Plant eco-devo: The potential of poplar as a model organism

New Phytologist

Volumn 166, Issue 1, 2005, Pages 39-48

  Cronk, Q C B ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Adaptive recursion; Ecological developmental genetics; Ecomolecular synthesis; Plant ecodevo; Poplar; Populus trichocarpa; Single nucleotide polymorphisms

Indexed keywords

GENETICS;

ADAPTATION; ASPEN; ECOSYSTEM; GENETICS; GENOME; PHYSIOLOGY; REVIEW;

ADAPTATION, PHYSIOLOGICAL; ECOSYSTEM; GENOME, PLANT; POPULUS;

POPULUS; POPULUS BALSAMIFERA SUBSP. TRICHOCARPA; POPULUS BEROLINENSIS;

EID: 15944387958     PISSN: 0028646X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2005.01369.x     Document Type: Review

References (65)

1. APG. 2003. An update of the Angiosperm Phylogeny Group classification for the orders and families of the flowering plants: APG II. Botanical Journal of the Linnean Society 141: 399-436.
2. Bassman JH, Zwier JC. 1991. Gas exchange characteristics of Populus trichocarpa, Populus deltoides and Populus deltoides x trichocarpa clones. Tree Physiology 8: 145-159.
3. Boes TK, Strauss SH. 1994. Floral phenology and morphology of black cottonwood, Populus trichocarpa (Salicaceae). American Journal of Botany 81: 562-567.
4. Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. 2003. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Research 13: 513-523.
5. Boucher LD, Manchester SR, Judd WS. 2003. An extinct genus of Salicaceae based on twigs with attached flowers fruits, and foliage from the Eocene Green River Formation of Utah and Colorado, USA. American Journal of Botany 90: 1389-1399.
6. Bradshaw HD, Stettler RF. 1995. Molecular genetics of growth and development in Populus, IV, mapping QTLs with large effects on growth, form and phenology traits in a forest tree. Genetics 139: 963-973.
7. Browicz K. 1966. Populus ilicifolia (Engler) Rouleau and its taxonomic position. Acta Societatia Botanica Polonica 35: 325-335.
8. Brunner AM, Busov V, Strauss SH. 2004. The poplar genome sequence: functional genomics in a keystone plant species. Trends in Plant Science 9: 49-56.
9. Busov V, Meilan R, Pearce DW, Ma C, Rood SB, Stauss SH. 2003. Activation tagging of a dominant giberellin catabolism gene (GA2-oxidase) from poplar that regulates tree stature. Plant Physiology 132: 1283-1291.
10. Ceulemans R, Stettler RF, Hinckley TM, Issebrands JG, Heilman PE. 1990. Crown architecture of Populus clones as determined by branch characteristics. Tree Physiology 7: 157-167.
11. Chaney RW, Axelrod DI. 1959. Miocene Floras of the Columbia Plateau. Part 2: Systematic Considerations. Carnegie Institution of Washington Publication 617. Washington DC, USA: Carnegie Institution, 135-237.
12. Chase MW, Zmarzty S, Lledo MD, Wurdack KJ, Swensen SM, Fay MF. 2002. When in doubt, put it in Flacourtiaceae: a molecular phylogenetic analysis based on plastid rbcL DNA sequences. Kew Bulletin 57: 141-181.
13. Citerne HL, Luo D, Pennington RT, Coen E, Cronk QCB. 2003. A phylogenomic investigation of CYCLOIDEA-like TCP genes in the Leguminosae. Plant Physiology 131: 1042-1053.
14. Collinson ME. 1992. The early fossil history of Salicaceae - a brief review. Proceedings of the Royal Society of Edinburgh Section B - Biology Sciences 98: 155-167.
15. Comai L, Young K, Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Henikoff S. 2004. Efficient discovery of DNA polymorphisms in natural populations by ecotilling. Plant Journal 37: 778-786.
16. Cornelissen T, Stiling P. 2005. Perfect is best: low leaf fluctuating asymmetry reduces herbivory by leaf miners. Oecologia 142: 46-56.
17. Cronk QCB. 2001. Plant evolution and development in a post-genomic context. Nature Reviews Genetics 2: 607-619.
18. Cronk QCB. 2002. Perspectives and paradigms in plant evo-devo. In: Cronk QCB, Bateman RM, Hawkins JA, eds. Developmental Genetics and Plant Evolution. London, UK: Taylor & Francis, 1-14.
19. Cronk QCB. 2004a. The new science of plant adaptation. In: Cronk QCB, Whitton J, Ree R, Taylor IEP, eds. Plant Adaptation: Molecular Biology and Ecology. Ottawa, Canada: NRC Research Press, 1-12.
20. Cronk QCB. 2004b. L-A Dode on poplar: a commentary on the 'Extraits d'une monographie inédite du genre Populus' (1905). Davidsonia 15: 87-96.
21. Curtis JD, Lersten NR. 1974. Morphology, seasonal-variation, and function of resin glands on buds and leaves of Populus deltoides (Salicaceae). American Journal of Botany 61: 835-845.
22. Curtis JD, Lersten NR. 1978. Heterophylly in Populus grandidentata (Salicaceae) with emphasis on resin glands and extrafloral nectaries. American Journal of Botany 65: 1003-1010.
23. Eckenwalder JE. 1977. North American cottonwoods (Populus, Salicaceae) of sections Abaso and Aigeiros. Journal of the Arnold Arboretum 58: 193-208.
24. Eckenwalder JE. 1980. Foliar heteromorphism in Populus (Salicaceae), a source of confusion in the taxonomy of Tertiary leaf remains. Systematic Botany 5: 366-383.
25. Eckenwalder JE. 1984. Natural intersectional hybridization between North American species of Populus (Salicaceae) in sections Aigeiros and Tacamahaca. 3. Paleobotany and evolution. Canadian Journal of Botany 62: 336-342.
26. Farmer RE. 1996. The genecology of Populus. In: Stettler RF, Bradshaw HD, Heilman PE, Hinckley TM, eds. Biology of Populus and its Implications for Management and Conservation. Ottawa, Canada: NRC Research Press.
27. Floate KD. 2004. Extent and patterns of hybridization among the three species of Populus that constitute the riparian forest of southern Alberta, Canada. Canadian Journal of Botany 82: 253-264.
28. Floate KD, Martinsen GD, Whitham TG. 1997. Cottonwood hybrid zones as centers of abundance for gall aphids in western North America: importance of relative habitat size. Journal of Animal Ecology 66: 179-188.
29. Frewen BE, Chen TH, Howe GT, Davis J, Rohde A, Boerjon W, Bradshaw HD. 2000. Qualitative trait loci and candidate gene mapping of bud set and bud flush in Populus. Genetics 154: 837-845.
30. Gornall JL, Guy RD. 2002. Geographic variation in ecophysiological traits of black cottonwood (Populus trichocarpa) from western North America (Abstract). In: Plant Biology Canada 2002, Annual Meeting of the Canadian Society of Plant Physiologists. Calgary, AB, Canada: Canadian Society of Plant Physiologists, 49.
31. Greenaway W, English S, Whatley FR. 1992. Relationships of Populus x acuminata and Populus x generosa with their parental species examined by gas-chromatography - mass-spectrometry of bud exudates. Canadian Journal of Botany 70: 212-221.
32. Gunter LE, Kopp RF, McCord RP, Tuskan GA. 2003. Analysis of sex-linked, sequence-characterized amplified region markers in Salix eriocephala. Canadian Journal of Forest Research 33: 1785-1790.
33. Hamzeh M, Dayanandan S. 2004. Phylogeny of Populus (Salicaceae) based on nucleotide sequences of chloroplast trnT-trnF region and nuclear rDNA. American Journal of Botany 91: 1398-1408.
34. Havill NP, Raffa KF. 1999. Effects of elicitation treatment and genotypic variation on induced resistance in Populus: impacts on gypsy moth (Lepidoptera: Lymantridae) development and feeding behaviour. Oecologia 120: 295-303.
35. Howe GT, Bucciaglia PA, Hackett WP, Furnier GR, Cordonnier-Pratt MM, Gardner G. 1998. Evidence that the phytochromc gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies. Molecular Biology and Evolution 15: 160-175.
36. Ingvarsson PK. 2004. Nucleotide polymorphism and linkage disequilibrium within and among natural populations of European aspen (Populus tremula L., Salicaceae). Genetics (in press.)
37. Kalischuk AR, Gom LA, Floate KD, Rood SB. 1997. Intersectional cottonwood hybrids are particularly susceptible to the poplar bud gall mite. Canadian Journal of Botany 75: 1349-1355.
38. Kaul RB. 1995. Reproductive structure and organogenesis in a cottonwood, Populus deltoides (Salicaceae). International Journal of Plant Sciences 156: 172-180.
39. Lamotte RS. 1952. Catalogue of the Cenozoic Plants of North America Through 1950. The Geological Society of America Memoir 51, New York, USA: Geological Society of America.
40. Leskinen E, Alstrom-Rapaport C. 1999. Molecular phylogeny of Salicaceae and closely related Flacourtiaceae: evidence from 5.8S, ITS1 and ITS2 of the rDNA. Plant Systematics and Evolution 215: 209-227.
41. Li B, Wu R. 1997. Heterosis and genotype-environment interactions of juvenile aspens in two contrasting sites. Canadian Journal of Forestry Research 27: 1525-1537.
42. Mai DH. 1995. Tertiäre Vegetationsgeschichte Europas. Jena, Germany: Gustav Fischer.
43. Manchester SR, Dilcher DL, Tidwell WD. 1986. Interconnected reproductive and vegetative remains of Populus (Salicaceae) from the middle Eocene Green River Formation, northeastern Utah. American Journal of Botany 73: 156-160.
44. Martinsen GD, Whitham TG, Turek RJ, Keim P. 2001. Hybrid populations selectively filter gene introgression between species. Evolution 55: 1325-1335.
45. Mitton JB, Grant MC. 1996. Genetic variation and natural history of quaking aspen. Bioscience 46: 25-31.
46. Pearce DW, Rood SB, Wu R. 2004. Phytohormones and shoot growth in a three-generation hybrid poplar family. Tree Physiology 24: 217-224.
47. Purugganan MD, Suddith JI. 1998. Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: nonneutral evolution and naturally occurring variation in floral homeotic function. Proceedings of the National Academy of Sciences USA 95: 8130-8134.
48. Ramirez JL, Cevallos-Ferriz SRS. 2000. Leaves of Salicaceae (Salix and Populus) from Oligocene sediments near Tepexi de Rodriguez, Puebla, Mexico. International Journal of Plant Sciences 161: 521-534.
49. Roden JS, Pearcy RW. 1993. The effect of flutter on the temperatures of poplar leaves and its implications for carbon gain. Plant Cell and Environment 16: 571-577.
50. Rottmann WH, Meilan R, Sheppard LA, Brunner AM, Skinner JS, Ma CP, Cheng SP, Jouanin L, Pilate G, Strauss SH. 2000. Diverse effects of overexpression of LEAFY and PTLF, a poplar (Populus) homolog of LEAFY/FLORICAULA, in transgenic poplar and Arabidopsis. Plant Journal 22: 235-245.
51. Russin WA, Evert RF. 1984. Studies on the leaf of Populus deltoides (Salicaceae) - morphology and anatomy. American Journal of Botany 71: 1398-1415.
52. Schweitzer JA, Martinsen GD, Whitham TG. 2002. Cottonwood hybrids gain fitness traits of both parents: a mechanism for their long-term persistence? American Journal of Botany 89: 981-990.
53. Semerikov V, Lagercrantz U, Tsarouhas V, Ronnberg-Wastljung A, Alstrom-Rapaport C, Lascoux M. 2003. Genetic mapping of sex-linked markers in Salix viminalis L. Heredity 91: 293-299.
54. Shi QL, Zhuge Q, Huang MR, Wang MX. 2001. Phylogenetic relationship of Populus sections by ITS sequence analysis. Acta Botanica Sinica 43: 323-325.
55. Smith EC. 1943. A study of cytology and speciation in the genus Populus L. Journal of the Arnold Arboretum 24: 275-305.
56. Stettler RF. 1980. Interspecific crossability studies in poplars. Theoretical and Applied Genetics 58: 273-282.
57. Stolz U, Velez S, Wood KV, Wood M, Feder JL. 2003. Darwinian natural selection for orange bioluminescent color in a Jamaican click beetle. Proceedings of the National Academy of Sciences USA 100: 14955-14959.
58. Thiebaut M. 2000. A foliar morphometric approach to the study of Salicaceae. Botanical Review 66: 423-439.
59. Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Young K, Taylor NE, Henikoff JG, Comai L, Henikoff S. 2003. Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Research 13: 524-530.
60. Villar M, Lefevre F, Bradshaw HD, Teissier du Cros E. 1996. Molecular genetics of rust resistance in poplars (Melampsora larici-populina Kleb./Populus sp.) by bulked segregant analysis in a 2, x, 2 factorial mating design. Genetics 143: 531-536.
61. Wang C, Fang CF. 1984. Salicaceae. In: Yü T., ed. Flora Reipublicae Popularis Sinicae 20, Beijing, China: Science Press, 1-403.
62. Whitham TG, Young W, Martinsen GD, Gehring CA, Schweitzer JA, Shuster SM, Wimp GM, Fischer DG, Bailey JK, Lindroth RL, Woolbright S, Kuske CR. 2002. Community and ecosystem genetics: a consequence of the extended phenotype. Ecology 84: 559-573.
63. Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J. 2004. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics 167: 907-917.
64. Wu R, Bradshaw HD, Stettler RF. 1997. Molecular genetics of growth and development in Populus (Salicaceae). 5. Mapping quantitative trait loci affecting leaf variation. American Journal of Botany 84: 143-153.
65. Yuceer C, Land SB, Kubiske ME, Harkess RL. 2003. Shoot morphogenesis associated with flowering in Populus deltoides (Salicaceae). American Journal of Botany 90: 196-206.