Detection and characterization of a functional insertion sequence, ISVpa2, in Vibrio parahaemolyticus

Gene

Volumn 409, Issue 1-2, 2008, Pages 92-99

  Kamruzzaman, Muhammad ^a   Nishibuchi, Mitsuaki ^a  

^a KYOTO UNIVERSITY   (Japan)

Author keywords

Chromosome walking; Genetic rearrangement; Transposase; Vibrio penaeicida; Vibrio splendidus; Vibrio vulnificus

Indexed keywords

HELIX LOOP HELIX PROTEIN; LEUCINE ZIPPER PROTEIN;

AMPLICON; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM CULTURE; DNA SEQUENCE; GENE; GENE DELETION; GENE DUPLICATION; GENE INACTIVATION; GENE INSERTION; GENE REARRANGEMENT; GENE SEQUENCE; GENE STRUCTURE; GENE TARGETING; HYBRIDIZATION; INVERTED REPEAT; IS3 GENE; ISVPA2 GENE; MARKER GENE; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; ORFA GENE; ORFB GENE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN MOTIF; SOUTHERN BLOTTING; VIBRIO PARAHAEMOLYTICUS; VIBRIO PENAEICIDA; VIBRIO SPLEDIDUS; VIBRIO VULNIFICUS;

AMINO ACID SEQUENCE; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY; VIBRIO PARAHAEMOLYTICUS;

VIBRIO; VIBRIO PARAHAEMOLYTICUS; VIBRIO PENAEICIDA; VIBRIO SPLENDIDUS; VIBRIO VULNIFICUS;

EID: 38349022287     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.11.012     Document Type: Article

References (23)

1. Bik E.M., Gouw R.D., and Mooi F.R. DNA fingerprinting of Vibrio cholerae strains with a novel insertion sequence element: a tool to identify epidemic strains. J. Clin. Microbiol. 34 (1996) 1453-1462
2. Chowdhury A., et al. Emergence and serovar transition of Vibrio parahaemolyticus pandemic strains isolated during a diarrhea outbreak in Vietnam between 1997 and 1999. Microbiol. Immunol. 48 (2004) 319-327
3. In: Craig N.C., Craigie R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), ASM Press, Washington, DC
4. Dumontier S., Trieu-Cuot P., and Berche P. Structural and functional characterization of IS1358 from Vibrio cholerae. J. Bacteriol. 180 (1998) 6101-6106
5. Haren L., Normand C., Polard P., Alazard R., and Chandler M. IS911 transposition is regulated by protein-protein interactions via a leucine zipper motif. J. Mol. Biol. 296 (2000) 757-768
6. Iida T., Hattori A., Tagomori K., Nasu H., Naim R., and Honda T. Filamentous phage associated with recent pandemic strains of Vibrio parahaemolyticus. Emerg. Infect. Dis. 7 (2001) 477-478
7. Jedani K.E., Stroeher U.H., and Manning P.A. Distribution of IS1358 and linkage to rfb-related genes in Vibrio anguillarum. Microbiology 146 (2000) 323-331
8. Karaolis D.K.R., Johnson J.A., Bailey C.C., Boedeker E.C., Kaper J.B., and Reeves P.R. A Vibrio cholerae pathogenicity island associated with epidemic and pandemic strains. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 3134-3139
9. Loot C., Turlan C., Rousseau P., Ton-Hoang B., and Chandler M. A target specificity switch in IS911 transposition: the role of the OrfA protein. EMBO J. 21 (2002) 4172-4182
10. Mahillon J., and Chandler M. Insertion sequences. Microbiol. Mol. Biol. Rev. 62 (1998) 725-774
11. Makino K., et al. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae. Lancet 361 (2003) 743-749
12. In: Maniatis T., Fritsch E.F., and Sambrook J. (Eds). Molecular Cloning: A Laboratory Manual. 2nd ed. (1982), Cold Spring Harbor, NY
13. Matsumoto C., et al. Pandemic spread of an O3:K6 clone of Vibrio parahaemolyticus and emergence of related strains evidenced by arbitrarily primed PCR and toxRS sequence analyses. J. Clin. Microbiol. 38 (2000) 578-585
14. Nishibuchi M. Molecular identification. In: Thompson F.L., Austin B., and Swings J. (Eds). The Biology of Vibrios (2006), ASM Press, Wasington, D.C. 44-64
15. Nishibuchi M., Kumagai K., and Kaper J.B. Contribution of the tdh1 gene of Kanagawa phenomenon-positive Vibrio parahaemolyticus to production of extracellular thermostabe direct hemolysin. Microb. Pathog. 11 (1991) 453-460
16. Okura M., et al. PCR-based identification of pandemic group Vibrio parahaemolyticus with a novel group-specific primer pair. Microbiol. Immunol. 48 (2004) 787-790
17. Okura M., Osawa R., Arakawa E., Terajima J., and Watanabe H. Identification of Vibrio parahaemolyticus pandemic group-specific DNA sequence by genomic subtraction. J. Clin. Microbiol. 43 (2005) 3533-3536
18. Rousseau P., Gueguen E., Duval-Valentin G., and Chandler M. The helix-turn-helix motif of bacterial insertion sequence IS911 transposase is required for DNA binding. Nucleic Acids Res. 32 (2004) 1335-1344
19. Siguier P., Perochon J., Lestrade L., Mahillon J., and Chandler M. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34 (2006) D32-D36 10.1093/nar/gkj014
20. Smith A.B., and Siebeling R.J. Identification of genetic loci required for capsular expression in Vibrio vulnificus. Infect. Immun. 71 (2003) 1091-1097
21. Tan G., et al. SiteFinding-PCR: a simple and efficient PCR method for chromosome walking. Nucleic Acids Res. 33 (2005) e122
22. Terai A., Baba K., Shirai H., Yoshida O., Takeda Y., and Nishibuchi M. Evidence for insertion sequence-mediated spread of the thermostable direct hemolysin gene among Vibrio species. J. Bacteriol. 173 (1991) 5036-5046
23. Tolmasky M.E., and Crosa J.H. Iron transport genes of the pJM1-mediated iron uptake system of Vibrio anguillarum are included in a transposonlike structure. Plasmid 33 (1995) 180-190