Evolution of complexity in miRNA-mediated gene regulation systems

Trends in Genetics

Volumn 24, Issue 2, 2008, Pages 56-59

  Takuno, Shohei ^a,b   Innan, Hideki ^a,c  

^a UNIVERSITY OF TEXAS SCHOOL OF PUBLIC HEALTH   (United States)

^b TOHOKU UNIVERSITY   (Japan)

^c GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

ARABIDOPSIS; GENE DUPLICATION; GENE NUMBER; GENE REGULATORY NETWORK; GENETIC SELECTION; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; SHORT SURVEY;

ARABIDOPSIS; BASE SEQUENCE; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MICRORNAS; MODELS, GENETIC; MULTIGENE FAMILY; RNA, PLANT; SELECTION (GENETICS);

ARABIDOPSIS;

EID: 38749123986     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tig.2007.11.002     Document Type: Short Survey

References (25)

1. Darwin C. The Origin of Species (1859), John Murray
2. Lenski R.E., et al. The evolutionary origin of complex features. Nature 423 (2003) 139-144
3. Wagner A. Robustness and Evolvability in Living Systems (2005), Princeton University Press
4. Bridgham J.T., et al. Evolution of hormone-receptor complexity by molecular exploitation. Science 312 (2006) 97-101
5. Fraser H.B. Coevolution, modularity and human disease. Curr. Opin. Genet. Dev. 16 (2006) 637-644
6. Lynch M., and Conery J.S. The origins of genome complexity. Science 302 (2003) 1401-1404
7. Yang J., et al. Organismal complexity, protein complexity, and gene duplicability. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 15661-15665
8. Conant G.C., and Wagner A. Convergent evolution of gene circuits. Nat. Genet. 34 (2003) 264-266
9. Papp B., et al. Evolution of cis-regulatory elements in duplicated genes of yeast. Trends Genet. 19 (2003) 417-422
10. Conant G.C., and Wolfe K.H. Functional partitioning of yeast co-expression networks after genome duplication. PLoS Biol. 4 (2006) e109
11. Freeling M., and Thomas B.C. Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity. Genome Res. 16 (2006) 805-814
12. Carrington J.C., and Ambros V. Role of microRNAs in plant and animal development. Science 301 (2003) 336-338
13. Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116 (2004) 281-297
14. He L., and Hannon G.J. MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet. 5 (2004) 522-531
15. Maher C., et al. Evolution of Arabidopsis microRNA families through duplication events. Genome Res. 16 (2006) 510-519
16. Jiang D., et al. Duplication and expression analysis of multicopy miRNA gene family members in Arabidopsis and rice. Cell Res. 16 (2006) 507-518
17. Chen K., and Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat. Rev. Genet. 8 (2007) 93-103
18. Chaw S.M., et al. Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes. J. Mol. Evol. 58 (2004) 424-441
19. Floyd S.K., and Bowman J.L. Ancient microRNA target sequences in plants. Nature 428 (2004) 485-486
20. Axtell M.J., and Bartel D.P. Antiquity of microRNAs and their targets in land plants. Plant Cell 17 (2005) 1658-1673
21. Dezulian T., et al. Conservation and divergence of microRNA families in plants. Genome Biol. 6 (2005) 13
22. Guddeti S., et al. Molecular evolution of the rice miR395 gene family. Cell Res. 15 (2005) 631-638
23. Tanzer A., and Stadler P.F. Molecular evolution of a microRNA cluster. J. Mol. Biol. 339 (2004) 327-335
24. Blanc G., and Wolfe K.H. Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16 (2004) 1679-1691
25. Zimmermann P., et al. GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 136 (2004) 2621-2632