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Volumn 94, Issue 3, 2008, Pages 737-746

Osmotic pressure and packaging structure of caged DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DOUBLE STRANDED DNA; ELECTROLYTE; SODIUM; SODIUM CHLORIDE;

EID: 38549181536     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1529/biophysj.107.112508     Document Type: Article
Times cited : (31)

References (57)
  • 2
    • 31844435708 scopus 로고    scopus 로고
    • Structure of ε15 bacteriophage reveals genome organization and DNA packaging/injection apparatus
    • Jiang, W., J. Chang, J. Jakana, P. Weigele, J. King, and W. Chiu. 2006. Structure of ε15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature. 439:612-616.
    • (2006) Nature , vol.439 , pp. 612-616
    • Jiang, W.1    Chang, J.2    Jakana, J.3    Weigele, P.4    King, J.5    Chiu, W.6
  • 5
    • 85015087906 scopus 로고    scopus 로고
    • Ten years of tension: Single-molecule DNA mechanics
    • Bustamante, C., Z. Bryant, and S. B. Smith. 2003. Ten years of tension: single-molecule DNA mechanics. Nature. 421:423-427.
    • (2003) Nature , vol.421 , pp. 423-427
    • Bustamante, C.1    Bryant, Z.2    Smith, S.B.3
  • 7
    • 0026073819 scopus 로고
    • Liquid-crystalline, phage-like packing of encapsidated DNA in herpes-simplex virus
    • Booy, F. P., W. W. Newcomb, B. L. Trus, J. C. Brown, T. S. Baker, and A. C. Steven. 1991. Liquid-crystalline, phage-like packing of encapsidated DNA in herpes-simplex virus. Cell. 64:1007-1015.
    • (1991) Cell , vol.64 , pp. 1007-1015
    • Booy, F.P.1    Newcomb, W.W.2    Trus, B.L.3    Brown, J.C.4    Baker, T.S.5    Steven, A.C.6
  • 8
    • 0023341103 scopus 로고
    • Organization of double-stranded DNA in bacteriophages - a study by cryoelectron microscopy of vitrified samples
    • Lepault, J., J. Dubochet, W. Baschong, and E. Kellenberger. 1987. Organization of double-stranded DNA in bacteriophages - a study by cryoelectron microscopy of vitrified samples. EMBO J. 6:1507-1512.
    • (1987) EMBO J , vol.6 , pp. 1507-1512
    • Lepault, J.1    Dubochet, J.2    Baschong, W.3    Kellenberger, E.4
  • 9
    • 0036009140 scopus 로고    scopus 로고
    • Thermodynamics of DNA interactions from single molecule stretching experiments
    • Williams, M. C., I. Rouzina, and V. A. Bloomfield. 2002. Thermodynamics of DNA interactions from single molecule stretching experiments. Acc. Chem. Res. 35:159-166.
    • (2002) Acc. Chem. Res , vol.35 , pp. 159-166
    • Williams, M.C.1    Rouzina, I.2    Bloomfield, V.A.3
  • 10
    • 33745759318 scopus 로고    scopus 로고
    • Langevin dynamics simulations of genome packing in bacteriophage
    • Forrey, C., and M. Muthukumar. 2006. Langevin dynamics simulations of genome packing in bacteriophage. Biophys. J. 91:25-41.
    • (2006) Biophys. J , vol.91 , pp. 25-41
    • Forrey, C.1    Muthukumar, M.2
  • 11
    • 33645991802 scopus 로고    scopus 로고
    • Monte Carlo simulations of polyelectrolytes inside viral capsids
    • Angelescu, D. G., R. Bruinsma, and P. Linse. 2006. Monte Carlo simulations of polyelectrolytes inside viral capsids. Phys. Rev. E. 73:041921.
    • (2006) Phys. Rev. E , vol.73 , pp. 041921
    • Angelescu, D.G.1    Bruinsma, R.2    Linse, P.3
  • 13
    • 22244483736 scopus 로고    scopus 로고
    • DNA packaging in bacteriophage: Is twist important?
    • Spakowitz, A. J., and Z. G. Wang. 2005. DNA packaging in bacteriophage: is twist important? Biophys. J. 88:3912-3923.
    • (2005) Biophys. J , vol.88 , pp. 3912-3923
    • Spakowitz, A.J.1    Wang, Z.G.2
  • 14
    • 3042581451 scopus 로고    scopus 로고
    • Statics and dynamics of condensed DNA within phages and globules
    • Odijk, T. 2004. Statics and dynamics of condensed DNA within phages and globules. Philos. Transact. A. Math. Phys. Eng. Sci. 362:1497-1517.
    • (2004) Philos. Transact. A. Math. Phys. Eng. Sci , vol.362 , pp. 1497-1517
    • Odijk, T.1
  • 17
    • 0017657414 scopus 로고
    • DNA arrangement in isometric phage heads
    • Earnshaw, W. C., and S. C. Harrison. 1977. DNA arrangement in isometric phage heads. Nature. 268:598-602.
    • (1977) Nature , vol.268 , pp. 598-602
    • Earnshaw, W.C.1    Harrison, S.C.2
  • 18
    • 0000110880 scopus 로고
    • A study of the structure of highly concentrated phases of DNA by x-ray diffraction
    • Durand, D., J. Doucet, and F. Livolant. 1992. A study of the structure of highly concentrated phases of DNA by x-ray diffraction. J. Phys. II. 2:1769-1783.
    • (1992) J. Phys. II , vol.2 , pp. 1769-1783
    • Durand, D.1    Doucet, J.2    Livolant, F.3
  • 19
    • 33645150517 scopus 로고    scopus 로고
    • Condensation transition in DNA-polyaminoamide dendrimer fibers studied using optical tweezers
    • Ritort, F., S. Mihardja, S. B. Smith, and C. Bustamante. 2006. Condensation transition in DNA-polyaminoamide dendrimer fibers studied using optical tweezers. Phys. Rev. Lett. 96:118301.
    • (2006) Phys. Rev. Lett , vol.96 , pp. 118301
    • Ritort, F.1    Mihardja, S.2    Smith, S.B.3    Bustamante, C.4
  • 20
    • 0035909370 scopus 로고    scopus 로고
    • The bacteriophage phi 29 portal motor can package DNA against a large internal force
    • Smith, D. E., S. J. Tans, S. B. Smith, S. Grimes, D. L. Anderson, and C. Bustamante. 2001. The bacteriophage phi 29 portal motor can package DNA against a large internal force. Nature. 413:748-752.
    • (2001) Nature , vol.413 , pp. 748-752
    • Smith, D.E.1    Tans, S.J.2    Smith, S.B.3    Grimes, S.4    Anderson, D.L.5    Bustamante, C.6
  • 24
    • 11244340515 scopus 로고    scopus 로고
    • Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection
    • Evilevitch, A., J. W. Gober, M. Phillips, C. M. Knobler, and W. M. Gelbart. 2005. Measurements of DNA lengths remaining in a viral capsid after osmotically suppressed partial ejection. Biophys. J. 88:751-756.
    • (2005) Biophys. J , vol.88 , pp. 751-756
    • Evilevitch, A.1    Gober, J.W.2    Phillips, M.3    Knobler, C.M.4    Gelbart, W.M.5
  • 26
    • 0041887301 scopus 로고    scopus 로고
    • Nonuniform Donnan equilibrium within bacteriophages packed with DNA
    • Odijk, T., and F. Slok. 2003. Nonuniform Donnan equilibrium within bacteriophages packed with DNA. J. Phys. Chem. B. 107:8074-8077.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 8074-8077
    • Odijk, T.1    Slok, F.2
  • 27
    • 23444454552 scopus 로고    scopus 로고
    • Case, D. A., T. E. Cheatham III, T. Darden, H. Gohlke, R. Luo, K. M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang, and R. Woods. 2005. The Amber biomolecular simulation programs. J. Computat. Chem. 26:1668-1688.
    • Case, D. A., T. E. Cheatham III, T. Darden, H. Gohlke, R. Luo, K. M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang, and R. Woods. 2005. The Amber biomolecular simulation programs. J. Computat. Chem. 26:1668-1688.
  • 29
    • 33846987845 scopus 로고    scopus 로고
    • Structure and swelling of grafted polyelectrolytes: Predictions from a nonlocal density functional theory
    • Jiang, T., Z. D. Li, and J. Z. Wu. 2007. Structure and swelling of grafted polyelectrolytes: predictions from a nonlocal density functional theory. Macromolecules. 40:334-343.
    • (2007) Macromolecules , vol.40 , pp. 334-343
    • Jiang, T.1    Li, Z.D.2    Wu, J.Z.3
  • 30
    • 33646237126 scopus 로고    scopus 로고
    • Density functional theory for planar electric double layers: Closing the gap between simple and polyelectrolytes
    • Li, Z. D., and J. Z. Wu. 2006. Density functional theory for planar electric double layers: closing the gap between simple and polyelectrolytes. J. Phys. Chem. B. 110:7473-7484.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 7473-7484
    • Li, Z.D.1    Wu, J.Z.2
  • 31
    • 33144477230 scopus 로고    scopus 로고
    • Density functional theory for polyelectrolytes near oppositely charged surfaces
    • Li, Z. D., and J. Z. Wu. 2006. Density functional theory for polyelectrolytes near oppositely charged surfaces. Phys. Rev. Lett. 96:048302.
    • (2006) Phys. Rev. Lett , vol.96 , pp. 048302
    • Li, Z.D.1    Wu, J.Z.2
  • 32
    • 33645646005 scopus 로고    scopus 로고
    • Density functional theory for chemical engineering: From capillarity to soft materials
    • Wu, J. Z. 2006. Density functional theory for chemical engineering: from capillarity to soft materials. AIChE J. 52:1169-1193.
    • (2006) AIChE J , vol.52 , pp. 1169-1193
    • Wu, J.Z.1
  • 33
    • 33846978150 scopus 로고    scopus 로고
    • Density-functional theory for complex fluids
    • Wu, J. Z., and Z. D. Li. 2007. Density-functional theory for complex fluids. Annu. Rev. Phys. Chem. 58:85-112.
    • (2007) Annu. Rev. Phys. Chem , vol.58 , pp. 85-112
    • Wu, J.Z.1    Li, Z.D.2
  • 34
    • 0037175734 scopus 로고    scopus 로고
    • Fundamental measure theory for hard-sphere mixtures revisited: The White Bear version
    • Roth, R., R. Evans, A. Lang, and G. Kahl. 2002. Fundamental measure theory for hard-sphere mixtures revisited: the White Bear version. J. Phys. Condens. Matter. 14:12063-12078.
    • (2002) J. Phys. Condens. Matter , vol.14 , pp. 12063-12078
    • Roth, R.1    Evans, R.2    Lang, A.3    Kahl, G.4
  • 35
    • 0037045171 scopus 로고    scopus 로고
    • Structures of hard-sphere fluids from a modified fundamental-measure theory
    • Yu, Y. X., and J. Z. Wu. 2002. Structures of hard-sphere fluids from a modified fundamental-measure theory. J. Chem. Phys. 117:10156-10164.
    • (2002) J. Chem. Phys , vol.117 , pp. 10156-10164
    • Yu, Y.X.1    Wu, J.Z.2
  • 36
    • 36849102098 scopus 로고
    • Hard-sphere equation of state
    • Boublik, T. 1970. Hard-sphere equation of state. J. Chem. Phys. 53:471-472.
    • (1970) J. Chem. Phys , vol.53 , pp. 471-472
    • Boublik, T.1
  • 37
    • 36849106010 scopus 로고
    • Equilibrium thermodynamic properties of the mixture of hard spheres
    • Mansoori, G. A., N. F. Carnahan, K. E. Starling, and J. T. W. Leland. 1971. Equilibrium thermodynamic properties of the mixture of hard spheres. J. Chem. Phys. 54:1523-1525.
    • (1971) J. Chem. Phys , vol.54 , pp. 1523-1525
    • Mansoori, G.A.1    Carnahan, N.F.2    Starling, K.E.3    Leland, J.T.W.4
  • 38
    • 4244202584 scopus 로고
    • Free-energy model for the inhomogeneous hardsphere fluid mixture and density-functional theory of freezing
    • Rosenfeld, Y. 1989. Free-energy model for the inhomogeneous hardsphere fluid mixture and density-functional theory of freezing. Phys. Rev. Lett. 63:980-983.
    • (1989) Phys. Rev. Lett , vol.63 , pp. 980-983
    • Rosenfeld, Y.1
  • 39
    • 0000657216 scopus 로고
    • Free-energy model for the inhomogeneous hard-sphere fluid mixture - triplet and higher-order direct correlation-functions in dense fluids
    • Rosenfeld, Y., D. Levesque, and J. J. Weis. 1990. Free-energy model for the inhomogeneous hard-sphere fluid mixture - triplet and higher-order direct correlation-functions in dense fluids. J. Chem. Phys. 92:6818-6832.
    • (1990) J. Chem. Phys , vol.92 , pp. 6818-6832
    • Rosenfeld, Y.1    Levesque, D.2    Weis, J.J.3
  • 40
    • 0037078433 scopus 로고    scopus 로고
    • Structure and effective interactions in mult-icomponent hard-sphere liquids: The fundamental-measure density functional approach
    • Rosenfeld, Y. 2002. Structure and effective interactions in mult-icomponent hard-sphere liquids: the fundamental-measure density functional approach. J. Phys. Condens. Matter. 14:9141-9152.
    • (2002) J. Phys. Condens. Matter , vol.14 , pp. 9141-9152
    • Rosenfeld, Y.1
  • 41
    • 0036678668 scopus 로고    scopus 로고
    • Density functional theory for inhomogeneous mixtures of polymeric fluids
    • Yu, Y. X., and J. Z. Wu. 2002. Density functional theory for inhomogeneous mixtures of polymeric fluids. J. Chem. Phys. 117:2368-2376.
    • (2002) J. Chem. Phys , vol.117 , pp. 2368-2376
    • Yu, Y.X.1    Wu, J.Z.2
  • 42
    • 0011775424 scopus 로고
    • Thermodynamic perturbation theory of polymerization
    • Wertheim, M. S. 1987. Thermodynamic perturbation theory of polymerization. J. Chem. Phys. 87:7323-7331.
    • (1987) J. Chem. Phys , vol.87 , pp. 7323-7331
    • Wertheim, M.S.1
  • 43
    • 0001759552 scopus 로고    scopus 로고
    • A molecular-thermodynamic model for polyelectrolyte solutions
    • Jiang, J. W., H. L. Liu, Y. Hu, and J. M. Prausnitz. 1998. A molecular-thermodynamic model for polyelectrolyte solutions. J. Chem. Phys. 108:780-784.
    • (1998) J. Chem. Phys , vol.108 , pp. 780-784
    • Jiang, J.W.1    Liu, H.L.2    Hu, Y.3    Prausnitz, J.M.4
  • 44
    • 0035838756 scopus 로고    scopus 로고
    • Thermodynamic properties and phase equilibria of charged hard sphere chain model for polyelectrolyte solutions
    • Jiang, J. W., L. Blum, O. Bernard, and J. M. Prausnitz. 2001. Thermodynamic properties and phase equilibria of charged hard sphere chain model for polyelectrolyte solutions. Mol. Phys. 99:1121-1128.
    • (2001) Mol. Phys , vol.99 , pp. 1121-1128
    • Jiang, J.W.1    Blum, L.2    Bernard, O.3    Prausnitz, J.M.4
  • 45
    • 33847516779 scopus 로고
    • Supplement to Blum's theory for asymmetric electrolytes
    • Hiroike, K. 1977. Supplement to Blum's theory for asymmetric electrolytes. Mol. Phys. 33:1195-1198.
    • (1977) Mol. Phys , vol.33 , pp. 1195-1198
    • Hiroike, K.1
  • 46
    • 42749106873 scopus 로고    scopus 로고
    • Density-functional theory for the structures and thermodynamic properties of highly asymmetric electrolyte and neutral component mixtures
    • Li, Z. D., and J. Z. Wu. 2004. Density-functional theory for the structures and thermodynamic properties of highly asymmetric electrolyte and neutral component mixtures. Phys. Rev. E. 70:031109.
    • (2004) Phys. Rev. E , vol.70 , pp. 031109
    • Li, Z.D.1    Wu, J.Z.2
  • 47
    • 18744413950 scopus 로고    scopus 로고
    • Density-functional theory and Monte Carlo simulation for the surface structure and correlation functions of freely jointed Lennard-Jones polymeric fluids
    • Li, Z. D., D. P. Cao, and J. Z. Wu. 2005. Density-functional theory and Monte Carlo simulation for the surface structure and correlation functions of freely jointed Lennard-Jones polymeric fluids. J. Chem. Phys. 122:174708.
    • (2005) J. Chem. Phys , vol.122 , pp. 174708
    • Li, Z.D.1    Cao, D.P.2    Wu, J.Z.3
  • 48
    • 0034642764 scopus 로고    scopus 로고
    • Do free DNA counterions control the osmotic pressure?
    • Raspaud, E., M. da Conceicao, and F. Livolant. 2000. Do free DNA counterions control the osmotic pressure? Phys. Rev. Lett. 84:2533-2536.
    • (2000) Phys. Rev. Lett , vol.84 , pp. 2533-2536
    • Raspaud, E.1    da Conceicao, M.2    Livolant, F.3
  • 49
    • 0000900350 scopus 로고    scopus 로고
    • Real ionic solutions in the mean spherical approximation. 2. Pure strong electrolytes up to very high concentrations, and mixtures, in the primitive model
    • Simonin, J. P. 1997. Real ionic solutions in the mean spherical approximation. 2. Pure strong electrolytes up to very high concentrations, and mixtures, in the primitive model. J. Phys. Chem. B. 101:4313-4320.
    • (1997) J. Phys. Chem. B , vol.101 , pp. 4313-4320
    • Simonin, J.P.1
  • 50
    • 0001204140 scopus 로고    scopus 로고
    • Real ionic solutions in the mean spherical approximation. 3. Osmotic and activity coefficients for associating electrolytes in the primitive model
    • Simonin, J. P., O. Bernard, and L. Blum. 1998. Real ionic solutions in the mean spherical approximation. 3. Osmotic and activity coefficients for associating electrolytes in the primitive model. J. Phys. Chem. B. 102:4411-4417.
    • (1998) J. Phys. Chem. B , vol.102 , pp. 4411-4417
    • Simonin, J.P.1    Bernard, O.2    Blum, L.3
  • 52
    • 33644569042 scopus 로고
    • Exact formula for the contact value of the density profile of a system of charged hard-spheres near a charged wall
    • Henderson, D., L. Blum, and J. L. Lebowitz. 1979. Exact formula for the contact value of the density profile of a system of charged hard-spheres near a charged wall. J. Electroanal. Chem. 102:315-319.
    • (1979) J. Electroanal. Chem , vol.102 , pp. 315-319
    • Henderson, D.1    Blum, L.2    Lebowitz, J.L.3
  • 53
    • 0018727424 scopus 로고
    • Structural studies of bacteriophage λ-heads and λ-proheads by small-angle x-ray-diffraction
    • Earnshaw, W. C., R. W. Hendrix, and J. King. 1979. Structural studies of bacteriophage λ-heads and λ-proheads by small-angle x-ray-diffraction. J. Mol. Biol. 134:575-594.
    • (1979) J. Mol. Biol , vol.134 , pp. 575-594
    • Earnshaw, W.C.1    Hendrix, R.W.2    King, J.3
  • 54
    • 0014913098 scopus 로고
    • Capsid size and deoxyribonucleic acid length - petite variant of bacteriophage-T4
    • Eiserling, F. A., E. P. Geiduschek, R. H. Epstein, and E. J. Metter. 1970. Capsid size and deoxyribonucleic acid length - petite variant of bacteriophage-T4. J. Virol. 6:865-876.
    • (1970) J. Virol , vol.6 , pp. 865-876
    • Eiserling, F.A.1    Geiduschek, E.P.2    Epstein, R.H.3    Metter, E.J.4
  • 55
    • 0031688164 scopus 로고    scopus 로고
    • Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress
    • Odijk, T. 1998. Hexagonally packed DNA within bacteriophage T7 stabilized by curvature stress. Biophys. J. 75:1223-1227.
    • (1998) Biophys. J , vol.75 , pp. 1223-1227
    • Odijk, T.1
  • 56
    • 0037340654 scopus 로고    scopus 로고
    • Forces and pressures in DNA packaging and release from viral capsids
    • Tzlil, S., J. T. Kindt, W. M. Gelbart, and A. Ben-Shaul. 2003. Forces and pressures in DNA packaging and release from viral capsids. Biophys. J. 84:1616-1627.
    • (2003) Biophys. J , vol.84 , pp. 1616-1627
    • Tzlil, S.1    Kindt, J.T.2    Gelbart, W.M.3    Ben-Shaul, A.4
  • 57
    • 0018932980 scopus 로고
    • DNA Packaging by the double-stranded DNA bacteriophages
    • Earnshaw, W. C., and S. R. Casjens. 1980. DNA Packaging by the double-stranded DNA bacteriophages. Cell. 21:319-331.
    • (1980) Cell , vol.21 , pp. 319-331
    • Earnshaw, W.C.1    Casjens, S.R.2


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