A molecular phylogenetic study of Arnica (Asteraceae): Low chloroplast DNA variation and problematic subgeneric classification

Systematic Botany

Volumn 32, Issue 4, 2007, Pages 917-928

  Ekenäs, Catarina ^a   Baldwin, Bruce G ^b   Andreasen, Katarina ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Arnica; Asteraceae; Chloroplast; Compositae; dealbata; ETS; ITS; mallotopus; Phylogeny

Indexed keywords

ARNICA; ARNICA DEALBATA; ARNICA MALLOTOPUS; ARNICA MONTANA; ARNICA NEVADENSIS; ARNICA UNALASCHCENSIS; ASTERACEAE;

EID: 38349162038     PISSN: 03636445     EISSN: 15482324     Source Type: Journal    
DOI: 10.1600/036364407783390728     Document Type: Article

References (51)

1. ANDREASEN, K., B. G. BALDWIN, and B. BREMER. 1999. Phylogenetic utility of the nuclear rDNA ITS region in the subfamily Ixoroideae (Rubiaceae): Comparisons with cpDNA rbcL sequence data. Plant Systematics and Evolution 217: 119-135.
2. ASMUSSEN, C. 1999. Toward a chloroplast DNA phylogeny of the tribe Geonomeae (Palmae). Memoirs of the New York Botanical Garden 83: 121-129.
3. BALDWIN, B. G. 1999. New combinations in Californian Arnica and Monolopia (Compositae). Novon 9: 460-461.
4. _ and S. MARKOS. 1998. Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: Congruence of ETS and ITS trees of Calycadenia (Compositae). Molecular Phylogenetics and Evolution 10: 449-463.
5. _ and B. L. WESSA. 2000. Origin and relationships of the tarweed-silversword lineage (Compositae-Madiinae). American Journal of Botany 87: 1890-1908.
6. _, _, and J. L. PANERO. 2002. Nuclear rDNA evidence for major lineages of helenioid Heliantheae (Compositae). Systematic Botany 27: 161-198.
7. BENTHAM, G. 1873. Notes on the classification, history, and geographical distribution of Compositae. Journal of the Linnean Society (Botany) London 13: 335-577.
8. BREMER, B., K. BREMER, N. HEIDARI, P. ERIXON, R. G. OLMSTEDT, A. A. ANDERBERG, M. KÄLLERSJÖ, and E. BARKHORDARIAN. 2002. Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels. Molecular Phylogenetics and Evolution 24: 274-301.
9. CRONN, R. C., R. L. SMALL, T. HASELKORN, and J. F. WENDEL. 2002. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. American Journal of Botany 89: 707-725.
10. CRONQUIST, A. 1955. Compositae. In Vascular plants of the Pacific Northwest. Part 5. Seattle: University of Washington Press.
11. DOWNIE, S. R. 1988. Morphological, cytological, and flavonoid variability of the Arnica-angustifolia aggregate (Asteraceae). Canadian Journal of Botany 66: 24-39.
12. _ and K. E. DENFORD. 1986. The flavonoids of Arnica frigida and Arnica louiseana (Asteraceae). Canadian Journal of Botany 64: 2748-2752.
13. _ and _. 1988a. Taxonomy of Arnica (Asteraceae) subgenus Arctica. Rhodora 90: 245-275.
14. _ and _. 1988b. Flavonoid variation in Arnica subgenus Arctica. Biochemical Systematics and Ecology 16: 133-137.
15. _ and D. S. KATZ-DOWNIE. 1996. A molecular phylogeny of Apiaceae subfamily Apioideae: Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. American Journal of Botany 83: 234-251.
16. _, _, and M. F. WATSON. 2000. A phylogeny of the flowering plant family Apiaceae based on chloroplast DNA rpl16 and rpoC1 intron sequences: towards a suprageneric classification of subfamily Apioideae. American Journal of Botany 87: 273-292.
17. DOYLE, J. J. and J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, Botanical Society of America 19: 11-15.
18. EBERT, M., I. MERFORT, and G. WILLUHN. 1988. Flavonoid distribution in Arnica subgenera Montana and Austromontana. Phytochemistry (Oxford) 27: 3849-3852.
19. EDIGER, R. I. and T. M. BARKLEY. 1978. Arnica. In North American Flora. Series II. Part 10. New York: New York Botanical Garden.
20. ERIXON, P., B. SVENNBLAD, T. BRITTON, and B. OXELMAN. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology 52: 665-673.
21. GRUEZO, W. S. and K. E. DENFORD. 1994. Taxonomy of Arnica L. subgenus Chamissonis Maguire (Asteraceae). Asia Life Sciences 3: 89-212.
22. _ and _. 1995. Foliar flavonoid variation in Arnica L. subgenus Chamissonis Maguire (Asteraceae) in western North America. Asia Life Sciences 4: 151-170.
23. HARTMANN, S., J. D. NASON, and D. BHATTACHARYA. 2002. Phylogenetic origins of Lophocereus (Cactaceae) and the senita cactus-senita moth pollination mutualism. American Journal of Botany 89: 1085-1092.
24. HUELSENBECK, J. and F. RONQUIST. 2001. MrBayes. Bayesian Inference of Phylogeny. Bioinformatics 17: 754-755.
25. JEFFREY, C. and C. YI-LING. 1995. Senecioneae. In Flora of Japan. Vol. IIIb, Angiospermae, Dicotyledoneae, Sympetalae (b). Tokyo: K. Iwatsuki.
26. LANTZ, H. and B. BREMER. 2004. Phylogeny inferred from morphology and DNA data: characterizing well-supported groups in Vanguerieae (Rubiaceae). Botanical Journal of the Linnean Society 146: 257-283.
27. MAGUIRE, B. 1943. A monograph of the genus Arnica (Senecioneae, Compositae). Brittonia 4: 386-510.
28. NORDENSTAM, B. 1977. Senecioneae and Liabeae - systematic review. Pp. 799-830 in The Biology and Chemistry of the Compositae, vol. 2, eds. V. H. Heywood, J. B. Harborne, and B. L. Turner. London: Academic Press.
29. NYLANDER, J. A. A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
30. ORNDUFF, R. O., T. MOSQUIN, D. W. KYHOS, and P. H. RAVEN. 1967. Chromosome numbers in Compositae. VI. Senecioneae. II. American Journal of Botany 54: 205-213.
31. OXELMAN, B., M. LIDEN, and D. BERGLUND. 1997. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution 206: 393-410.
32. ROBINSON, H. 1981. A revision of the tribal and subtribal limits of the Heliantheae (Asteraceae). Smithsonian Contributions to Botany 51: 1-102.
33. SAGHAI-MAROOF, M. A., K. M. SOLIMAN, and R. A. JORGENSEN. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. Proceedings of the National Academy of Sciences U.S.A. 81: 8014-8018.
34. SANG, T., D. J. CRAWFORD, and T. F. STUESSY. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136.
35. SIMMONS, M. P. and H. OCHOTERENA. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
36. SMALL, R. L., J. A. RYBURN, R. C. CRONN, T. SEELANAN, and J. F. WENDEL. 1998. The tortoise and the hare: Choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. American Journal of Botany 85: 1301-1315.
37. STRALEY, G. B. 1980. Systematics of Arnica, subgenus Austromontana and a new subgenus Calarnica (Asteraceae: Senecioneae). Ph.D. Dissertation, University of British Columbia.
38. STROTHER, J. L. and S. J. WOLF. 2006. Arnica lanceolata subsp. prima, the correct name for Arnica lanceolata Nuttall subsp. amplexicaulis (Nuttall) Gruezo (Asteraceae, Heliantheae). Novon 16: 138.
39. SWOFFORD, D. L. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland: Sinauer Associates.
40. TABERLET, P., L. GIELLY, G. PAUTOU, and J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1110.
41. TATE, J. A. and B. B. SIMPSON. 2003. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. Systematic Botany 28: 723-737.
42. TURNER, B. L. and A. M. POWELL. 1977. Helenieae-Systematic review. Pp. 669-737 in The Biology and Chemistry of the Compositae, vol. II, eds. V. H. Heywood, J. B. Harborne, and B. L. Turner. London: Academic Press.
43. URBATSCH, L. E., B. G. BALDWIN, and M. J. DONOGHUE. 2000. Phylogeny of the coneflowers and relatives (Heliantheae: Asteraceae) based on nuclear rDNA internal transcribed spacer (ITS) sequences and chloroplast DNA restriction site data. Systematic Botany 25: 539-565.
44. WHITE, T. J., T. BRUNS, S. LEE, and J. TAYLOR. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in PCR Protocols: A Guide to Methods and Applications, eds. M. Innis, D. Gelfand, J. Sninsky, and T. J. White. San Diego: Academic Press.
45. WILLUHN, G., I. MERFORT, C. M. PASSREITER, and T. J. SCHMIDT. 1995. Chemistry and systematics of the genus Arnica. Pp. 167-195 in Advances in Compositae Systematics, eds. D. J. N. Hind, C. Jeffrey, and G. V. Pope. Kew: The Royal Botanic Gardens.
46. WOLF, S. J. 1980. Cytographical studies in the genus Arnica (Compositae: Senecioneae) 1. American Journal of Botany 67: 300-308.
47. _. 2006. Arnica. In Flora of North America North of Mexico, vol. 21 (Asteraceae, part 3). New York: Oxford University Press.
48. _ and K. E. DENFORD. 1984a. Taxonomy of Arnica (Compositae) subgenus Austromontana. Rhodora 86: 239-310.
49. _ and _. 1984b. Arnica gracilis (Compositae), a natural hybrid between A. latifolia and A. cordifolia. Systematic Botany 9: 12-16.
50. _ and R. WHITKUS. 1987. A numerical analysis of flavonoid variation in Arnica subgenus Austromontana Asteraceae. American Journal of Botany 74: 1577-1584.
51. XU, D. H., J. ABE, M. SAKAI, A. KANAZAWA, and Y. SHIMAMOTO. 2000. Sequence variation of non-coding regions of chloroplast DNA of soybean and related wild species and its implications for the evolution of different chloroplast haplotypes. Theoretical and Applied Genetics 101: 724-732.