Molecular diversity of bamboo-associated fungi isolated from Japan

FEMS Microbiology Letters

Volumn 266, Issue 1, 2007, Pages 10-19

  Morakotkarn, Doungporn ^a   Kawasaki, Hiroko ^a   Seki, Tatsuji ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

Bamboos; Diversity; Endophytes; Fungi; Phylogeny

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RIBOSOME RNA; RNA 18S;

ARTICLE; BAMBOO; DOTHIDEOMYCETES; ENDOPHYTE; FUNGAL STRAIN; FUNGUS; FUNGUS ISOLATION; GENE SEQUENCE; GENETIC VARIABILITY; JAPAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PARSIMONY ANALYSIS; PHYLOGENY; PLANT; PRIORITY JOURNAL; RNA GENE; SEQUENCE ANALYSIS; SORDARIOMYCETES; SPHAERIALES;

BAMBUSA; DNA, RIBOSOMAL SPACER; FUNGI; JAPAN; PHYLOGENY; RNA, RIBOSOMAL, 18S; SASA;

BAMBUSA; DOTHIDEOMYCETES; FUNGI; SORDARIOMYCETES; XYLARIALES;

EID: 33845542867     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00489.x     Document Type: Article

References (39)

1. Abou-Zaid M, Dumas M, Chauret D, Watson A & Thompson D (1997) C-methyl flavonols from the fungus Colletotrichum dematium f.sp. epilobii. Phytochemistry 45: 957-961.
2. Anderson AJ, Kwon SI, Carnicero A & Falcon MA (2005) Two isolates of Fusarium proliferatum from different habitats and global locations have similar ablities to degrade lignin. FEMS Microbiol Lett 249: 149-155.
3. Azevedo JL, Maccheroni WJ, Pereira JO & Araújo WL (2000) Endophytic microorganisms: a review on insect control and recent advances on tropical plants. Environ Biotech 3: 40-65.
4. Bayman P, Angulo-Sandoval P, Báez-Oritz Z & Lodge DJ (1998) Distribution and dispersal of Xylaria endophytes in two tree species in Puerto Rico. Mycol Res 102: 944-948.
5. Berbee ML (2001) The phylogeny of plant and animal pathogens in the Ascomycota. Physiol Mol Plant pathol 59: 165-187.
6. Bruns TD, Vilgalys R, Barns SM et al. (1992) Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences. Mol Phylogenet Evol 1: 231-241.
7. Castlebury LA, Rossman AY, Jaklitsch WJ & vasilyeva LN (2002) A preliminary overview of the Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94: 1017-1031.
8. Cheng TF, Jia XM, Ma XH, Lin HP & Zhao YH (2004) Phylogenetic study on Shiraia bambusicola by rDNA sequence analyses. J Basic Microbiol 44: 339-350.
9. Clay K (1990) Fungal endophytes of grasses. Annu Rev Ecol Syst 21: 275-297.
10. Davis EC, Franklin JB, Shaw AJ & Vilgalys R (2003) Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis. Am J Bot 90: 1661-1667.
11. Eriksson OE & Yue JZ (1998) Bambusicolous pyrenomycetes, an annotated check list. Myconet 1: 25-78.
12. Gao XX, Zhou H, Xu DY, Yu CH, Chen YQ & Qu LH (2005) High diversity of endophytic fungi from pharmaceutical plant, Heterosmilax japonica Kunth revealed by cultivation-independent approach. FEMS Microbiol Lett 249: 255-266.
13. Hino I & Katumoto K (1961) Icones Fungorum Bambusicolorum Japonicorum. The Fuji bamboo garden, Gotenba, Japan.
14. Hyde KD, Zhou D & Dalisay TE (2002) Bambusicolous fungi: a review. Fungal Divers 9: 1-14.
15. Ju YM, Rogers JD, Martin FS & Granmo A (1998) The genus Biscogniauxia. Mycotaxon 66: 1-98.
16. Kishi T, Tahara S, Taniguchi N, Tsuda M, Tanaka C & Takahashi S (1991) New perylenequinones from Shiraia bambusicola. Planta Med 57: 376-379.
17. Kumar S, Tamura K & Nei M(2004) MEGA3: integrated software for molecular evolutionary genetic analysis and sequence alignment. Brief in Bioinform 5: 150-163.
18. Lodge DJ, Fisher PJ & Sutton BC (1996) Endophytic fungi of Manilkara bidentata leaves in Puerto Rico. Mycologia 88: 733-792.
19. Mahuku GS, Hsiang T & Yang L (1998) Genetic diversity of Microdochium nivale isolates from turfgrass. Mycol Res 102: 559-567.
20. Marshall D, Tunali B & Nelson LR (1999) Occurrence of fungal endophytes in species of wild Triticum. Crop Sci 39: 1507-1512.
21. Nei M & Kumar S (2000) Molecular Evolution and Phylogenetics. Oxford University Press, NY.
22. O'Donnell K, Cigelnik E & Nirenberg HI (1998) Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia 90: 465-593.
23. Ortiz-Garcia S, Gernandt DS, Stone JK, Johnston PR, Chapela IH, Salas-Lizana R & Alzarez-Buylla ER (2003) Phylogenetics of Lophodermium from pine. Mycologia 95: 846-859.
24. Perfect SE, Hughes HB, O'Connell RJ & Green JR (1999) Colletotrichum: a model genus for studies on pathology and fungal-plant interactions. Fungal Genet Biol 27: 186-198.
25. Petrini O (1991) Fungal endophytes of tree leaves. Microbial Ecology of leaves (Andrews JH & Hirano SS, eds), pp. 179-197. Springer-Verlag, NY.
26. Rubini MR, Silva-Ribeiro RT, Pomella AWV, Maki CS, Araujo WL, Santos DRd & Azevedo JL (2005) Diversity of endophytic fungal community of cacao (Theobroma cacao L.) and biological control of Crinipellis perniciosa, causal agent of Witches' broom disease. Int J Biol Sci 1: 24-33.
27. Saikkonen K, Faeth SH, Helander M & Sullivan TJ (1998) Fungal Endophytes: a continuum of interactions with host plants. Annu Rev Ecol Syst 29: 319-343.
28. Samuels GJ, McKenzie EHC & Buchanan DE (1981) Ascomycetes of New Zealand two new species of Apiospora and their Arthrinium anamorphs on bamboo. N Z J Bot 19: 137-149.
29. Stone JK, Bacon CW & White JF Jr (2000) An overview of endophytic microbes: endophytism defined. Microbial Endophytes (Bacon CW & White JF Jr, eds), pp. 3-29. Marcel Dekker, NY.
30. Strobel GA (2002) Microbial gifts from rain forests. Can J Plant Pathol 24: 14-20.
31. Tan RX & Zou WX (2001) Endophytes: a rich source of functional metabolites. Nat Prod Rep 18: 448-459.
32. Tanaka K & Harada Y (2004) Bambusicolous fungi in Japan (1): four Phaeosphaeria species. Mycoscience 45: 377-382.
33. Tanaka E, Tanaka C, Gafur A &Tsuda M (2002) Heteroepichloë, gen. nov. (Clavicipitaceae; Ascomycotina) on bamboo plants in East Asia. Mycoscience 43: 87-93.
34. Taylor JE, Hyde KD & Jones EBG (2000) The biogeographical distribution of microfungi associated with three palm species from tropical and temperate habitats. J Biogeography 27: 297-310.
35. Wang HX & Ng TB (2003) Dendrocin, a distinctive antifungal protein from bamboo shoots. Biochem Biophy Res Commn 307: 750-755.
36. Whalley AJ (1996) The xylariaceaous way of life. Mycol Res 100: 897-922.
37. White TJ, Brun TLS & Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications (Innis MA, Gelfand DH, Sninsky JJ & White TJ, eds), pp. 315-322. Academic Press, NY.
38. Wirsel SGR, Leibinger W, Ernst M & Mendgen K (2001) Genetic diversity of fungi closely associated with common reed. New Phytol 149: 589-598.
39. Yamada Y, Kawasaki H, Nagatsuka Y, Mikata K & Seki T (1999) The phylogeny of the cactophilic yeasts based on the 18s ribosomal RNA gene sequences: the proposal of Phaffomyces antillensis and Starmera caribaea, new combinations. Biosci Biotechnol Biochem 63: 827-832.