-
1
-
-
0033707946
-
Using Bayesian Networks to Analyze Expression Data
-
10.1089/106652700750050961 11108481
-
Friedman N et al Using Bayesian Networks to Analyze Expression Data Journal of Computational Biology 2000 7 3-4 601-620 10.1089/106652700750050961 11108481
-
(2000)
Journal of Computational Biology
, vol.7
, Issue.3-4
, pp. 601-620
-
-
Friedman, N.1
-
2
-
-
27544503451
-
Growing Bayesian network model of gene networks from seed genes
-
10.1093/bioinformatics/bti1137 16204109
-
Pena JM Bjorkegren J Tegner J Growing Bayesian network model of gene networks from seed genes Bioinformatics 2005 21 Suppl 2 ii224-ii229 10.1093/bioinformatics/bti1137 16204109
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Pena, J.M.1
Bjorkegren, J.2
Tegner, J.3
-
3
-
-
0030848624
-
A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements
-
10.1126/science.277.5330.1275
-
Arkin A A Test Case of Correlation Metric Construction of a Reaction Pathway from Measurements Science 1997 277 5330 1275-1279 10.1126/ science.277.5330.1275
-
(1997)
Science
, vol.277
, Issue.5330
, pp. 1275-1279
-
-
Arkin, A.1
-
4
-
-
84950945692
-
Model Selection and Accounting for Model Uncertainly in Graphical Models Using Occam's Window
-
12155397
-
Madigan D Raftery AE Model Selection and Accounting for Model Uncertainly in Graphical Models Using Occam's Window Journal of the American Statistical Association 1994 89 428 12155397
-
(1994)
Journal of the American Statistical Association
, vol.89
, Issue.428
-
-
Madigan, D.1
Raftery, A.E.2
-
5
-
-
4644372593
-
Dynamic Bayesian Network and Nonparametric Regression Model for Inferring Gene Networks
-
Kim SY Imoto S Miyano S Dynamic Bayesian Network and Nonparametric Regression Model for Inferring Gene Networks Genome Informatics 2002 13 371-372
-
(2002)
Genome Informatics
, vol.13
, pp. 371-372
-
-
Kim, S.Y.1
Imoto, S.2
Miyano, S.3
-
6
-
-
0037461033
-
Dynamic modeling of genetic networks using genetic algorithm and S-system
-
10.1093/bioinformatics/btg027 12651723
-
Kikuchi S et al Dynamic modeling of genetic networks using genetic algorithm and S-system Bioinformatics 2003 19 5 643-650 10.1093/bioinformatics/btg027 12651723
-
(2003)
Bioinformatics
, vol.19
, Issue.5
, pp. 643-650
-
-
Kikuchi, S.1
-
7
-
-
16344364990
-
Inference of S-system models of genetic networks from noisy time-series data
-
10.1273/cbij.4.1
-
Kimura S Hatakeyama M Konagaya A Inference of S-system models of genetic networks from noisy time-series data Chem-Bio Informatics Journal 2004 4 1 1-14 10.1273/cbij.4.1
-
(2004)
Chem-Bio Informatics Journal
, vol.4
, Issue.1
, pp. 1-14
-
-
Kimura, S.1
Hatakeyama, M.2
Konagaya, A.3
-
8
-
-
0038047901
-
On Learning Gene Regulatory Networks Under the Boolean Network Model
-
10.1023/A:1023905711304
-
Lädesmäi H Shmulevich I Yli-Harja O On Learning Gene Regulatory Networks Under the Boolean Network Model Machine Learning 2003 52 1 147-167 10.1023/A:1023905711304
-
(2003)
Machine Learning
, vol.52
, Issue.1
, pp. 147-167
-
-
Lädesmäi, H.1
Shmulevich, I.2
Yli-Harja, O.3
-
9
-
-
20744440332
-
Inferring genetic regulatory logic from expression data
-
10.1093/bioinformatics/bti388 15784747
-
Bulashevska S Eils R Inferring genetic regulatory logic from expression data Bioinformatics 2005 21 11 2706-2713 10.1093/bioinformatics/bti388 15784747
-
(2005)
Bioinformatics
, vol.21
, Issue.11
, pp. 2706-2713
-
-
Bulashevska, S.1
Eils, R.2
-
10
-
-
24644493356
-
Learning Petri net models of non-linear gene interactions
-
10.1016/j.biosystems.2005.06.002 16024165
-
Mayo M Learning Petri net models of non-linear gene interactions Biosystems 2005 82 1 74-82 10.1016/j.biosystems.2005.06.002 16024165
-
(2005)
Biosystems
, vol.82
, Issue.1
, pp. 74-82
-
-
Mayo, M.1
-
11
-
-
19944402951
-
Large-Scale Extraction of Gene Regulation for Model Organisms in an Ontological Context
-
15972005
-
Saric J Large-Scale Extraction of Gene Regulation for Model Organisms in an Ontological Context In Silico Biology 2005 5 1 21-32 15972005
-
(2005)
In Silico Biology
, vol.5
, Issue.1
, pp. 21-32
-
-
Saric, J.1
-
12
-
-
33645104154
-
Extraction of regulatory gene/protein networks from Medline
-
10.1093/bioinformatics/bti597 16046493
-
Saric J et al Extraction of regulatory gene/protein networks from Medline Bioinformatics 2006 22 6 645 10.1093/bioinformatics/bti597 16046493
-
(2006)
Bioinformatics
, vol.22
, Issue.6
, pp. 645
-
-
Saric, J.1
-
13
-
-
0036366689
-
Combining location and expression data for principled discovery of genetic regulatory network models
-
Hartemink AJ et al Combining location and expression data for principled discovery of genetic regulatory network models Pac Symp Biocomput 2002 7 437-449
-
(2002)
Pac Symp Biocomput
, vol.7
, pp. 437-449
-
-
Hartemink, A.J.1
-
14
-
-
19544364324
-
Selective integration of multiple biological data for supervised network inference
-
10.1093/bioinformatics/bti339 15728114
-
Kato T Tsuda K Asai K Selective integration of multiple biological data for supervised network inference Bioinformatics 2005 21 10 2488-2495 10.1093/bioinformatics/bti339 15728114
-
(2005)
Bioinformatics
, vol.21
, Issue.10
, pp. 2488-2495
-
-
Kato, T.1
Tsuda, K.2
Asai, K.3
-
15
-
-
15944376548
-
A Statistical Method for Constructing Transcriptional Regulatory Networks Using Gene Expression and Sequence Data
-
10.1089/cmb.2005.12.229 15767778
-
Xing B van der Laan MJ A Statistical Method for Constructing Transcriptional Regulatory Networks Using Gene Expression and Sequence Data Journal of Computational Biology 2005 12 2 229-246 10.1089/ cmb.2005.12.229 15767778
-
(2005)
Journal of Computational Biology
, vol.12
, Issue.2
, pp. 229-246
-
-
Xing, B.1
van der Laan, M.J.2
-
16
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
99122 11752295 10.1093/nar/30.1.207
-
Edgar R Domrachev M Lash AE Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Research 2002 30 1 207-210 99122 11752295 10.1093/nar/30.1.207
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
17
-
-
0037246058
-
ArrayExpress - A public repository for microarray gene expression data at the EBI
-
165538 12519949 10.1093/nar/gkg091
-
Brazma A et al ArrayExpress - A public repository for microarray gene expression data at the EBI Nucleic Acids Research 2003 31 1 68-71 165538 12519949 10.1093/nar/gkg091
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 68-71
-
-
Brazma, A.1
-
18
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
403769 14597658 10.1101/gr.1239303
-
Shannon P et al Cytoscape: A software environment for integrated models of biomolecular interaction networks Genome Res 2003 13 11 2498-504 403769 14597658 10.1101/gr.1239303
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
-
19
-
-
0036372791
-
The ERATO Systems Biology Workbench: Enabling interaction and exchange between software tools for computational biology
-
Hucka M et al The ERATO Systems Biology Workbench: Enabling interaction and exchange between software tools for computational biology Pac Symp Biocomput 2002 1 450-461
-
(2002)
Pac Symp Biocomput
, vol.1
, pp. 450-461
-
-
Hucka, M.1
-
20
-
-
0345359315
-
myGrid: Personalised bioinformatics on the information grid
-
10.1093/bioinformatics/btg1041 12855473
-
Stevens RD Robinson AJ Goble CA myGrid: Personalised bioinformatics on the information grid Bioinformatics 2003 19 Suppl 1 i302-i304 10.1093/ bioinformatics/btg1041 12855473
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Stevens, R.D.1
Robinson, A.J.2
Goble, C.A.3
-
21
-
-
84886765979
-
-
Temporal Association Rule Mining http://biosoft.kaist.ac.kr/~hjnam/TARM/ TARM.html
-
-
-
-
22
-
-
20744441547
-
Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
-
10.1093/bioinformatics/bti406 15797909
-
Lee PH Lee D Modularized learning of genetic interaction networks from biological annotations and mRNA expression data Bioinformatics 2005 21 11 2739-2747 10.1093/bioinformatics/bti406 15797909
-
(2005)
Bioinformatics
, vol.21
, Issue.11
, pp. 2739-2747
-
-
Lee, P.H.1
Lee, D.2
-
23
-
-
33947305781
-
ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context
-
1810318 16723010 10.1186/1471-2105-7-S1-S7
-
Margolin AA et al ARACNE: An algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context BMC Bioinformatics 2006 7 Suppl 1 S7 1810318 16723010 10.1186/1471-2105-7-S1-S7
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.SUPPL. 1
-
-
Margolin, A.A.1
-
24
-
-
2942549190
-
PreBIND and Textomy - Mining the biomedical literature for protein-protein interactions using a support vector machine
-
153503 12689350 10.1186/1471-2105-4-11
-
Donaldson I et al PreBIND and Textomy - mining the biomedical literature for protein-protein interactions using a support vector machine BMC Bioinformatics 2003 4 11 153503 12689350 10.1186/1471-2105-4-11
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 11
-
-
Donaldson, I.1
-
25
-
-
33947312171
-
Text detective: A rule-based system for gene annotation in biomedical texts
-
1869003 1869003 15960822 10.1186/1471-2105-6-S1-S10
-
Tamames J Text detective: A rule-based system for gene annotation in biomedical texts BMC Bioinformatics 2005 6 Suppl 1 S10 1869003 15960822 10.1186/1471-2105-6-S1-S10
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Tamames, J.1
-
26
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
10.1038/79896 11017073
-
Cohen BA et al A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression Nat Genet 2000 26 2 183-6 10.1038/79896 11017073
-
(2000)
Nat Genet
, vol.26
, Issue.2
, pp. 183-186
-
-
Cohen, B.A.1
-
27
-
-
0034307634
-
Genome-wide analysis relating expression level with protein subcellular localization
-
10.1016/S0168-9525(00)02108-9 11050323
-
Drawid A Jansen R Gerstein M Genome-wide analysis relating expression level with protein subcellular localization Trends Genet 2000 16 10 426-30 10.1016/S0168-9525(00)02108-9 11050323
-
(2000)
Trends Genet
, vol.16
, Issue.10
, pp. 426-430
-
-
Drawid, A.1
Jansen, R.2
Gerstein, M.3
-
28
-
-
0344011136
-
Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation
-
219468 14530453 10.1093/nar/gkg787
-
Yeger-Lotem E Margalit H Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation Nucleic Acids Res 2003 31 20 6053-61 219468 14530453 10.1093/ nar/gkg787
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6053-6061
-
-
Yeger-Lotem, E.1
Margalit, H.2
-
29
-
-
84886763773
-
-
Business Process Execution Language for Web Services (BPEL), Version 1.1 http://www-128.ibm.com/developerworks/library/specification/ws-bpel/
-
-
-
|