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Volumn 389, Issue 1-2, 2008, Pages 146-151

TaqMan low density array is roughly right for gene expression quantification in colorectal cancer

Author keywords

Colorectal cancer; Concordance correlation coefficient (CCC); Low density array (LDA); Quantitative real time RT PCR (Q PCR)

Indexed keywords

MESSENGER RNA;

EID: 38649087335     PISSN: 00098981     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cca.2007.12.009     Document Type: Article
Times cited : (11)

References (27)
  • 1
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • Notterman D.A., Alon U., Sierk A.J., and Levine A.J. Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays. Cancer Res 61 (2001) 3124-3130
    • (2001) Cancer Res , vol.61 , pp. 3124-3130
    • Notterman, D.A.1    Alon, U.2    Sierk, A.J.3    Levine, A.J.4
  • 2
    • 0033886467 scopus 로고    scopus 로고
    • Cancer gene discovery using digital differential display
    • Scheurle D., De Young M.P., Binninger D.M., et al. Cancer gene discovery using digital differential display. Cancer Res 60 (2000) 4037-4043
    • (2000) Cancer Res , vol.60 , pp. 4037-4043
    • Scheurle, D.1    De Young, M.P.2    Binninger, D.M.3
  • 3
    • 15544381570 scopus 로고    scopus 로고
    • Self-renewal and cancer of the gut: two sides of a coin
    • Radtke F., and Clevers H. Self-renewal and cancer of the gut: two sides of a coin. Science 307 (2005) 1904-1909
    • (2005) Science , vol.307 , pp. 1904-1909
    • Radtke, F.1    Clevers, H.2
  • 4
    • 33750327219 scopus 로고    scopus 로고
    • Expression analyses of 27 DNA repair genes in astrocytoma by TaqMan low-density array
    • Jiang Z., Hu J., Li X., et al. Expression analyses of 27 DNA repair genes in astrocytoma by TaqMan low-density array. Neurosci Lett 409 (2006) 112-117
    • (2006) Neurosci Lett , vol.409 , pp. 112-117
    • Jiang, Z.1    Hu, J.2    Li, X.3
  • 5
    • 33646437227 scopus 로고    scopus 로고
    • Identification of a set of seven genes for the monitoring of minimal residual disease in pediatric acute myeloid leukemia
    • Steinbach D., Schramm A., Eggert A., et al. Identification of a set of seven genes for the monitoring of minimal residual disease in pediatric acute myeloid leukemia. Clin Cancer Res 12 (2006) 2434-2441
    • (2006) Clin Cancer Res , vol.12 , pp. 2434-2441
    • Steinbach, D.1    Schramm, A.2    Eggert, A.3
  • 6
    • 31844437448 scopus 로고    scopus 로고
    • Human ATP-binding cassette transporter TaqMan low-density array: analysis of macrophage differentiation and foam cell formation
    • Langmann T., Mauerer R., and Schmitz G. Human ATP-binding cassette transporter TaqMan low-density array: analysis of macrophage differentiation and foam cell formation. Clin Chem 52 (2006) 310-313
    • (2006) Clin Chem , vol.52 , pp. 310-313
    • Langmann, T.1    Mauerer, R.2    Schmitz, G.3
  • 7
    • 32944472275 scopus 로고    scopus 로고
    • Multiple gene expression analyses in paraffin-embedded tissues by TaqMan low-density array: application to hedgehog and Wnt pathway analysis in ovarian endometrioid adenocarcinoma
    • Steg A., Wang W., Blanquicett C., et al. Multiple gene expression analyses in paraffin-embedded tissues by TaqMan low-density array: application to hedgehog and Wnt pathway analysis in ovarian endometrioid adenocarcinoma. J Mol Diagn 8 (2006) 76-83
    • (2006) J Mol Diagn , vol.8 , pp. 76-83
    • Steg, A.1    Wang, W.2    Blanquicett, C.3
  • 8
    • 27744548525 scopus 로고    scopus 로고
    • Multiple markers for melanoma progression regulated by DNA methylation: insights from transcriptomic studies
    • Gallagher W.M., Bergin O.E., Rafferty M., et al. Multiple markers for melanoma progression regulated by DNA methylation: insights from transcriptomic studies. Carcinogenesis 26 (2005) 1856-1867
    • (2005) Carcinogenesis , vol.26 , pp. 1856-1867
    • Gallagher, W.M.1    Bergin, O.E.2    Rafferty, M.3
  • 9
    • 18444417714 scopus 로고    scopus 로고
    • Validation of oligonucleotide microarray data using microfluidic low-density arrays: a new statistical method to normalize real-time RT-PCR data
    • Abruzzo L.V., Lee K.Y., Fuller A., et al. Validation of oligonucleotide microarray data using microfluidic low-density arrays: a new statistical method to normalize real-time RT-PCR data. Biotechniques 38 (2005) 785-792
    • (2005) Biotechniques , vol.38 , pp. 785-792
    • Abruzzo, L.V.1    Lee, K.Y.2    Fuller, A.3
  • 10
    • 33644871737 scopus 로고    scopus 로고
    • Gene expression profiling of 30 cancer cell lines predicts resistance towards 11 anticancer drugs at clinically achieved concentrations
    • Gyorffy B., Surowiak P., Kiesslich O., et al. Gene expression profiling of 30 cancer cell lines predicts resistance towards 11 anticancer drugs at clinically achieved concentrations. Int J Cancer 118 (2006) 1699-1712
    • (2006) Int J Cancer , vol.118 , pp. 1699-1712
    • Gyorffy, B.1    Surowiak, P.2    Kiesslich, O.3
  • 11
    • 35148833632 scopus 로고    scopus 로고
    • Immune-surveillance and programmed cell death-related genes are significantly overexpressed in the normal breast epithelium of postmenopausal parous women
    • Balogh G.A., Russo I.H., Spittle C., et al. Immune-surveillance and programmed cell death-related genes are significantly overexpressed in the normal breast epithelium of postmenopausal parous women. Int J Oncol 31 (2007) 303-312
    • (2007) Int J Oncol , vol.31 , pp. 303-312
    • Balogh, G.A.1    Russo, I.H.2    Spittle, C.3
  • 12
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • Lin L.I. A concordance correlation coefficient to evaluate reproducibility. Biometrics. 45 (1989) 255-268
    • (1989) Biometrics. , vol.45 , pp. 255-268
    • Lin, L.I.1
  • 13
    • 34247180104 scopus 로고    scopus 로고
    • Nonparametric estimation of the concordance correlation coefficient under univariate censoring
    • Guo Y., and Manatunga A.K. Nonparametric estimation of the concordance correlation coefficient under univariate censoring. Biometrics. 63 (2007) 164-172
    • (2007) Biometrics. , vol.63 , pp. 164-172
    • Guo, Y.1    Manatunga, A.K.2
  • 14
    • 33644778549 scopus 로고    scopus 로고
    • Laser microdissection and microarray analysis of breast tumors reveal ER-alpha related genes and pathways
    • Yang F., Foekens J.A., Yu J., et al. Laser microdissection and microarray analysis of breast tumors reveal ER-alpha related genes and pathways. Oncogene 25 (2006) 1413-1419
    • (2006) Oncogene , vol.25 , pp. 1413-1419
    • Yang, F.1    Foekens, J.A.2    Yu, J.3
  • 15
    • 10044275612 scopus 로고    scopus 로고
    • Assessment of gene expression in head and neck carcinoma using laser capture microdissection and real-time reverse transcription polymerase chain reaction
    • Malhotra P.S., Malekfzali A., Bonner R.F., et al. Assessment of gene expression in head and neck carcinoma using laser capture microdissection and real-time reverse transcription polymerase chain reaction. Laryngoscope 114 (2004) 2123-2128
    • (2004) Laryngoscope , vol.114 , pp. 2123-2128
    • Malhotra, P.S.1    Malekfzali, A.2    Bonner, R.F.3
  • 16
    • 1042287063 scopus 로고    scopus 로고
    • A quantitative real-time PCR method for tissue factor mRNA
    • Malarstig A., Tenno T., Jossan S., et al. A quantitative real-time PCR method for tissue factor mRNA. Thromb Res 112 (2003) 175-183
    • (2003) Thromb Res , vol.112 , pp. 175-183
    • Malarstig, A.1    Tenno, T.2    Jossan, S.3
  • 17
    • 16844375712 scopus 로고    scopus 로고
    • Expression of the carcinoembryonic antigen gene is inhibited by SOX9 in human colon carcinoma cells
    • Jay P., Berta P., and Blache P. Expression of the carcinoembryonic antigen gene is inhibited by SOX9 in human colon carcinoma cells. Cancer Res 65 (2005) 2193-2198
    • (2005) Cancer Res , vol.65 , pp. 2193-2198
    • Jay, P.1    Berta, P.2    Blache, P.3
  • 18
    • 0035882442 scopus 로고    scopus 로고
    • Sox8 gene expression identifies immature glial cells in developing cerebellum and cerebellar tumours
    • Cheng Y.C., Lee C.J., Badge R.M., et al. Sox8 gene expression identifies immature glial cells in developing cerebellum and cerebellar tumours. Brain Res Mol Brain Res 92 (2001) 193-200
    • (2001) Brain Res Mol Brain Res , vol.92 , pp. 193-200
    • Cheng, Y.C.1    Lee, C.J.2    Badge, R.M.3
  • 19
    • 20444466479 scopus 로고    scopus 로고
    • Elevated expression of Wnt antagonists is a common event in hepatoblastomas
    • Koch A., Waha A., Hartmann W., et al. Elevated expression of Wnt antagonists is a common event in hepatoblastomas. Clin Cancer Res 11 (2005) 4295-4304
    • (2005) Clin Cancer Res , vol.11 , pp. 4295-4304
    • Koch, A.1    Waha, A.2    Hartmann, W.3
  • 20
    • 0035902140 scopus 로고    scopus 로고
    • The Hedgehog and Wnt signaling pathways in cancer
    • Taipale J., and Beachy P.A. The Hedgehog and Wnt signaling pathways in cancer. Nature 411 (2001) 349-354
    • (2001) Nature , vol.411 , pp. 349-354
    • Taipale, J.1    Beachy, P.A.2
  • 21
    • 31544455796 scopus 로고    scopus 로고
    • Consistent rearrangement of chromosomal band 6p21 with generation of fusion genes JAZF1/PHF1 and EPC1/PHF1 in endometrial stromal sarcoma
    • Micci F., Panagopoulos I., Bjerkehagen B., and Heim S. Consistent rearrangement of chromosomal band 6p21 with generation of fusion genes JAZF1/PHF1 and EPC1/PHF1 in endometrial stromal sarcoma. Cancer Res 66 (2006) 107-112
    • (2006) Cancer Res , vol.66 , pp. 107-112
    • Micci, F.1    Panagopoulos, I.2    Bjerkehagen, B.3    Heim, S.4
  • 22
    • 0036229422 scopus 로고    scopus 로고
    • Molecular markers of endometrial epithelial cell mitogenesis mediated by the Sp/Kruppel-like factor BTEB1
    • Simmen R.C., Zhang X.L., Michel F.J., et al. Molecular markers of endometrial epithelial cell mitogenesis mediated by the Sp/Kruppel-like factor BTEB1. DNA Cell Biol 21 (2002) 115-128
    • (2002) DNA Cell Biol , vol.21 , pp. 115-128
    • Simmen, R.C.1    Zhang, X.L.2    Michel, F.J.3
  • 23
    • 0033598964 scopus 로고    scopus 로고
    • Dispatched, a novel sterol-sensing domain protein dedicated to the release of cholesterol-modified hedgehog from signaling cells
    • Burke R., Nellen D., Bellotto M., et al. Dispatched, a novel sterol-sensing domain protein dedicated to the release of cholesterol-modified hedgehog from signaling cells. Cell 99 (1999) 803-815
    • (1999) Cell , vol.99 , pp. 803-815
    • Burke, R.1    Nellen, D.2    Bellotto, M.3
  • 24
    • 0242268525 scopus 로고    scopus 로고
    • Widespread requirement for Hedgehog ligand stimulation in growth of digestive tract tumours
    • Berman D.M., Karhadkar S.S., Maitra A., et al. Widespread requirement for Hedgehog ligand stimulation in growth of digestive tract tumours. Nature 425 (2003) 846-851
    • (2003) Nature , vol.425 , pp. 846-851
    • Berman, D.M.1    Karhadkar, S.S.2    Maitra, A.3
  • 25
    • 0031737509 scopus 로고    scopus 로고
    • The enhancer of polycomb gene of Drosophila encodes a chromatin protein conserved in yeast and mammals
    • Stankunas K., Berger J., Ruse C., et al. The enhancer of polycomb gene of Drosophila encodes a chromatin protein conserved in yeast and mammals. Development 125 (1998) 4055-4066
    • (1998) Development , vol.125 , pp. 4055-4066
    • Stankunas, K.1    Berger, J.2    Ruse, C.3
  • 26
    • 4644319204 scopus 로고    scopus 로고
    • Stem cells and cancer; the polycomb connection
    • Valk-Lingbeek M.E., Bruggeman S.W., and van Lohuizen M. Stem cells and cancer; the polycomb connection. Cell 118 (2004) 409-418
    • (2004) Cell , vol.118 , pp. 409-418
    • Valk-Lingbeek, M.E.1    Bruggeman, S.W.2    van Lohuizen, M.3
  • 27
    • 33646865180 scopus 로고    scopus 로고
    • Control of developmental regulators by Polycomb in human embryonic stem cells
    • Lee T.I., Jenner R.G., Boyer L.A., et al. Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125 (2006) 301-313
    • (2006) Cell , vol.125 , pp. 301-313
    • Lee, T.I.1    Jenner, R.G.2    Boyer, L.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.