Patterns of GATA3 and IL13 gene polymorphisms associated with childhood rhinitis and atopy in a birth cohort

Journal of Allergy and Clinical Immunology

Volumn 121, Issue 2, 2008, Pages 408-414

  Huebner, Marianne ^a   Kim, Dong Yun ^b   Ewart, Susan ^a   Karmaus, Wilfried ^c   Sadeghnejad, Alireza ^d   Arshad, Syed H ^e  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^c UNIVERSITY OF SOUTH CAROLINA   (United States)

^d WAKE FOREST UNIVERSITY   (United States)

^e UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

allergic rhinitis; atopy; GATA3; gene gene interactions; genetic association; IL13; Rhinitis

Indexed keywords

INTERLEUKIN 13; TRANSCRIPTION FACTOR GATA 3;

ALLERGIC RHINITIS; ARTICLE; ATOPY; CHILD; CHILD CARE; COHORT ANALYSIS; CONTROLLED STUDY; DNA POLYMORPHISM; GENE INTERACTION; GENE SEQUENCE; GENETIC ASSOCIATION; GENOTYPE; HUMAN; MAJOR CLINICAL STUDY; PHENOTYPE; PRICK TEST; PRIORITY JOURNAL; RISK FACTOR; SINGLE NUCLEOTIDE POLYMORPHISM;

CHILD; COHORT STUDIES; FEMALE; GATA3 TRANSCRIPTION FACTOR; GENOTYPE; HUMANS; HYPERSENSITIVITY, IMMEDIATE; INTERLEUKIN-13; MALE; MULTIFACTORIAL INHERITANCE; PHENOTYPE; POLYMORPHISM, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; RHINITIS; SKIN TESTS;

EID: 38949101989     PISSN: 00916749     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jaci.2007.09.020     Document Type: Article

References (34)

1. The International Study of Asthma and Allergies in Childhood (ISAAC) Steering Committee. Worldwide variation in prevalence of symptoms of asthma, allergic rhinoconjunctivitis, and atopic eczema: ISAAC. Lancet 351 (1998) 1225-1232
2. Latvala J., von Hertzen L., Lindholm H., and Haahtela T. Trends in prevalence of asthma and allergy in Finnish young men: nationwide study, 1966-2003. BMJ 330 (2005) 1186-1187
3. Wright A.L., Holberg C.J., Martinez F.D., Halonen M., Morgan W., and Taussig L.M. Epidemiology of physician-diagnosed allergic rhinitis in childhood. Pediatrics 94 (1994) 895-901
4. Lundback B. Epidemiology of rhinitis and asthma. Clin Exp Allergy 28 suppl 2 (1998) 3-10
5. Arshad S.H., Kurukulaaratchy R.J., Fenn M., Waterhouse L., and Matthews S. Rhinitis in 10-year-old children and early life risk factors for its development. Acta Paediatr 91 (2002) 1334-1338
6. Pykalainen M., Kinos R., Valkonen S., Rydman P., Kilpelainen M., Laitinen L.A., et al. Association analysis of common variants of STAT6, GATA3, and STAT4 to asthma and high serum IgE phenotypes. J Allergy Clin Immunol 115 (2005) 80-87
7. Ewart S.L., Kuperman D., Schadt E., Tankersley C., Grupe A., Shubitowski D.M., et al. Quantitative trait loci controlling allergen-induced airway hyperresponsiveness in inbred mice. Am J Respir Cell Mol Biol 23 (2000) 537-545
8. Hunninghake G.M., Soto-Quiros M.E., Avila L., Su J., Murphy A., Demeo D.L., et al. Polymorphisms in IL13, total IgE, eosinophilia, and asthma exacerbations in childhood. J Allergy Clin Immunol 120 (2007) 84-90
9. DeMeo D.L., Lange C., Silverman E.K., Senter J.M., Drazen J.M., Barth M.J., et al. Univariate and multivariate family-based association analysis of the IL-13 ARG130GLN polymorphism in the Childhood Asthma Management Program. Genet Epidemiol 23 (2002) 335-348
10. Graves P.E., Kabesch M., Halonen M., Holberg C.J., Baldini M., Fritzsch C., et al. A cluster of seven tightly linked polymorphisms in the IL-13 gene is associated with total serum IgE levels in three populations of white children. J Allergy Clin Immunol 105 (2000) 506-513
11. Heinzmann A., Mao X.Q., Akaiwa M., Kreomer R.T., Gao P.S., Ohshima K., et al. Genetic variants of IL-13 signalling and human asthma and atopy. Hum Mol Genet 9 (2000) 549-559
12. Howard T.D., Whittaker P.A., Zaiman A.L., Koppelman G.H., Xu J., Hanley M.T., et al. Identification and association of polymorphisms in the interleukin-13 gene with asthma and atopy in a Dutch population. Am J Respir Cell Mol Biol 25 (2001) 377-384
13. Hummelshoj T., Bodtger U., Datta P., Malling H.J., Oturai A., Poulsen L.K., et al. Association between an interleukin-13 promoter polymorphism and atopy. Eur J Immunogenet 30 (2003) 355-359
14. Kim H.B., Lee Y.C., Lee S.Y., Jung J., Jin H.S., Kim J.H., et al. Gene-gene interaction between IL-13 and IL-13Ralpha1 is associated with total IgE in Korean children with atopic asthma. J Hum Genet 51 (2006) 1055-1062
15. Wang M., Xing Z.M., Lu C., Ma Y.X., Yu D.L., Yan Z., et al. A common IL-13 Arg130Gln single nucleotide polymorphism among Chinese atopy patients with allergic rhinitis. Hum Genet 113 (2003) 387-390
16. Kurukulaaratchy R.J., Fenn M., Twiselton R., Matthews S., and Arshad S.H. The prevalence of asthma and wheezing illnesses amongst 10-year-old schoolchildren. Respir Med 96 (2002) 163-169
17. Arshad S.H., Tariq S.M., Matthews S., and Hakim E. Sensitization to common allergens and its association with allergic disorders at age 4 years: a whole population birth cohort study. Pediatrics 108 (2001) e33
18. Vercelli D. Genetics of IL-13 and functional relevance of IL-13 variants. Curr Opin Allergy Clin Immunol 2 (2002) 389-393
19. Gabriel S.B., Schaffner S.F., Nguyen H., Moore J.M., Roy J., Blumenstiel B., et al. The structure of haplotype blocks in the human genome. Science 296 (2002) 2225-2229
20. Akaike H. A new look at the statistical model identification. IEEE Trans Automatic Control 19 (1974) 716-723
21. Breiman L. Random Forests. Machine Learn 45 (2002) 5-32
22. Efron B., and Tibshirani R. An introduction to the bootstrap (1994), Chapman & Hall/CRC, Boca Raton (FL)
23. Kurukulaaratchy R.J., Matthews S., Holgate S.T., and Arshad S.H. Predicting persistent disease among children who wheeze during early life. Eur Respir J 22 (2003) 767-771
24. Koeppen-Schomerus G., Stevenson J., and Plomin R. Genes and environment in asthma: a study of 4 year old twins. Arch Dis Child 85 (2001) 398-400
25. World Allergy Organization. Combined allergic rhinitis and asthma syndrome. Available at: http://www.worldallergy.org/professional/allergy_update/caras/airwayssynopsis.shtml. Accessed May 2007.
26. Battle N.C., Choudhry S., Tsai H.J., Eng C., Kumar G., Beckman K.B., et al. Ethnicity-specific gene-gene interaction between IL-13 and IL-4Ralpha among African Americans with asthma. Am J Respir Crit Care Med 175 (2007) 881-887
27. Chan I.H., Leung T.F., Tang N.L., Li C.Y., Sung Y.M., Wong G.W., et al. Gene-gene interactions for asthma and plasma total IgE concentration in Chinese children. J Allergy Clin Immunol 117 (2006) 127-133
28. Howard T.D., Koppelman G.H., Xu J., Zheng S.L., Postma D.S., Meyers D.A., et al. Gene-gene interaction in asthma: IL4RA and IL13 in a Dutch population with asthma. Am J Hum Genet 70 (2002) 230-236
29. Powe D.G., and Jones N.S. Local mucosal immunoglobulin E production: does allergy exist in non-allergic rhinitis?. Clin Exp Allergy 36 (2006) 1367-1372
30. Goodman J.E., Mechanic L.E., Luke B.T., Ambs S., Chanock S., and Harris C.C. Exploring SNP-SNP interactions and colon cancer risk using polymorphism interaction analysis. Int J Cancer 118 (2006) 1790-1797
31. Onay V.U., Briollais L., Knight J.A., Shi E., Wang Y., Wells S., et al. SNP-SNP interactions in breast cancer susceptibility. BMC Cancer 6 (2006) 114
32. Ritchie M.D., Hahn L.W., and Moore J.H. Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity. Genet Epidemiol 24 (2003) 150-157
33. Hahn L.W., Ritchie M.D., and Moore J.H. Multifactor dimensionality reduction software for detecting gene-gene and gene-environment interactions. Bioinformatics 19 (2003) 376-382
34. Bureau A., Dupuis J., Falls K., Lunette K., Hayward B., Keith T., et al. Identifying SNPs predictive of phenotype using random forests. Gen Epidemiol 28 (2005) 171-182