tRNA-dependent asparagine formation in prokaryotes: Characterization, isolation and structural and functional analysis of a ribonucleoprotein particle generating Asn-tRNAAsn

Methods

Volumn 44, Issue 2, 2008, Pages 146-163

  Bailly, Marc ^a   Blaise, Mickaël ^a   Roy, Hervé ^a   Deniziak, Marzanna ^a   Lorber, Bernard ^a   Birck, Catherine ^b   Becker, Hubert D ^a   Kern, Daniel ^a  

^a INST DE BIOL MOLEC ET CELLULAIRE   (France)

^b INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

Indirect aa tRNA formation; Non discriminating aspartyl tRNA synthetase; Ribonucleoprotein complex; Thermus thermophilus; tRNA aminoacylation; tRNA dependent amidotransferase; tRNA dependent asparagine synthesis

Indexed keywords

ASPARAGINE; ASPARAGINE TRANSFER RNA; HAMMERHEAD RIBOZYME; RIBONUCLEOPROTEIN; TRANSFER RNA;

ARTICLE; CATALYSIS; COMPLEX FORMATION; CRYSTALLIZATION; ESCHERICHIA COLI; GENE EXPRESSION; GENOME; MOLECULAR CLONING; OPEN READING FRAME; OPERON; PRIORITY JOURNAL; PROKARYOTE; RNA ISOLATION; RNA TRANSCRIPTION;

ASPARAGINE; CRYSTALLIZATION; LIGHT; NITROGENOUS GROUP TRANSFERASES; PROKARYOTIC CELLS; RIBONUCLEOPROTEINS; RNA, TRANSFER, ASN; SCATTERING, RADIATION; TRANSFER RNA AMINOACYLATION; ULTRACENTRIFUGATION;

ESCHERICHIA COLI; PROKARYOTA; THERMUS THERMOPHILUS;

EID: 38649105167     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2007.11.012     Document Type: Article

References (42)

1. Schimmel P., and Söll D. Annu. Rev. Biochem. 48 (1979) 601-648
2. Lapointe J., and Giegé R. In: Trachsel H. (Ed). Translation in Eukaryotes (1991), CRC Press, Inc., Boca Raton, USA 35-69
3. Ibba M., and Söll D. Genes Dev. 18 (2004) 731-738
4. Wilcox M., and Nirenberg M. Proc. Natl. Acad. Sci. USA 61 (1968) 229-236
5. Wilcox M. Eur. J. Biochem. 11 (1969) 405-412
6. Gagnon Y., Lacoste L., Champagne L., and Lapointe J. Biol. Chem. 271 (1996) 14856-14863
7. Curnow A.W., Hong K.W., Yuan R., Kim S.I., Martins O., Winkler W., Henkin T.M., and Söll D. Proc. Natl. Acad. Sci. USA 94 (1997) 11819-11826
8. L. Feng, D. Tumbula-Hansen, B. Min, S. Namgoong, J. Salazar, O. Orellana, D. Söll, in: M. Ibba, C. Francklyn, S. Cuzak (Eds.), The Aminoacyl-tRNA Synthetases, Landes Biosciences, Georgetown, TX, 2005, pp. 314-318.
9. Schön A., Kannangara G., Gough S., and Söll D. Nature 331 (1988) 187-190
10. Curnow A.W., Ibba M., and Söll D. Nature 382 (1996) 589-590
11. Becker H.D., and Kern D. Proc. Natl. Acad. Sci. USA 95 (1998) 12832-12837
12. Curnow A.W., Tumbula D.L., Pelachier J.T., Min B., and Söll D. Proc. Natl. Acad. Sci. USA 95 (1998) 12838-12843
13. D. Kern, H. Roy, H.D. Becker, in: M. Ibba, C. Francklyn, S. Cuzak (Eds.), The Aminoacyl-tRNA Synthetases, Landes Biosciences, Georgetown, TX (2005) pp. 193-205.
14. A. Böck, M. Thanbichler, M. Rother, A. Resch, in: M. Ibba, C.S. Francklyn, S. Cusack (Eds.), The Aminoacyl-tRNA Synthetases, Landes Bioscience, Georgetown, TX, 2005, pp. 320-328.
15. Sauerwald A., Zhu W., Major T.A., Palioura S., Jahn D., Whitman W.B., Yates III J.R., Ibba M., and Söll D. Science 307 (2005) 1969-1972
16. Becker H.D., Min B., Jacobi C., Raczniak G., Roy H., Klein S., Kern D., and Söll D. FEBS Lett. 476 (2000) 140-144
17. Tumbula D.L., Becker H.D., Chang W.Z., and Söll D. Nature 407 (2000) 106-110
18. Bailly M., Blaise M., Lorber B., Becker H.D., and Kern D. Mol. Cell 28 (2007) 228-239
19. Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alkloni G., and Azevedo V. Nature 390 (1997) 248-256
20. Horiuchi K.Y., Harpel M.R., Shen L., Luo Y., Rogers K.C., and Copeland R.A. Biochemistry 40 (2001) 6450-6457
21. Salazar J.C., Zuniga R., Raczniak G., Becker H.D., Söll D., and Orellana O. FEBS Lett. 500 (2001) 129-131
22. Raczniak G., Becker H.D., Min B., and Söll D. J. Biol. Chem. 276 (2001) 45862-45867
23. Nakamura A., Yao M., Chimnaronk S., Sakai N., and Tanaka I. Science 312 (2006) 1954-1958
24. Nolling J., Breton G., Omelchenko M.V., Makaroiva M.S., Zeng Q., et al. J. Bacteriol. 183 (2001) 4823-4838
25. Chuawong P., and Hendrickson T.L. Biochemistry 45 (2006) 8079-8087
26. Sheppart K., Akochy P.-M., Salazar J.C., and Söll D. J. Biol. Chem. 282 (2007) 11866-11873
27. Henne A., Brüggemenn H., Raasch C., Wiezer A., Hartsch T., and Liesegang H. Nat. Biotechnol. 22 (2004) 547-553
28. Becker H.D., Reinbolt J., Kreutzer R., Giegé R., and Kern D. Biochemistry 36 (1997) 8785-8797
29. Becker H.D., Roy H., Moulinier L., Mazauric M.-H., Keith G., and Kern D. Biochemistry 39 (2000) 3216-3230
30. J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, 1989.
31. Becker H.D., Giegé R., and Kern D. Biochemistry 35 (1996) 7447-7458
32. H. Roy, Thèse de l'Université Louis Pasteur, Strasbourg, 2002.
33. Almassy R.J., Janson C.A., Hamlin R., Xuong N.H., and Eisenberg D. Nature 323 (1986) 304-309
34. Roy H., Becker H.D., Reinbolt J., and Kern D. Proc. Natl. Acad. Sci. USA 100 (2003) 9837-9842
35. Harpel M.R., Horiuchi K.Y., Luo Y., Shen L., Jiang W., Nelson D.J., Kelley C.R., Decicco C.P., and Copeland A. Biochemistry 41 (2002) 6398-6407
36. Jancarik J., and Kim S.-H. J. Appl. Cryst. 24 (1991) 409-411
37. Charron C., Roy H., Lorber B., Kern D., and Giegé R. Acta Cryst. D57 (2001) 1177-1179
38. Charron C., Roy H., Blaise M., Giegé R., and Kern D. EMBO J. 22 (2003) 1632-1643
39. Roy H., Becker H.D., Mazauric M.-H., and Kern D. Nucleic Acids Res. 35 (2007) 3420-3430
40. Baick J.-W., Yoon J.-H., Namgoong S.D., Söll D., Kim S.-I., Eom S.-H., and Hong K.-W. J. Microbiol. 42 (2004) 111-116
41. Stanzel M., Schön A., and Sprinzl M. Eur. J. Biochem. 219 (1994) 435-439
42. Huot J.L., Balg C., Jahn D., Moser J., Émond A., Blais S.P., Chênevert R., and Lapointe J. Biochemistry 46 (2007) 13190-13198