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Volumn 4756 LNCS, Issue , 2007, Pages 32-41

A system biology approach for the steady-state analysis of gene signaling networks

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL FACTORS; GENE SIGNALING NETWORKS; REGULATORY PATHWAYS; STEADY-STATE ANALYSIS; SYSTEM BIOLOGY;

EID: 38449092604     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: None     Document Type: Conference Paper
Times cited : (33)

References (31)
  • 3
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • Khatri, P., Drǎghici, S.: Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 21(18), 3587-3595 (2005)
    • (2005) Bioinformatics , vol.21 , Issue.18 , pp. 3587-3595
    • Khatri, P.1    Drǎghici, S.2
  • 4
    • 3142673366 scopus 로고    scopus 로고
    • Using the gene ontology for microarray data mining: A comparison of methods and application to age effects in human prefrontal cortex
    • Pavlidis, P., Qin, J., Arango, V., Mann, J.J., Sibille, E.: Using the gene ontology for microarray data mining: A comparison of methods and application to age effects in human prefrontal cortex. Neurochemical Research 29(6), 1213-1222 (2004)
    • (2004) Neurochemical Research , vol.29 , Issue.6 , pp. 1213-1222
    • Pavlidis, P.1    Qin, J.2    Arango, V.3    Mann, J.J.4    Sibille, E.5
  • 5
    • 0345832338 scopus 로고    scopus 로고
    • A global test for groups of genes: Testing association with a clinical outcome
    • Goeman, J.J., van de Geer, S.A., de Kort, F., van Houwelingen, H.C.: A global test for groups of genes: testing association with a clinical outcome. Bioinformatics 20(1), 93-99 (2004)
    • (2004) Bioinformatics , vol.20 , Issue.1 , pp. 93-99
    • Goeman, J.J.1    van de Geer, S.A.2    de Kort, F.3    van Houwelingen, H.C.4
  • 9
    • 4644268555 scopus 로고    scopus 로고
    • Mathematical models in microbial systems biology
    • Stelling, J.: Mathematical models in microbial systems biology. Current opinion in microbiology 7(5), 513-518 (2004)
    • (2004) Current opinion in microbiology , vol.7 , Issue.5 , pp. 513-518
    • Stelling, J.1
  • 11
    • 0037263812 scopus 로고    scopus 로고
    • MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene expression profile from microarray data
    • Doniger, S.W., Salomonis, N., Dahlquist, K.D., Vranizan, K., Lawlor, S.C., Conklin, B.R.: MAPPFinder: using Gene Ontology and GenMAPP to create a global gene expression profile from microarray data. Genome biology 4(1), R7 (2003)
    • (2003) Genome biology , vol.4 , Issue.1
    • Doniger, S.W.1    Salomonis, N.2    Dahlquist, K.D.3    Vranizan, K.4    Lawlor, S.C.5    Conklin, B.R.6
  • 12
    • 2942517980 scopus 로고    scopus 로고
    • PathMAPA: A tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arbidopsis
    • Pan, D., Sun, N., Cheung, K.H., Guan, Z., Ma, L., Holford, M., Deng, X., Zhao, H.: PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arbidopsis. BMC Bioinformatics 4(1), 56 (2003)
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 56
    • Pan, D.1    Sun, N.2    Cheung, K.H.3    Guan, Z.4    Ma, L.5    Holford, M.6    Deng, X.7    Zhao, H.8
  • 13
    • 4544287189 scopus 로고    scopus 로고
    • Pathway Miner: Extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data
    • Pandey, R., Guru, R.K., Mount, D.W.: Pathway Miner: extracting gene association networks from molecular pathways for predicting the biological significance of gene expression microarray data. Bioinformatics 20(13), 2156-2158 (2004)
    • (2004) Bioinformatics , vol.20 , Issue.13 , pp. 2156-2158
    • Pandey, R.1    Guru, R.K.2    Mount, D.W.3
  • 14
    • 25444497450 scopus 로고    scopus 로고
    • Signal transduction pathway profiling of individual tumor samples
    • Breslin, T., Krogh, M., Peterson, C., Troein, C.: Signal transduction pathway profiling of individual tumor samples. BMC Bioinformatics 6, 1471-2105 (2005)
    • (2005) BMC Bioinformatics , vol.6 , pp. 1471-2105
    • Breslin, T.1    Krogh, M.2    Peterson, C.3    Troein, C.4
  • 15
    • 2342432868 scopus 로고    scopus 로고
    • Ontologizing geneexpression microarray data: Characterizing clusters with gene ontology
    • Robinson, P.N., Wollstein, A., Bohme, U., Beattie, B.: Ontologizing geneexpression microarray data: characterizing clusters with gene ontology. Bioinformatics 20(6), 979-981 (2004)
    • (2004) Bioinformatics , vol.20 , Issue.6 , pp. 979-981
    • Robinson, P.N.1    Wollstein, A.2    Bohme, U.3    Beattie, B.4
  • 16
    • 0038589165 scopus 로고    scopus 로고
    • The anatomy of a large-scale hypertextual Web search engine
    • Brin, S., Page, L.: The anatomy of a large-scale hypertextual Web search engine. Computer Networks and ISDN Systems 30(1-7), 107-117 (1998)
    • (1998) Computer Networks and ISDN Systems , vol.30 , Issue.1-7 , pp. 107-117
    • Brin, S.1    Page, L.2
  • 17
    • 0004255482 scopus 로고    scopus 로고
    • Efficient computation of PageRank
    • Technical Report 1999-31, Database Group, Computer Science Department, Stanford University February
    • Haveliwala, T.: Efficient computation of PageRank. Technical Report 1999-31, Database Group, Computer Science Department, Stanford University (February 1999)
    • (1999)
    • Haveliwala, T.1
  • 18
    • 0003780986 scopus 로고    scopus 로고
    • The pagerank citation ranking: Bringing order to the web
    • Technical report
    • Page, L., Brin, S., Motwani, R., Winograd, T.: The pagerank citation ranking: Bringing order to the web. Technical report (1998)
    • (1998)
    • Page, L.1    Brin, S.2    Motwani, R.3    Winograd, T.4
  • 20
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements
    • Draghici, S., Khatri, P., Eklund, A.C., Szallasi, Z.: Reliability and reproducibility issues in DNA microarray measurements. Trends Genet, 22(2), 101-109 (2006)
    • (2006) Trends Genet , vol.22 , Issue.2 , pp. 101-109
    • Draghici, S.1    Khatri, P.2    Eklund, A.C.3    Szallasi, Z.4
  • 22
    • 34548433540 scopus 로고    scopus 로고
    • Hassan, S.S., Romero, R., Tarca, A.L., et al.: Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition. Am. J. Obstet. Gynecol. 197(3), 250.el-250.e7 (2007)
    • Hassan, S.S., Romero, R., Tarca, A.L., et al.: Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition. Am. J. Obstet. Gynecol. 197(3), 250.el-250.e7 (2007)
  • 24
    • 84872256757 scopus 로고    scopus 로고
    • Tarca, A.L., Carey, V.J., Chen, X.W., Romero, R., Draghici, S.: Machine learning and its applications to biology. PLoS Comput. Biol. 3(6), e116 (2007)
    • Tarca, A.L., Carey, V.J., Chen, X.W., Romero, R., Draghici, S.: Machine learning and its applications to biology. PLoS Comput. Biol. 3(6), e116 (2007)
  • 26
    • 34848913096 scopus 로고    scopus 로고
    • Saito, S., Shima, T., Nakashima, A., Shiozaki, A., Ito, M., Sasaki, Y.: What is the role of regulatory t cells in the success of implantation and early pregnancy? J. Assist Reprod. Genet. Epub. ahead of print (August 2007)
    • Saito, S., Shima, T., Nakashima, A., Shiozaki, A., Ito, M., Sasaki, Y.: What is the role of regulatory t cells in the success of implantation and early pregnancy? J. Assist Reprod. Genet. Epub. ahead of print (August 2007)
  • 27
    • 35348872511 scopus 로고    scopus 로고
    • Innate immune defences in the human uterus during pregnancy
    • Epub ahead of print July
    • King, A., Kelly, R., Sallenave, J., Bocking, A., Challis, J.: Innate immune defences in the human uterus during pregnancy. Placenta Epub ahead of print (July 2007)
    • (2007) Placenta
    • King, A.1    Kelly, R.2    Sallenave, J.3    Bocking, A.4    Challis, J.5
  • 28
    • 0032971158 scopus 로고    scopus 로고
    • Differential expression of proteases in human gestational tissues before, during and after spontaneous-onset labour at term
    • Tsatas, D., Baker, M.S., Rice, G.E.: Differential expression of proteases in human gestational tissues before, during and after spontaneous-onset labour at term. J. Reprod. Fertil. 116(1), 43-49 (1999)
    • (1999) J. Reprod. Fertil , vol.116 , Issue.1 , pp. 43-49
    • Tsatas, D.1    Baker, M.S.2    Rice, G.E.3
  • 29
    • 0024389776 scopus 로고
    • Influence of delivery on plasminogen activator inhibitor activity
    • Koelbl, H., Kirchheimer, J., Tatra, G.: Influence of delivery on plasminogen activator inhibitor activity. J. Perinat. Med. 17(2), 107-111 (1989)
    • (1989) J. Perinat. Med , vol.17 , Issue.2 , pp. 107-111
    • Koelbl, H.1    Kirchheimer, J.2    Tatra, G.3
  • 30
    • 0029049610 scopus 로고
    • Extracellular matrix interactions in early human embryos: Implications for normal implantation events
    • Turpeenniemi-Hujanen, T., Feinberg, R.F., Kauppila, A., Puistola, U.: Extracellular matrix interactions in early human embryos: implications for normal implantation events. Fertil Steril 64(1), 132-138 (1995)
    • (1995) Fertil Steril , vol.64 , Issue.1 , pp. 132-138
    • Turpeenniemi-Hujanen, T.1    Feinberg, R.F.2    Kauppila, A.3    Puistola, U.4
  • 31
    • 0034026590 scopus 로고    scopus 로고
    • Expression of matrix metalloproteinase-2, -9, and -14, tissue inhibitors of metalloproteinase1, and matrix proteins in human placenta during the first trimester
    • Xu, P., Wang, Y.L., Zhu, S.J., Luo, S.Y., Piao, Y.S., Zhuang, L.Z.: Expression of matrix metalloproteinase-2, -9, and -14, tissue inhibitors of metalloproteinase1, and matrix proteins in human placenta during the first trimester. Biol. Reprod. 62(4), 988-994 (2000)
    • (2000) Biol. Reprod , vol.62 , Issue.4 , pp. 988-994
    • Xu, P.1    Wang, Y.L.2    Zhu, S.J.3    Luo, S.Y.4    Piao, Y.S.5    Zhuang, L.Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.