Implementation and evaluation of a Java based computational grid for bioinformatics applications

Proceedings - International Conference on Advanced Information Networking and Applications, AINA

Volumn 1, Issue , 2005, Pages 298-303

  Yang, Chao Tung ^a   Hsiung, Yi Chun ^a   Kan, Heng Chuan ^b  

^a TUNGHAI UNIVERSITY   (Taiwan)

^b NATIONAL CENTER FOR HIGH PERFORMANCE COMPUTING   (Taiwan)

Author keywords

BioGrid; FASTA; Grid Computing; Java CoG; mpiBLAST

Indexed keywords

COMPUTER NETWORKS; DISTRIBUTED COMPUTER SYSTEMS; DISTRIBUTED DATABASE SYSTEMS; JAVA PROGRAMMING LANGUAGE; MEDICAL COMPUTING; PROTEINS; SECURITY OF DATA; SOFTWARE ENGINEERING;

BIOGRID; BIOINFORMATICS; FASTA; GRID COMPUTING; JAVA COG; MPIBLAST;

BIOMEDICAL ENGINEERING;

EID: 33744473362     PISSN: 1550445X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/AINA.2005.209     Document Type: Conference Paper

References (20)

1. M. Karo, C. Dwan, J. Freeman, J. Weissman, M. Livny, E. Retzel, "Applying Grid Technologies to Bioinformatics", Proceedings of HPDC-10'01, 2001. pp. 0441.
2. Foster, C. K., eds., The Grid: Blueprint for a New Computing Infrastructure, Morgan Kaufmann, 1st edition, 1999.
3. I. Foster, "The Grid: A New Infrastructure for 21st Century Science", Physics Today, Vol. 55, No. 2, 2002, pp. 42-47.
4. BioGRlD - An European grid for molecular biology, IEEE International Symposium on High Performance Distributed Computing, Proceedings of HPDC-11, 20002, pp. 412.
5. http://www-unix.globus.org/cog/, Java Cog Kit.
6. ftp://ftp.virginia.edu/pub/fasta/, The FASTA site.
7. http://mpiblast.lanl.gov/index.html, mpiBLAST main page.
8. http://www.globus.org/, The Globus Project.
9. PARACEL BLAST-Accelerated BLAST software optimized for Linux clusters.
10. K. Hokamp, D. C. Shields, K. H. Wolfe, and D. R. Caffrey, "Wrapping up BLAST and other applications for use on Unix clusters", Bioinformatics, Vol. 19, No. 3, 2003, pp. 441-442.
11. http://www.ncbi.nlm.nih.gov/, NCBI Home Page.
12. http://www.apbionet.org/apbiogrid/, Asia Pacific BioGrid.
13. On the Use of Agents in a Bioinformatics Grid, University of Southampton, University of Manchester, University of Nottingham, University of Newcastle, University of Sheffield and EMBL Outstation, Third IEEE/ACM CCGRID'2003 Workshop on Agent Based Cluster and Grid Computing, 2003, pp. 653-661.
14. http://www.mygrid.org.uk, The UK MyGrid project site.
15. http://www.ncbiogrid.org, North Carolina Bioinformatics Grid (BioGrid) web site.
16. http://www.ncgbc.org, North Carolina Genomics, and Bioinformatics Consortium web site.
17. http://www.biogrid.jp/, Osaka University BioGrid
18. http://iubio.bio.indiana.edu/, Indiana University BioGrid
19. http://genomicsgrid.org/, Minnesota University BioGrid project.
20. http://www.bic.nus.edu.sg/biogrid/, BioGRID in the National University of Singapore