Genetic structure of Phaeosphaeria nodorum populations in the north-central and midwestern United States

Phytopathology

Volumn 98, Issue 1, 2008, Pages 101-107

  Adhikari, T B ^a   Ali, S ^a   Burlakoti, R R ^a   Singh, P K ^a   Mergoum, M ^a   Goodwin, S B ^b  

^a NORTH DAKOTA STATE UNIVERSITY   (United States)

^b PURDUE UNIVERSITY   (United States)

Author keywords

Genetic diversity; Multilocus analysis; Population genetics; Septoria nodorum

Indexed keywords

ARTICLE; ASCOMYCETES; GENETIC VARIABILITY; GENETICS; MICROBIOLOGY; PLANT DISEASE; UNITED STATES; WHEAT;

ASCOMYCOTA; GENETIC VARIATION; PLANT DISEASES; TRITICUM; UNITED STATES;

BACTERIA (MICROORGANISMS); FUNGI; PHAEOSPHAERIA NODORUM; TRITICUM AESTIVUM;

EID: 38349073611     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-98-1-0101     Document Type: Article

References (49)

1. Agapow, P. M., and Burt, A. 2001. Indices of multilocus linkage disequilibrium. Mol. Ecol. Notes 1:101-102.
2. Bathgate, J. A., and Loughman, R. 2001. Ascospores are a source of inoculum of Phaeosphaeria nodorum, P. avenaria f. sp. avenaria and Mycosphaerella graminicola in Western Australia. Australas. Plant Pathol. 30:317-322.
3. Bennett, R. S., Milgroom, M. G., and Bergstrom, G. C. 2005. Population structure of seedborne Phaeosphaeria nodorum on New York wheat. Phytopathology 95:300-305.
4. Bennett, R. S., Milgroom, M. G., Sainudiin, R., Cunfer, B. M., and Bergstrom, G. C. 2007. Relative contribution of seed-transmitted inoculum to foliar populations of Phaeosphaeria nodorum. Phytopathology 97:584-591.
5. Bennett, R. S., Yun, S. H., Lee, T. Y., Turgeon, B. G., Arseniuk, E., Cunfer, B. M., and Bergstrom, G. C. 2003. Identity and conservation of mating type genes in geographically diverse isolates of Phaeosphaeria nodorum. Fungal Genet. Biol. 40:25-37.
6. Boeger, J. M., Chen, R. S., and McDonald, B. A. 1993. Gene flow between geographic populations of Mycosphaerella graminicola (anamorph Septoria tritici) detected with restricted fragment length polymorphism markers. Phytopathology 83:1148-1154.
7. Brennan, R. M., Fitt, B. D. L., Taylor, G. S., and Coulhoun, J. 1985. Dispersal of Septoria nodorum pycnidiospores by simulated rain and wind. Phytopathol. Z. 112:291-297.
8. Brown, A. H. D., Feldman, M. W., and Nevo, E. 1980. Multilocus structure of natural populations of Hordeum spontaneum. Genetics 96:523-536.
9. Cowger, C., and Silva-Rojas, H. V. 2006. Frequency of Phaeosphaeria nodorum, the sexual stage of Stagonospora nodorum, on winter wheat in North Carolina. Phytopathology 96:860-866.
10. Czembor, P. C. and Arseniuk, E. 1999. Study of genetic variability among monopycnidial and monopycnidiospore isolates derived from single pycnidia of Stagonospora spp. and Septoria tritici with the use of RAPD-PCR. MP-PCR and rep-PCR techniques. J. Phytopathol. 147:539-546.
11. Demeke, T., Clear, R. M., Patrick, S. K., and Gaba, D. 2005. Species-specific PCR-based assays for the detection of Fusarium species and a comparison with the whole seed agar plate method and trichothecene analysis. Int. J. Food Microbiol. 103:271-284.
12. Dhingra, O. D., and Sinclair, J. B. 1985. Basic Plant Pathology Methods. CRC Press, Boca Raton, FL.
13. Dobrowolski, M. P., Tommerup, I. C., Shearer, B. L., and O'Brien, P. A. 2003. Three clonal lineages of Phytophthora cinnamomi in Australia revealed by microsatellites. Phytopathology 93:695-704.
14. Everitt, B. S. 1977. Pages 1-37 in: The Analysis of Contingency Tables. Wiley, New York.
15. Eyal, Z. 1999. Septoria and Stagonospora diseases of cereals: A comparative perspective. Pages 1-25 in: Septoria on Cereals: A Study of Pathosystems. J. A. Lucas, P. Bowyer, and H. M. Anderson, eds. IACR Long Ashton Research Station, Bristol, UK.
16. Eyal, Z., Scharen, A. L., Prescott, J. M., and van Ginkel, M. 1987. The Septoria Disease of Wheat: Concepts and Methods of Disease Management. CIMMYT, Mexico, D.F.
17. Feau, N., Hamelin, R. C., Vandecasteele, C., Stanosz, G. R., and Bernier, L. 2005. Genetic structure of Mycosphaerella populorum (anamorph Septoria musiva) populations in north-central and northeastern North America. Phytopathology 95:608-616.
18. Friesen, T. L., Stukenbrock, E. H., Liu, Z., Meinhardt, S., Ling, H., Faris, J. D., Rasmussen, J. B., Solomon, P. S., McDonald, B. A., and Oliver, R. P. 2006. Emergence of a new disease as result of inter-specific virulence gene transfer. Nat. Genet. 38:953-956.
19. Frohberg, R. C., Stack, R. W., Olson, T., Miller, J. D. and Mergoum, M. 2006. Registration of 'Alsen' wheat. Crop Sci. 46:2311-2312.
20. Goodwin, S. B., van der Lee, T. A. J., Cavaletto, J. R., te Lintel-Hekkert, B., Crane, C. F., and Kema, G. H. J. 2007. Identification and genetic mapping of highly polymorphic microsatellite loci from an EST database of the septoria tritici blotch pathogen Mycosphaerella graminicola. Fungal Genet. Biol. 44:398-414.
21. Halama, P. 2002. Mating relationship between isolates of Phaeosphaeria nodorum (anamorph Stagonospora nodorum) from geographical locations. Eur. J. Plant Pathol. 108:593-596.
22. Hayden, H. L., and Howlett, B. J. 2005. Genetic structure of a population of the fungus Leptosphaeria maculans in a disease nursery of Brassica in Australia. Curr. Genet. 48:142-149.
23. Keller, S. M., McDermott, J. M., Pettway, R. E., Wolfe, M. S., and McDonald, B. A. 1997. Gene flow and sexual reproduction in the wheat glume blotch pathogen Phaeosphaeria nodorum (anamorph Stagonospora nodorum). Phytopathology 87:353-358.
24. Keller, S. M., Wolfe, M. S., McDermott, J. M., and McDonald, B. A. 1997. High genetic similarity among populations of Phaeosphaeria nodorum across wheat cultivars and regions in Switzerland. Phytopathology 87:1134-1139.
25. King, J. E., Cook, R. J., and Melville, S. C. 1983. A review of Septoria diseases of wheat and barley. Ann. Appl. Biol. 103:345-373.
26. Lees, A. K., Wattier, R., Shaw, D. S., Sullivan, L., Williams, N. A., and Cooke, D. E. L. 2006. Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology 55:311-319.
27. McDonald, B. A. 1997. The population genetics of fungi: Tools and techniques. Phytopathology 87:448-453.
28. McDonald, B. A., Miles, J., Nelson, L. R., and Pettway, R. E. 1994. Genetic variability in nuclear DNA in field populations of Stagonospora nodorum. Phytopathology 84:250-255.
29. Milgroom, M. G., and Lipari, S. E. 1995. Population differentiation in the chestnut blight fungus, Cryphonectria parasitica, in eastern North America. Phytopathology 85:155-160.
30. Milgroom, M. G. 1996. Recombination and the multilocus structure of fungal populations. Annu. Rev. Phytopathol. 34:457-477.
31. Murphy, N. E., Loughman, R., Appels, R., Lagudah, E. S., and Jones, M. G. K. 2000. Genetic variability in a collection of Stagonospora nodorum isolates from Western Australia. Aust. J. Agric. Res. 51:679-684.
32. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70:3321-3323.
33. Nei, M. 1978. Estimation of average heterogygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
34. Peakall, R., and Smouse, P. E. 2006. GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol. Eco. Notes 6:288-295.
35. Razavi, M., and Hughes, G. R. 2004. Microsatellite markers provide evidence for sexual reproduction of Mycosphaerella graminicola in Saskatchewan. Genome 47:789-794.
36. Shah, D. A., and Bergstrom, G. C. 1993. Assessment of seed-borne Stagonospora nodorum in New York soft winter wheat. Plant Dis. 77:468-471.
37. Shah, D. A., Bergstrom, G. C., and Ueng, P. P. 2001. Foci of Stagonospora nodorum blotch in winter wheat before canopy development. Phytopathology 91:642-647.
38. Shaner, G. 1981. Effect of environment on fungal leaf blights of small grains. Annu. Rev. Phytopathol. 19:273-296.
39. Shaw, M. W. 1999. Epidemiology of Mycosphaerella graminicola and Phaeosphaeria nodorum: An overview. Pages 93-97 in: Septoria and Stagonospora Diseases of Cereals: A Compilation of Global Research. M. van Ginkel, A. McNab, and J. Krupinsky, eds. CIMMYT, Mexico, D.F.
40. Shi, J., Ward, R., Wang, D., and Lewis, J. 2001. Application of a high throughput, low cost, non-denaturing Polyacrylamide gel system for wheat microsatellite mapping. Pages 25-30 in: National Fusarium Head Blight Forum. S. M. Canty, J. Lewis, L. Silver, and R. W. Ward, eds. Kinko's Publisher, Okemos, MI.
41. Solomon, P. S., Parker, K., Loughman, R., and Oliver, R. P. 2004. Both mating types of Phaeosphaeria (anamorph Stagonospora) nodorum are present in Western Australia. Eur. J. Plant Pathol. 110:763-766.
42. Sommerhaider, R. J., McDonald, B. A., and Zhan, J. 2006. The frequencies and spatial distribution of mating types in Stagonospora nodorum are consistent with recurring sexual reproduction. Phytopathology 96:234-239.
43. Stergiopoulos, I., Zwiers, L.-H., and De Waard, M. A. 2003. The ABC transporter MgAtr4 is a virulence factor of Mycosphaerella graminicola that affects colonization of substomatal cavities in wheat leaves. Mol. Plant-Microbe Interact. 16:689-698.
44. Stukenbrock, E. H., Banke, S., and McDonald, B. A. 2006. Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum. Mol. Ecol. 15:2895-2904.
45. Stukenbrock, E. H., Banke, S., Zala, M., McDonald, B. A., and Oliver, R. P. 2005. Isolation and characterization of EST-derived microsatellite loci from the fungal wheat pathogen Phaeosphaeria nodorum. Mol. Ecol. Notes 5:931-933.
46. Tenzer, I., delgli Ivanissevich, S., Morgante, M., and Gessler, C. 1999. Identification of microsatellite markers and their application to population genetics of Venturia inaequalis. Phytopathology 89:748-753.
47. Ueng, P. P., Bergstrom, G. C., Slay, R. M., Geiger, E. A., Shaner, G., and Scharen, A. L. 1992. Restriction fragment length polymorphisms in the wheat glume blotch fungus, Phaeosphaeria nodorum. Phytopathology 82:1302-1305.
48. Vergnes, D. M., Zhanarbekova, A., Renard, M.-E., Duveiller, E., and Maraite, H. 2006. Mating types of Phaeosphaeria nodorum (anamorph Stagonospora nodorum) from central Asia. J. Phytopathol. 154:317-319.
49. Zhan, J., Pettway, R. E., and McDonald, B. A. 2003. The global genetic structure of the wheat pathogen Mycosphaerella graminicola is characterized by high nuclear diversity, regular recombination, and gene flow. Fungal Genet. Biol. 38:286-297.