메뉴 건너뛰기




Volumn 367, Issue 3, 2008, Pages 542-545

GC level and expression of human coding sequences

Author keywords

Expression; GC level; Vector plasmids

Indexed keywords

PLASMID VECTOR;

EID: 38649087343     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2007.12.155     Document Type: Article
Times cited : (20)

References (30)
  • 3
    • 34347222211 scopus 로고    scopus 로고
    • The neoselectionist theory of genome evolution
    • Bernardi G. The neoselectionist theory of genome evolution. Proc. Natl. Acad. Sci. USA 104 (2007) 8385-8390
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 8385-8390
    • Bernardi, G.1
  • 6
    • 0030603239 scopus 로고    scopus 로고
    • The gene distribution of the human genome
    • Zoubak S., Clay O., and Bernardi G. The gene distribution of the human genome. Gene 174 (1996) 95-102
    • (1996) Gene , vol.174 , pp. 95-102
    • Zoubak, S.1    Clay, O.2    Bernardi, G.3
  • 7
    • 0027395841 scopus 로고
    • The vertebrate genome: isochores and evolution
    • Bernardi G. The vertebrate genome: isochores and evolution. Mol. Biol. Evol. 10 (1993) 186-204
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 186-204
    • Bernardi, G.1
  • 8
    • 0036133146 scopus 로고    scopus 로고
    • Correlations between mRNA expression levels and GC contents of coding and untranslated regions of genes in rodents
    • Konu O., and Li M.D. Correlations between mRNA expression levels and GC contents of coding and untranslated regions of genes in rodents. J. Mol. Evol. 54 (2002) 35-41
    • (2002) J. Mol. Evol. , vol.54 , pp. 35-41
    • Konu, O.1    Li, M.D.2
  • 9
    • 0036889468 scopus 로고    scopus 로고
    • Evolution of synonymous codon usage in metazoans
    • Duret L. Evolution of synonymous codon usage in metazoans. Curr. Opin. Genet. Dev. 12 (2002) 640-649
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 640-649
    • Duret, L.1
  • 10
    • 0141854009 scopus 로고    scopus 로고
    • The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes
    • Versteeg R., vanSchaik B.D., vanBatenburg M.F., Roos M., Monajemi R., Caron H., Bussemaker H.J., and van Kampen A.H. The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes. Genome Res. 13 (2003) 1998-2004
    • (2003) Genome Res. , vol.13 , pp. 1998-2004
    • Versteeg, R.1    vanSchaik, B.D.2    vanBatenburg, M.F.3    Roos, M.4    Monajemi, R.5    Caron, H.6    Bussemaker, H.J.7    van Kampen, A.H.8
  • 11
    • 0345411919 scopus 로고    scopus 로고
    • Isochores and tissue-specificity
    • Vinogradov A.E. Isochores and tissue-specificity. Nucleic Acids Res. 31 (2003) 5212-5220
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5212-5220
    • Vinogradov, A.E.1
  • 12
    • 27744469993 scopus 로고    scopus 로고
    • Dualism and GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth
    • Vinogradov A.E. Dualism and GC content and CpG pattern in regard to expression in the human genome: magnitude versus breadth. Trends Genet. 21 (2005) 639-643
    • (2005) Trends Genet. , vol.21 , pp. 639-643
    • Vinogradov, A.E.1
  • 13
    • 3843068862 scopus 로고    scopus 로고
    • Selective and mutational patterns associated with gene expression in humans: influences of synonymous composition and introns
    • Comeron J.M. Selective and mutational patterns associated with gene expression in humans: influences of synonymous composition and introns. Genetics 167 (2004) 1293-1304
    • (2004) Genetics , vol.167 , pp. 1293-1304
    • Comeron, J.M.1
  • 14
    • 13544254591 scopus 로고    scopus 로고
    • Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance
    • Semon M., Mouchiroud D., and Duret L. Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance. Hum. Mol. Genet. 14 (2005) 421-427
    • (2005) Hum. Mol. Genet. , vol.14 , pp. 421-427
    • Semon, M.1    Mouchiroud, D.2    Duret, L.3
  • 15
    • 0346158512 scopus 로고    scopus 로고
    • Base composition and expression level of human genes
    • Arhondakis S., Auletta F., Torelli G., and D'Onofrio G. Base composition and expression level of human genes. Gene 325 (2004) 165-169
    • (2004) Gene , vol.325 , pp. 165-169
    • Arhondakis, S.1    Auletta, F.2    Torelli, G.3    D'Onofrio, G.4
  • 16
    • 33749350701 scopus 로고    scopus 로고
    • Compositional properties of human cDNA libraries: practical implications
    • Arhondakis S., Clay O., and Bernardi G. Compositional properties of human cDNA libraries: practical implications. FEBS Lett. 580 (2006) 5772-5778
    • (2006) FEBS Lett. , vol.580 , pp. 5772-5778
    • Arhondakis, S.1    Clay, O.2    Bernardi, G.3
  • 17
    • 33745198703 scopus 로고    scopus 로고
    • High guanine and cytosine content increases mRNA levels in mammalian cells
    • Kudla G., Lipinski L., Caffin F., Helwak A., and Zylicz M. High guanine and cytosine content increases mRNA levels in mammalian cells. PLoS Biol. 4 (2006) e180
    • (2006) PLoS Biol. , vol.4
    • Kudla, G.1    Lipinski, L.2    Caffin, F.3    Helwak, A.4    Zylicz, M.5
  • 18
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European molecular biology open software suite
    • Rice P., Longden I., and Bleasby A. EMBOSS: the European molecular biology open software suite. Trends Genet. 16 (2000) 276-277
    • (2000) Trends Genet. , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 20
    • 0032487749 scopus 로고    scopus 로고
    • The regional integration of retroviral sequences into the mosaic genomes of mammals
    • Rynditch A.V., Zoubak S., Tsyba L., Tryapitsina-Guley N., and Bernardi G. The regional integration of retroviral sequences into the mosaic genomes of mammals. Gene 222 (1998) 1-16
    • (1998) Gene , vol.222 , pp. 1-16
    • Rynditch, A.V.1    Zoubak, S.2    Tsyba, L.3    Tryapitsina-Guley, N.4    Bernardi, G.5
  • 21
    • 0013410135 scopus 로고    scopus 로고
    • Mammalian genome organization and its implications for the development of gene therapy vectors
    • Zink D., Bolzer A., Mayr C., Hofmann W., Sadoni N., and Überla K. Mammalian genome organization and its implications for the development of gene therapy vectors. Gene Ther. Mol. Biol. 6 (2001) 1-24
    • (2001) Gene Ther. Mol. Biol. , vol.6 , pp. 1-24
    • Zink, D.1    Bolzer, A.2    Mayr, C.3    Hofmann, W.4    Sadoni, N.5    Überla, K.6
  • 22
    • 0037162715 scopus 로고    scopus 로고
    • HIV-1 integration in the human genome favors active genes and local hotspots
    • Schröder A.R., Shinn P., Chen H., Berry C., Ecker J.R., and Bushman F. HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110 (2002) 521-529
    • (2002) Cell , vol.110 , pp. 521-529
    • Schröder, A.R.1    Shinn, P.2    Chen, H.3    Berry, C.4    Ecker, J.R.5    Bushman, F.6
  • 23
    • 0037165617 scopus 로고    scopus 로고
    • Preferential integration of human immunodeficiency virus type 1 into genes, cytogenetic R bands and GC-rich DNA regions: insight from the human genome sequence
    • Elleder D., Pavlicek A., Paces J., and Hejnar J. Preferential integration of human immunodeficiency virus type 1 into genes, cytogenetic R bands and GC-rich DNA regions: insight from the human genome sequence. FEBS Lett. 517 (2002) 285-286
    • (2002) FEBS Lett. , vol.517 , pp. 285-286
    • Elleder, D.1    Pavlicek, A.2    Paces, J.3    Hejnar, J.4
  • 24
    • 38649112677 scopus 로고    scopus 로고
    • M. Costantini, G. Bernardi, Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes. Gene (in press).
  • 25
    • 0021443367 scopus 로고
    • Assembly of transfected DNA into chromatin: structural changes in the origin-promoter-enhancer region upon replication
    • Cereghini S., and Yaniv M. Assembly of transfected DNA into chromatin: structural changes in the origin-promoter-enhancer region upon replication. EMBO J. 3 (1984) 1243-1253
    • (1984) EMBO J. , vol.3 , pp. 1243-1253
    • Cereghini, S.1    Yaniv, M.2
  • 26
    • 0022431493 scopus 로고
    • Minichromosome assembly of non-integrated plasmid DNA transfected into mammalian cells
    • Reeves R., Gorman C.M., and Howard B. Minichromosome assembly of non-integrated plasmid DNA transfected into mammalian cells. Nucleic Acids Res. 13 (1985) 3599-3615
    • (1985) Nucleic Acids Res. , vol.13 , pp. 3599-3615
    • Reeves, R.1    Gorman, C.M.2    Howard, B.3
  • 27
    • 0028217604 scopus 로고
    • Micrococcal nuclease digestion of nuclei reveals extended nucleosome ladders having anomalous DNA lengths for chromatin assembled on non-replicating plasmids in transfected cells
    • Jeong S., and Stein A. Micrococcal nuclease digestion of nuclei reveals extended nucleosome ladders having anomalous DNA lengths for chromatin assembled on non-replicating plasmids in transfected cells. Nucleic Acids Res. 22 (1994) 370-375
    • (1994) Nucleic Acids Res. , vol.22 , pp. 370-375
    • Jeong, S.1    Stein, A.2
  • 28
    • 0033453222 scopus 로고    scopus 로고
    • Positional enhancer-blocking activity of the chicken beta-globin insulator in transiently transfected cells
    • Recillas-Targa F., Bell A.C., and Felsenfeld G. Positional enhancer-blocking activity of the chicken beta-globin insulator in transiently transfected cells. Proc. Natl. Acad. Sci USA 96 (1999) 14354-14359
    • (1999) Proc. Natl. Acad. Sci USA , vol.96 , pp. 14354-14359
    • Recillas-Targa, F.1    Bell, A.C.2    Felsenfeld, G.3
  • 29
    • 33846863764 scopus 로고    scopus 로고
    • Multiple strategies for gene transfer, expression, knockdown, and chromatin influence in mammalian cell lines and transgenic animals
    • Recillas-Targa F. Multiple strategies for gene transfer, expression, knockdown, and chromatin influence in mammalian cell lines and transgenic animals. Mol. Biotechnol. 34 (2006) 337-354
    • (2006) Mol. Biotechnol. , vol.34 , pp. 337-354
    • Recillas-Targa, F.1
  • 30
    • 84869204164 scopus 로고    scopus 로고
    • More GC Means More RNA
    • 10.1371/journal.pbio.0040206
    • Robinson R. More GC Means More RNA. PLoS Biol. 4 (2006) e206 10.1371/journal.pbio.0040206
    • (2006) PLoS Biol. , vol.4
    • Robinson, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.