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Volumn 146, Issue 2, 2008, Pages 377-386

AffyTrees: Facilitating comparative analysis of Affymetrix plant microarray chips

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EID: 38949173315     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.107.109603     Document Type: Article
Times cited : (10)

References (17)
  • 1
    • 33747892409 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and inparalogs shared by multiple proteomes
    • Alexeyenko A, Tamas I, Liu G, Sonnhammer EL (2006) Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Bioinformatics 22: e9-e15
    • (2006) Bioinformatics , vol.22
    • Alexeyenko, A.1    Tamas, I.2    Liu, G.3    Sonnhammer, E.L.4
  • 3
    • 33645106540 scopus 로고    scopus 로고
    • OrthologID: Automation of genome-scale ortholog identification within a parsimony framework
    • Chiu JC, Lee EK, Egan MG, Sarkar IN, Coruzzi GM, DeSalle R (2006) OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinformatics 22: 699-707
    • (2006) Bioinformatics , vol.22 , pp. 699-707
    • Chiu, J.C.1    Lee, E.K.2    Egan, M.G.3    Sarkar, I.N.4    Coruzzi, G.M.5    DeSalle, R.6
  • 4
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 5
    • 4944233611 scopus 로고    scopus 로고
    • PhyloGenie: Automated phylome generation and analysis
    • Frickey T, Lupas AN (2004) PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res 32: 5231-5238
    • (2004) Nucleic Acids Res , vol.32 , pp. 5231-5238
    • Frickey, T.1    Lupas, A.N.2
  • 6
    • 27244445968 scopus 로고    scopus 로고
    • Genome cluster database. A sequence family analysis platform for Arabidopsis and rice
    • Horan K, Lauricha J, Bailey-Serres J, Raikhel N, Girke T (2005) Genome cluster database. A sequence family analysis platform for Arabidopsis and rice. Plant Physiol 138: 47-54
    • (2005) Plant Physiol , vol.138 , pp. 47-54
    • Horan, K.1    Lauricha, J.2    Bailey-Serres, J.3    Raikhel, N.4    Girke, T.5
  • 7
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • Hubbell E, Liu WM, Mei R (2002) Robust estimators for expression analysis. Bioinformatics 18: 1585-1592
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.M.2    Mei, R.3
  • 8
    • 33751071837 scopus 로고    scopus 로고
    • Branching genes are conserved across species. Genes controlling a novel signal in pea are coregulated by other long-distance signals
    • Johnson X, Brcich T, Dun EA, Goussot M, Haurogne K, Beveridge CA, Rameau C (2006) Branching genes are conserved across species. Genes controlling a novel signal in pea are coregulated by other long-distance signals. Plant Physiol 142: 1014-1026
    • (2006) Plant Physiol , vol.142 , pp. 1014-1026
    • Johnson, X.1    Brcich, T.2    Dun, E.A.3    Goussot, M.4    Haurogne, K.5    Beveridge, C.A.6    Rameau, C.7
  • 9
    • 0034992826 scopus 로고    scopus 로고
    • The closest BLAST hit is often not the nearest neighbor
    • Koski LB, Golding GB (2001) The closest BLAST hit is often not the nearest neighbor. J Mol Evol 52: 540-542
    • (2001) J Mol Evol , vol.52 , pp. 540-542
    • Koski, L.B.1    Golding, G.B.2
  • 10
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ Jr, Roos DS (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr, C.J.2    Roos, D.S.3
  • 11
    • 34547830867 scopus 로고    scopus 로고
    • Comparative analysis of microarray normalization procedures: Effects on reverse engineering gene networks
    • Lim WK, Wang K, Lefebvre C, Califano A (2007) Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. Bioinformatics 23: 282-288
    • (2007) Bioinformatics , vol.23 , pp. 282-288
    • Lim, W.K.1    Wang, K.2    Lefebvre, C.3    Califano, A.4
  • 12
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: A comprehensive database of eukaryotic orthologs
    • O'Brien KP, Remm M, Sonnhammer EL (2005) Inparanoid: a comprehensive database of eukaryotic orthologs. Nucleic Acids Res 33: D476-480
    • (2005) Nucleic Acids Res , vol.33
    • O'Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.3
  • 13
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 15
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ (1997) A genomic perspective on protein families. Science 278: 631-637
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 17
    • 2442601878 scopus 로고    scopus 로고
    • A Model Based Background Adjustment for Oligonucleotide Expression Arrays
    • Technical Report. Department of Biostatistics Working Papers. John Hopkins University, Baltimore, MD
    • Wu Z, Irizarry RA, Gentleman R, Murillo FM, Spencer F (2004) A Model Based Background Adjustment for Oligonucleotide Expression Arrays. Technical Report. Department of Biostatistics Working Papers. John Hopkins University, Baltimore, MD
    • (2004)
    • Wu, Z.1    Irizarry, R.A.2    Gentleman, R.3    Murillo, F.M.4    Spencer, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.