-
1
-
-
34047243852
-
On the origin of the histone fold
-
doi: 10.1186/1472-6807-7-17
-
Alva, V., Ammelburg, M., Soding, J., and Lupas, A.N. 2007. On the origin of the histone fold. BMC Struct. Biol. 7: 17. doi: 10.1186/1472-6807-7-17.
-
(2007)
BMC Struct. Biol
, vol.7
, pp. 17
-
-
Alva, V.1
Ammelburg, M.2
Soding, J.3
Lupas, A.N.4
-
2
-
-
0028867087
-
The histone fold: A ubiquitous architectural motif utilized in DNA compaction and protein dimerization
-
Arents, G. and Moudrianakis, E.N. 1995. The histone fold: A ubiquitous architectural motif utilized in DNA compaction and protein dimerization. Proc. Natl. Acad. Sci. 92: 11170-11174.
-
(1995)
Proc. Natl. Acad. Sci
, vol.92
, pp. 11170-11174
-
-
Arents, G.1
Moudrianakis, E.N.2
-
3
-
-
0038661090
-
Equilibrium folding of the core histones: The H3-H4 tetramer is less stable than the H2A-H2B dimer
-
Banks, D.D. and Gloss, L.M. 2003. Equilibrium folding of the core histones: The H3-H4 tetramer is less stable than the H2A-H2B dimer. Biochemistry 42: 6827-6839.
-
(2003)
Biochemistry
, vol.42
, pp. 6827-6839
-
-
Banks, D.D.1
Gloss, L.M.2
-
4
-
-
1942537192
-
Folding mechanism of the (H3-H4)2 histone tetramer of the core nucleosome
-
Banks, D.D. and Gloss, L.M. 2004. Folding mechanism of the (H3-H4)2 histone tetramer of the core nucleosome. Protein Sci. 13: 1304-1316.
-
(2004)
Protein Sci
, vol.13
, pp. 1304-1316
-
-
Banks, D.D.1
Gloss, L.M.2
-
5
-
-
0026719686
-
Global analysis of biochemical and biophysical data
-
Beechem, J.M. 1992. Global analysis of biochemical and biophysical data. Methods Enzymol. 210: 37-54.
-
(1992)
Methods Enzymol
, vol.210
, pp. 37-54
-
-
Beechem, J.M.1
-
6
-
-
0034644722
-
Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus
-
Decanniere, K., Babu, A.M., Sandman, K., Reeve, J.N., and Heinemann, U. 2000. Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus. J. Mol. Biol. 303: 35-47.
-
(2000)
J. Mol. Biol
, vol.303
, pp. 35-47
-
-
Decanniere, K.1
Babu, A.M.2
Sandman, K.3
Reeve, J.N.4
Heinemann, U.5
-
8
-
-
0031932169
-
Protein aggregation: Folding aggregates, inclusion bodies and amyloid
-
Fink, A.L. 1998. Protein aggregation: Folding aggregates, inclusion bodies and amyloid. Fold. Des. 3: R9-23.
-
(1998)
Fold. Des
, vol.3
-
-
Fink, A.L.1
-
9
-
-
4143061715
-
Switching two-state to three-state kinetics in the helical protein Im9 via the optimisation of stabilising nonnative interactions by design
-
Friel, C.T., Beddard, G.S., and Radford, S.E. 2004. Switching two-state to three-state kinetics in the helical protein Im9 via the optimisation of stabilising nonnative interactions by design. J. Mol. Biol. 342: 261-273.
-
(2004)
J. Mol. Biol
, vol.342
, pp. 261-273
-
-
Friel, C.T.1
Beddard, G.S.2
Radford, S.E.3
-
10
-
-
33846090298
-
Tying the knot that binds
-
Gloss, L.M. 2007. Tying the knot that binds. Structure 15: 2-4.
-
(2007)
Structure
, vol.15
, pp. 2-4
-
-
Gloss, L.M.1
-
11
-
-
0030925611
-
Urea and thermal equilibrium denaturation studies on the dimerization domain of Escherichia coli Trp repressor
-
Gloss, L.M. and Matthews, C.R. 1997. Urea and thermal equilibrium denaturation studies on the dimerization domain of Escherichia coli Trp repressor. Biochemistry 36: 5612-5623.
-
(1997)
Biochemistry
, vol.36
, pp. 5612-5623
-
-
Gloss, L.M.1
Matthews, C.R.2
-
12
-
-
0032506169
-
The barriers in the biomolecular and unimolecular folding reaction of the dimeric core domain of Escherichia coli Trp repressor are dominated by enthalpic contributions
-
Gloss, L.M. and Matthews, C.R. 1998. The barriers in the biomolecular and unimolecular folding reaction of the dimeric core domain of Escherichia coli Trp repressor are dominated by enthalpic contributions. Biochemistry 37: 16000-16010.
-
(1998)
Biochemistry
, vol.37
, pp. 16000-16010
-
-
Gloss, L.M.1
Matthews, C.R.2
-
13
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho, S.N., Hunt, H.D., Horton, R.M., Pullen, J.K., and Pease, L.R. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77: 51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
14
-
-
0037137182
-
From two-state to three-state: The effect of the P61A mutation on the dynamics and stability of the Factor for Inversion Stimulation in an altered equilibrium denaturation mechanism
-
Hobart, S.A., Meinhold, D.W., Osuna, R., and Colon, W. 2002. From two-state to three-state: The effect of the P61A mutation on the dynamics and stability of the Factor for Inversion Stimulation in an altered equilibrium denaturation mechanism. Biochemistry 41: 13744-13754.
-
(2002)
Biochemistry
, vol.41
, pp. 13744-13754
-
-
Hobart, S.A.1
Meinhold, D.W.2
Osuna, R.3
Colon, W.4
-
15
-
-
0031815749
-
How do small single-domain proteins fold?
-
Jackson, S.E. 1998. How do small single-domain proteins fold? Fold. Des. 3: R81-R91.
-
(1998)
Fold. Des
, vol.3
-
-
Jackson, S.E.1
-
16
-
-
0034581324
-
Folding and association of oligomeric and multimeric proteins
-
Jaenicke, R. and Lilie, H. 2000. Folding and association of oligomeric and multimeric proteins. Adv. Protein Chem. 53: 329-401.
-
(2000)
Adv. Protein Chem
, vol.53
, pp. 329-401
-
-
Jaenicke, R.1
Lilie, H.2
-
17
-
-
0026005997
-
Transient intermediates in the folding of dihydrofolate reductase as detected by far-ultraviolet circular dichroism spectroscopy
-
Kuwajima, K., Garvey, E.P., Finn, B.E., Matthews, C.R., and Sugai, S. 1991. Transient intermediates in the folding of dihydrofolate reductase as detected by far-ultraviolet circular dichroism spectroscopy. Biochemistry 30: 7693-7703.
-
(1991)
Biochemistry
, vol.30
, pp. 7693-7703
-
-
Kuwajima, K.1
Garvey, E.P.2
Finn, B.E.3
Matthews, C.R.4
Sugai, S.5
-
18
-
-
0032575295
-
Thermodynamic stability of archaeal histones
-
Li, W., Grayling, R.A., Sandman, K., Edmondson, S., Shriver, J.W., and Reeve, J.N. 1998. Thermodynamic stability of archaeal histones. Biochemistry 37: 10563-10572.
-
(1998)
Biochemistry
, vol.37
, pp. 10563-10572
-
-
Li, W.1
Grayling, R.A.2
Sandman, K.3
Edmondson, S.4
Shriver, J.W.5
Reeve, J.N.6
-
19
-
-
0033972056
-
Mutational analysis of differences in thermostability between histones from mesophilic and hyperthermophilic archae
-
Li, W.-T., Shriver, J.W., and Reeve, J.N. 2000. Mutational analysis of differences in thermostability between histones from mesophilic and hyperthermophilic archae. J. Bacteriol. 182: 812-817.
-
(2000)
J. Bacteriol
, vol.182
, pp. 812-817
-
-
Li, W.-T.1
Shriver, J.W.2
Reeve, J.N.3
-
20
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
Liu, Y. and Eisenberg, D. 2002. 3D domain swapping: As domains continue to swap. Protein Sci. 11: 1285-1299.
-
(2002)
Protein Sci
, vol.11
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
21
-
-
33644625997
-
Dynamic nucleosomes
-
Luger, K. 2006. Dynamic nucleosomes. Chromosome Res. 14: 5-16.
-
(2006)
Chromosome Res
, vol.14
, pp. 5-16
-
-
Luger, K.1
-
22
-
-
0037215268
-
The topomer search model: A simple, quantitative theory of two-state protein folding kinetics
-
Makarov, D.E. and Plaxco, K.W. 2003. The topomer search model: A simple, quantitative theory of two-state protein folding kinetics. Protein Sci. 12: 17-26.
-
(2003)
Protein Sci
, vol.12
, pp. 17-26
-
-
Makarov, D.E.1
Plaxco, K.W.2
-
23
-
-
20044363782
-
Protein folding: Defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins
-
Maxwell, K.L., Wildes, D., Zarrine-Afsar, A., De Los Rios, M.A., Brown, A.G., Friel, C.T., Hedberg, L., Horng, J.C., Bona, D., Miller, E.J., et al. 2005. Protein folding: Defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci. 14: 602-616.
-
(2005)
Protein Sci
, vol.14
, pp. 602-616
-
-
Maxwell, K.L.1
Wildes, D.2
Zarrine-Afsar, A.3
De Los Rios, M.A.4
Brown, A.G.5
Friel, C.T.6
Hedberg, L.7
Horng, J.C.8
Bona, D.9
Miller, E.J.10
-
24
-
-
0028176281
-
Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect
-
Munoz, V., Lopez, E.M., Jager, M., and Serrano, L. 1994. Kinetic characterization of the chemotactic protein from Escherichia coli, CheY. Kinetic analysis of the inverse hydrophobic effect. Biochemistry 33: 5858-5866.
-
(1994)
Biochemistry
, vol.33
, pp. 5858-5866
-
-
Munoz, V.1
Lopez, E.M.2
Jager, M.3
Serrano, L.4
-
25
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessble surface areas of protein folding
-
Myers, J.K., Pace, C.N., and Scholtz, J.M. 1995. Denaturant m values and heat capacity changes: Relation to changes in accessble surface areas of protein folding. Protein Sci. 4: 2138-2148.
-
(1995)
Protein Sci
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
27
-
-
0002343673
-
Measuring the conformational stability of a protein
-
ed. T.E. Creighton, pp, IRL Press, New York
-
Pace, C.N., Shirley, B.A., and Thomson, J.A. 1990. Measuring the conformational stability of a protein. In Protein structure: A practical approach (ed. T.E. Creighton), pp. 311-330. IRL Press, New York.
-
(1990)
Protein structure: A practical approach
, pp. 311-330
-
-
Pace, C.N.1
Shirley, B.A.2
Thomson, J.A.3
-
28
-
-
0032144071
-
Histones and nucleosomes in Archaea and Eukarya: A comparative analysis
-
Pereira, S.L. and Reeve, J.N. 1998. Histones and nucleosomes in Archaea and Eukarya: A comparative analysis. Extremophiles 2: 141-148.
-
(1998)
Extremophiles
, vol.2
, pp. 141-148
-
-
Pereira, S.L.1
Reeve, J.N.2
-
29
-
-
10044293974
-
Three-state kinetic folding mechanism of the H2A/H2B histone heterodimer: The N-terminal tails affect the transition state between a dimeric intermediate and the native dimer
-
Placek, B.J. and Gloss, L.M. 2005. Three-state kinetic folding mechanism of the H2A/H2B histone heterodimer: The N-terminal tails affect the transition state between a dimeric intermediate and the native dimer. J. Mol. Biol. 345: 827-836.
-
(2005)
J. Mol. Biol
, vol.345
, pp. 827-836
-
-
Placek, B.J.1
Gloss, L.M.2
-
30
-
-
33947409120
-
Structural characterization of the partially folded intermediates of an immunoglobulin light chain leading to amyloid fibrillation and amorphous aggregation
-
Qin, Z., Hu, D., Zhu, M., and Fink, A.L. 2007. Structural characterization of the partially folded intermediates of an immunoglobulin light chain leading to amyloid fibrillation and amorphous aggregation. Biochemistry 46: 3521-3531.
-
(2007)
Biochemistry
, vol.46
, pp. 3521-3531
-
-
Qin, Z.1
Hu, D.2
Zhu, M.3
Fink, A.L.4
-
31
-
-
0026754044
-
A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range
-
Santoro, M.M. and Bolen, D.W. 1992. A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range. Biochemistry 31: 4901-4907.
-
(1992)
Biochemistry
, vol.31
, pp. 4901-4907
-
-
Santoro, M.M.1
Bolen, D.W.2
-
32
-
-
0030770294
-
Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly
-
Schlunegger, M.P., Bennett, M.J., and Eisenberg, D. 1997. Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly. Adv. Protein Chem. 50: 61-122.
-
(1997)
Adv. Protein Chem
, vol.50
, pp. 61-122
-
-
Schlunegger, M.P.1
Bennett, M.J.2
Eisenberg, D.3
-
33
-
-
0035037143
-
A proposed structural model for amyloid fibril elongation: Domain swapping forms an interdigitating β-structure polymer
-
Sinha, N., Tsai, C.J., and Nussinov, R. 2001. A proposed structural model for amyloid fibril elongation: Domain swapping forms an interdigitating β-structure polymer. Protein Eng. 14: 93-103.
-
(2001)
Protein Eng
, vol.14
, pp. 93-103
-
-
Sinha, N.1
Tsai, C.J.2
Nussinov, R.3
-
34
-
-
0029940033
-
Molecular collapse: The rate-limiting step in two-state cytochrome c folding
-
Sosnick, T.R., Mayne, L., and Englander, S.W. 1996. Molecular collapse: The rate-limiting step in two-state cytochrome c folding. Proteins 24: 413-426.
-
(1996)
Proteins
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
35
-
-
0034718450
-
A change in the apparent m value reveals a populated intermediate under equilibrium conditions in Escherichia coli ribonuclease HI
-
Spudich, G. and Marqusee, S. 2000. A change in the apparent m value reveals a populated intermediate under equilibrium conditions in Escherichia coli ribonuclease HI. Biochemistry 39: 11677-11683.
-
(2000)
Biochemistry
, vol.39
, pp. 11677-11683
-
-
Spudich, G.1
Marqusee, S.2
-
36
-
-
0347627528
-
Destabilization of the Escherichia coli RNase H kinetic intermediate: Switching between a two-state and three-state folding mechanism
-
Spudich, G.M., Miller, E.J., and Marqusee, S. 2004. Destabilization of the Escherichia coli RNase H kinetic intermediate: Switching between a two-state and three-state folding mechanism. J. Mol. Biol. 335: 609-618.
-
(2004)
J. Mol. Biol
, vol.335
, pp. 609-618
-
-
Spudich, G.M.1
Miller, E.J.2
Marqusee, S.3
-
37
-
-
0029924193
-
NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this Archaeal protein is a histone
-
Starich, M.R., Sandman, K., Reeve, J.N., and Summers, M.F. 1996. NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this Archaeal protein is a histone. J. Mol. Biol. 255: 187-203.
-
(1996)
J. Mol. Biol
, vol.255
, pp. 187-203
-
-
Starich, M.R.1
Sandman, K.2
Reeve, J.N.3
Summers, M.F.4
-
38
-
-
0036081255
-
The Histone Database
-
Sullivan, S., Sink, D.W., Trout, K.L., Makalowska, I., Taylor, P.M., Baxevanis, A.D., and Landsman, D. 2002. The Histone Database. Nucleic Acids Res. 30: 341-342.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 341-342
-
-
Sullivan, S.1
Sink, D.W.2
Trout, K.L.3
Makalowska, I.4
Taylor, P.M.5
Baxevanis, A.D.6
Landsman, D.7
-
39
-
-
4143135385
-
Stability and folding mechanism of mesophilic, thermophilic and hyperthermophilic archael histones: The importance of folding intermediates
-
Topping, T.B. and Gloss, L.M. 2004. Stability and folding mechanism of mesophilic, thermophilic and hyperthermophilic archael histones: The importance of folding intermediates. J. Mol. Biol. 342: 247-260.
-
(2004)
J. Mol. Biol
, vol.342
, pp. 247-260
-
-
Topping, T.B.1
Gloss, L.M.2
-
40
-
-
0031707751
-
Alteration of nucleosome structure as a mechanism of transcriptional regulation
-
Workman, J.L. and Kingston, R.E. 1998. Alteration of nucleosome structure as a mechanism of transcriptional regulation. Annu. Rev. Biochem. 67: 545-579.
-
(1998)
Annu. Rev. Biochem
, vol.67
, pp. 545-579
-
-
Workman, J.L.1
Kingston, R.E.2
-
41
-
-
0028783624
-
Probing the folding mechanism of a leucine zipper peptide by stopped-flow circular dichroism spectroscopy
-
Zitzewitz, J.A., Bilsel, O., Luo, J., Jones, B.E., and Matthews, C.R. 1995. Probing the folding mechanism of a leucine zipper peptide by stopped-flow circular dichroism spectroscopy. Biochemistry 34: 12812-12819.
-
(1995)
Biochemistry
, vol.34
, pp. 12812-12819
-
-
Zitzewitz, J.A.1
Bilsel, O.2
Luo, J.3
Jones, B.E.4
Matthews, C.R.5
|