, i302-i304, 29th June-3rd July 2003. http://www.mvgrid.org.uk/
10. A. Nowinski, J. Wypychowski, K. Benedyczak, M. Wroski, J. Pytliski, J. Skorwider, R. Metkowski, and P. Bala, "BioGRID-An European grid testbed for molecular biology", In Poster Session of 2nd European Across Grids Conference, Nicosia, Cyprus, Jan. 28-30, 2004.
11. UNICORE. Pallas. Germany http://www.unicore.org/.
12. J. Frey, T. Tannenbaum, I. Foster, M. Livny, and S. Tuecke, "Condor-G:A Computation Management Agent for Multi-Institutional Grids", Cluster Computing, 2002, vol.5, pp.237-246.
13. T.T. Wee, M.D. Silva, L.K. Siong, O.G. Sin, R. Buyya, and R. Godhia, "Asia Pacific BioGRID Initiative", http://www.apbionet.org/grid/docs/, Presentation Slides at APGrid Core Meeting, Phuket. 2002. http://www.apbionet. org/apbiogrid/
14. K. Czajkowski, I. Foster, N. Karonis, C. Kesselman, S. Martin, W. Smith, and S. Tuecke, "A Resource Management Architecture for Metacomputing Systems", Proc. IPPS/SPDP '98 Workshop on Job Scheduling Strategies for Parallel Processing, 1998, pp. 62-82.
15. E. Deelman, J. Blythe, Y. Gil, C. Kesselman, G. Mehta, K. Vahi, K. Blackburn, A. Lazzarini, A. Arbee, R. Cavanaugh, and S. Koranda, "Mapping abstract complex workflows onto Grid environments", Journal of Grid Computing, 2003.
16. M. Altunay et. al, "Web Services for Bioinformatics", developerWorks, IBM, May 2004, http://www-106.ibm.com/developerworks/ webservices/library/ws-bioinfo.html.
17. I. Foster, and C. Kesselman, "Globus: A Metacomputing Infrastructure Toolkit", International Journal of Supercomputer Applications, 1997, 11 (2): 115-128.
18. M. Cannataro, C. Comito, A. Guzzo, and P. Veltri, "Integrating Ontology and Workflow in Proteus, a Grid-Based Problem Solving Environment for Bioinformatics", In Proceeding of the International Conference on Information Technology: Coding and Computing, 2004. (ITCC'04).
19. R. Housley, W. Polk, W. Ford, and D. Solo, "Internet X.509 Public Key Infrastructure Certificate and Certificate Revocation List (CRL) Profile" RFC 3280, IETF, 2002.
20. NCBI http://www.ncbi.nlm.nih.gov/.
21. S. Fitzgerald, I. Foster, C. Kesselman, G. von Laszewski, W. Smith, and S. Tuecke, "A directory service for configuring high-performance distributed computations", In Proc. 6th IEEE Symp. On High Performance Distributed Computing, 1997, pp. 365-375.
22. NC BioGrid http://www.ncbiogrid.org/.
23. J. Novotny, S. Tuecke, and V. Welch, "An Online Credential Repository for the Grid: MyProxy", Proceedings of the Tenth International Symposium on High Performance Distributed Computing (HPDC-10), August 2001.
24. OpenLDAP http ://www. openldap.org.
25. Apache http://www.apache.org/. Apache Axis http://xml.apache.org/axis
26. th International Symposium on High Performance Distributed Computing (HPDC-12), 2003.
27. EUROGRID BioGRID http://biogrid.icm.edu.pl/
28. Avaki http://www.avaki.com