The endophytic mycobiota of the grass Dactylis glomerata

Fungal Diversity

Volumn 27 I, Issue , 2007, Pages 171-195

  Márquez, Salud Sánchez ^a   Bills, Gerald F ^b   Zabalgogeazcoa, Iñigo ^a  

^a INSTITUTO DE RECURSOS NATURALES Y AGROBIOLOGÍA DE SALAMANCA   (Spain)

^b Medical affairs Merck sharp and Dohme ltd   (Spain)

Author keywords

Biodiversity; Endophytes; ITS; rDNA

Indexed keywords

DACTYLIS; DACTYLIS GLOMERATA; FUNGI; MYCOTA;

EID: 38749110431     PISSN: 15602745     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (47)

1. Arnold, A.E., Mejia, L.C., Kyllo, D., Rojas, E.I., Maynard, Z., Robbins, N. and Herre, E.A. (2003). Fungal endophytes limit pathogen damage in a tropical tree. Proceedings of the National Academy of Sciences USA 100: 15649-15654.
2. Bills, G.F. (1996). Isolation and analysis of endophytic fungal communities from woody plants. In: Endophytic fungi in grasses and woody plants (eds. S.C. Erdlin, L.M. Carris). APS Press, USA: 31-65.
3. Bouton, J. and Easton, S. (2005). Endophytes in forage cultivars. In: Neotyphodium in cool-season grasses (eds. C.A. Roberts, C.P. West, D.E. Spiers). Blackwell Publishing, USA: 327-340.
4. Chazdon, R.L., Colwell, R.K., Denslow, J.S. and Guariguata, M.R. (1998). Statistical methods for estimating species richness of woody regeneration in primary and secondary rain forests of NE Costa Rica. In: Forest biodiversity research, monitoring and modeling: Conceptual background and Old World case studies. (eds. F. Dallmeier, J.A. Comiskey). Parthenon Publishing, France: 285-309.
5. Clay, K. and Schardl, C. (2002). Evolutionary origins and ecological consequences of endophyte symbiosis with grasses. The American Naturalist 160S: 99-127.
6. Colwell, R.K. (2005). EstimateS: Statistical estimation of species richness and shared species from samples. Version 7.5. Persistent URL .
7. Colwell, R.K. and Coddington, J.A. (1994). Estimating terrestrial biodiversity through extrapolation. Philosophical Transactions of the Royal Society. England, Series B 345, 101-118.
8. Crous, P.W., Groenewald, J.Z. and Gams, W. (2003). Eyespot of cereals revisited: ITS phylogeny reveals new species relationships. European Journal of Plant Pathology 109: 841-850.
9. Crozier, J., Thomas, S.E., Aime, M.C., Evans, H.C. and Holmes, K.A. (2006). Molecular characterization of fungal endophytic morphospecies isolated from stems and pods of Theobroma cacao. Plant Pathology 55:783-791.
10. Devarajan, P.T. and Suryanarayanan, T.S. (2006). Evidence for the role of phytophagous insects in dispersal of non-grass fungal endophytes. Fungal Diversity 23: 111-119.
11. Duong, L.M., Jeewon, R., Lumyong, S. and Hyde, K.D. (2006). DGGE coupled with ribosomal DNA gene phylogenies reveal uncharacterized fungal endophytes. Fungal Diversity 23: 121-138.
12. Ernst, M., Mendgen, K. and Wirsel, S.G.R. (2003). Endophytic fungal mutualists: Seed-borne Stagonospora sp. enhance reed biomass production in axenic microcosms. Molecular Plant-Microbe Interactions 16: 580-587.
13. Farr, D.F., Bills, G.F., Chamuris, G.P. and Rossman, A. Y. (1989). Fungi on plants and plant products in the United States. American Phytopathological Society Press, USA.
14. Ganley, R.J. and Newcombe, G. (2006). Fungal endophytes in seeds and needles of Pinus monticola. Mycological Research 110:318-327.
15. Gonthier, P., Gennaro, M. and Nicolotti, G. (2006). Effects of water stress on the endophytic mycota of Quercus robur. Fungal Diversity 21: 69-80.
16. Gotelli, N.J. and Colwell, R.K. (2001). Qualifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecology Letters 4: 379-391.
17. Guo, L.D., Hyde, K.D. and Liew, E.C.Y. (2000). Identification of endophytic fungi from Livistonia chinensis based on morphology and rDNA sequences. New Phytologist 147: 617-630.
18. Hawksworth, D.L. and Rossman, A.Y. (1997). Where are all the undescribed fungi?. Phytopathology 87: 888-891.
19. Higgins K.L., Arnold, A.E., Miadlikowska, J., Sarvate, S.D. and Lutzoni, F. (2007). Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages. Molecular Phylogenetics and Evolution 42: 543-555.
20. Kauhanen, M., Vainio, E.J., Hantula, J., Eyjolfsdottir, G.G. and Niemelä, P. (2006). Endophytic fungi in Siberian larch (Larix sibirica) needles. Forest Pathology 36:434-446.
21. Kumar, S., Tamura, K. and Nei, M. (2004). MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. In: Briefings in Bioinformatics. Vol 5. Oxford univ Press, USA: 150-163.
22. Lumaret, R. (1988). Cytology, genetics, and evolution in the genus Dactylis. Critical Reviews in Plant Sciences 7: 55-91.
23. Mathre, D.E. (1982). Compendium of barley diseases. 2nd edn. American Phytopathological Society Press, USA.
24. Morakotkarn, D., Kawasaki, H. and Seki, T. (2006). Molecular diversity of bamboo-associated fungi isolated from Japan. FEMS Microbiology Letters 266:10-19.
25. Neubert, K., Mendgen, K., Brinkmann, H. and Wirsei, S.G.R. (2006). Only a few fungal species dominate highly diverse mycofloras associated with the common reed. Applied and Environmental Microbiology 72: 1118-1128.
26. O'Brien, H.E., Parrent, J.L., Jackson, J.A., Moncalvo, J.M. and Vilgalys, R. (2005). Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology 71: 5544-5550.
27. Pearson, W.R. (1990). Rapid and Sentive Sequence Comparison with PASTP and FASTA. Methods in Enzymology 183: 63-98.
28. Pinnoi, A., Lumyong, S., Hyde, K.D. and Jones, E.B.G. (2006). Biodiversity of fungi on the palm Eleiodoxa conferta in Sirindhorn peat swamp forest, Narathiwat, Thailand. Fungal Diversity 22: 205-218.
29. Promputtha, I., Jeewon, R., Lumyong, S., McKenzie, E.H.C. and Hyde, K.D. (2005). Ribosomal DNA fingerprinting in the identification of non sporulating endophytes from Magnolia liliifera (Magnoliaceae). Fungal Diversity 20: 167-186.
30. Promputtha, I., Lumyong, S., Dhanasekaran, V., Huge, E., McKenzie, C., Hyde, K.D. and Jeewon, R. (2007). A phylogenetic evaluation of whether endophytes become saprotrophs at host senescence. Microbial Ecology 53: 579-590.
31. Redman, R.S., Sheehan, K.B., Scout, R.G., Rodríguez, R.J. and Henson, J.M. (2002). Thermotolerance generated by plant/fungal symbiosis. Science 298: 1581.
32. Schulz, B. and Boyle, C. (2005). The endophytic continuum. Mycological Research 109: 661-686
33. Schulz, B., Guske, S., Dammann, U. and Boyle, C. (1998). Endophyte-host interactions II. Defining symbiosis of the endophyte-host interaction. Symbiosis 25: 213-227.
34. Stone, J.K., Polishook, J.D. and White Jr, J.F.. (2004). Endophytic fungi. In: Biodiversity of fungi. Inventory and monitoring methods (eds. G.M. Mueller, G.F. Bills, M.S. Foster). Elsevier Academic Press, USA: 241-270.
35. Strobel, G.A. (2002). Rainforest endophytes and bioactive products. Critical Reviews in Biotechnology 22: 315-333.
36. Taylor, J.W., Jacobson, D.J., Kroken, S., Kasuga, T., Geiser, D.M., Hibbett, D.S. and Fisher, M.C. (2000). Phylogenetic species recognition and species concepts in fungi. Fungal Genetics and Biology 31: 21-32.
37. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882.
38. Wang, F.W., Jiao, R.H., Cheng, A.B., Tan, S.H. and Song, Y.C. (2007). Antimicrobial potentials of endophytic fungi residing in Quercus variabilis and brefeldin A obtained from Cladosporium sp. World Journal of Microbiology and Biotechnology 23:79-83.
39. Wang, Y., Guo, L.D. and Hyde, K.D. (2005). Taxonomic placement of sterile morphotypes of endophytic fungi from Pinus tabulaeformis (Pinaceae) in northeast China based on rDNA sequences. Fungal Diversity 20: 235-260.
40. Waller, F., Achatz, B., Baltruschat, H., Fodor, J., Becker, K., Fischer, M., Heier, T., Hückelhoven, R., Neumann, C., von Wettstein, D., Franken, P. and Kogel, K.H. (2005). The endophytic fungus Piriformospora indica reprograms barley to salt-stress tolerance, disease resistance, and higher yield. Proceedings of the National Academy of Sciences 102: 13386-13391.
41. Webster, J. (1956). Succession of fungi on decaying cocksfoot culms. Part I. Journal of Ecology 44: 517-544.
42. Webster, J. (1957). Succession of fungi on decaying cocksfoot culms. Part II. Journal of Ecology 45: 1-29.
43. Wei, Y.K., Gao, Y.B., Zhang, X., Su, D., Wang, Y.H., Xu, H., Lin, F., Ren, A.Z., Chen, L. and Nie, L.Y. (2007). Distribution and diversity of Epichloë/Neotyphodium fungal endophytes from different populations of Achnatherum sibiricum (Poaceae) in the Inner Mongolia Steppe, China. Fungal Diversity 24: 329-345.
44. White, T.J, Bruns, T., Lee, S. and Taylor, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols. A guide to methods and applications (eds. M.A. Innis, D.H.Gelfland, J.J. Sninsky, T.J. White). Academic Press, USA: 315-322.
45. Wiese, M.V. (1987). Compendium of wheat diseases. 2nd ed. American Phytopathological Society Press, USA.
46. Wirsel, S.G.R., Leibinger W., Ernst M. and Mendgen K. (2001). Genetic diversity of fungi commonly associated with common reed. New Phytologist 149: 589-598.
47. Zak, J.C. and Willig, M.R. (2004). Fungal biodiversity patterns. In: Biodiversity of fungi. Inventory and monitoring methods (eds. G.M. Mueller, G.F. Bills, M.S. Foster). Elsevier Academic Press, USA: 59-75.