메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

BMDExpress: A software tool for the benchmark dose analyses of genomic data

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANALYSIS OF VARIANCE; ARTICLE; COMPUTER PROGRAM; DOSE RESPONSE; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HUMAN; MICROARRAY ANALYSIS; MOLECULAR BIOLOGY; NONHUMAN; QUALITY CONTROL; QUANTITATIVE ANALYSIS; SIGNAL TRANSDUCTION; STATISTICAL MODEL; STEP WISE MULTIPLE REGRESSION; ANIMAL; DNA MICROARRAY; DRUG EFFECT; GENOME; ZEBRA FISH;

EID: 38149075215     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-8-387     Document Type: Article
Times cited : (165)

References (32)
  • 1
    • 33846300352 scopus 로고    scopus 로고
    • Morpheus unbound: Reimagining the morphogen gradient
    • 17254964 10.1016/j.cell.2007.01.004
    • Lander AD Morpheus unbound: Reimagining the morphogen gradient Cell 2007, 128:245-256. 17254964 10.1016/j.cell.2007.01.004
    • (2007) Cell , vol.128 , pp. 245-256
    • Lander, A.D.1
  • 2
    • 31944438744 scopus 로고    scopus 로고
    • Oxygen: Modulator of physiological and pathophysiological processes in the liver
    • 16397842 10.1055/s-2005-858987
    • Kietzmann T Dimova EY Flugel D Scharf JG Oxygen: Modulator of physiological and pathophysiological processes in the liver Zeitschrift fur Gastroenterologie 2006, 44:67-76. 16397842 10.1055/s-2005-858987
    • (2006) Zeitschrift Fur Gastroenterologie , vol.44 , pp. 67-76
    • Kietzmann, T.1    Dimova, E.Y.2    Flugel, D.3    Scharf, J.G.4
  • 3
    • 0032879627 scopus 로고    scopus 로고
    • Basic therapy for rheumatoid arthritis: Nonsteroidal anti-inflammatory drugs
    • 10520445
    • Daoud KF Jackson CG Williams HJ Basic therapy for rheumatoid arthritis: nonsteroidal anti-inflammatory drugs Compr Ther 1999, 25(8-10):427-433. 10520445
    • (1999) Compr Ther , vol.25 , Issue.8-10 , pp. 427-433
    • Daoud, K.F.1    Jackson, C.G.2    Williams, H.J.3
  • 5
    • 3142665525 scopus 로고    scopus 로고
    • GOstat: Find statistically overrepresented Gene Ontologies within a group of genes
    • 14962934 10.1093/bioinformatics/bth088
    • Beissbarth T Speed TP GOstat: Find statistically overrepresented Gene Ontologies within a group of genes Bioinformatics 2004, 20:1464-1465. 14962934 10.1093/bioinformatics/bth088
    • (2004) Bioinformatics , vol.20 , pp. 1464-1465
    • Beissbarth, T.1    Speed, T.P.2
  • 7
    • 3242887152 scopus 로고    scopus 로고
    • Onto-Tools: An ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
    • 15215428 10.1093/nar/gkh409 441547
    • Khatri P Bhavsar P Bawa G Draghici S Onto-Tools: An ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments Nucleic Acids Res 2004, 32:W449-456. 15215428 10.1093/nar/gkh409 441547
    • (2004) Nucleic Acids Res , vol.32
    • Khatri, P.1    Bhavsar, P.2    Bawa, G.3    Draghici, S.4
  • 8
    • 2942550697 scopus 로고    scopus 로고
    • GOTree Machine (GOTM): A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies
    • 14975175 10.1186/1471-2105-5-16 373441
    • Zhang B Schmoyer D Kirov S Snoddy J GOTree Machine (GOTM): A web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies BMC Bioinformatics 2004, 5:16. 14975175 10.1186/ 1471-2105-5-16 373441
    • (2004) BMC Bioinformatics , vol.5 , pp. 16
    • Zhang, B.1    Schmoyer, D.2    Kirov, S.3    Snoddy, J.4
  • 9
    • 24644470505 scopus 로고    scopus 로고
    • Ontological analysis of gene expression data: Current tools, limitations, and open problems
    • 15994189 10.1093/bioinformatics/bti565
    • Khatri P Draghici S Ontological analysis of gene expression data: current tools, limitations, and open problems Bioinformatics 2005, 21:3587-3595. 15994189 10.1093/bioinformatics/bti565
    • (2005) Bioinformatics , vol.21 , pp. 3587-3595
    • Khatri, P.1    Draghici, S.2
  • 10
    • 0037293075 scopus 로고    scopus 로고
    • Global functional profiling of gene expression
    • 12620386 10.1016/S0888-7543(02)00021-6
    • Draghici S Khatri P Martins RP Ostermeier GC Krawetz SA Global functional profiling of gene expression Genomics 2003, 81:98-104. 12620386 10.1016/S0888-7543(02)00021-6
    • (2003) Genomics , vol.81 , pp. 98-104
    • Draghici, S.1    Khatri, P.2    Martins, R.P.3    Ostermeier, G.C.4    Krawetz, S.A.5
  • 11
    • 0032459877 scopus 로고    scopus 로고
    • Dose-response characteristics of uterine responses in rats exposed to estrogen agonists
    • 9927563 10.1006/rtph.1998.1244
    • Barton HA Andersen ME Allen BC Dose-response characteristics of uterine responses in rats exposed to estrogen agonists Regul Toxicol Pharmacol 1998, 28:133-149. 9927563 10.1006/rtph.1998.1244
    • (1998) Regul Toxicol Pharmacol , vol.28 , pp. 133-149
    • Barton, H.A.1    Andersen, M.E.2    Allen, B.C.3
  • 12
    • 77957180789 scopus 로고
    • A new method for determining allowable daily intakes
    • 6510615 10.1016/0272-0590(84)90107-6
    • Crump KS A new method for determining allowable daily intakes Fundam Appl Toxicol 1984, 4:854-871. 6510615 10.1016/0272-0590(84)90107-6
    • (1984) Fundam Appl Toxicol , vol.4 , pp. 854-871
    • Crump, K.S.1
  • 13
    • 0028898956 scopus 로고
    • Calculation of benchmark dose from continuous data
    • 10.1111/j.1539-6924.1995.tb00095.x
    • Crump KS Calculation of benchmark dose from continuous data Risk Anal 1995, 15:79-89. 10.1111/j.1539-6924.1995.tb00095.x
    • (1995) Risk Anal , vol.15 , pp. 79-89
    • Crump, K.S.1
  • 14
    • 0003788952 scopus 로고
    • EPA Washington, D.C.: Office of Research and Development, U.S. Environmental Protection Agency 7549872
    • EPA The Use of the Benchmark Dose Approach in Health Risk Assessment Washington, D.C.: Office of Research and Development, U.S. Environmental Protection Agency 1995. 7549872
    • (1995) The Use of the Benchmark Dose Approach in Health Risk Assessment
  • 15
    • 0028147845 scopus 로고
    • Summary of the workshop on issues in risk assessment: Quantitative methods for developmental toxicology
    • 7972960 10.1111/j.1539-6924.1994.tb00273.x
    • Mattison DR Sandler JD Summary of the workshop on issues in risk assessment: Quantitative methods for developmental toxicology Risk Anal 1994, 14:595-604. 7972960 10.1111/j.1539-6924.1994.tb00273.x
    • (1994) Risk Anal , vol.14 , pp. 595-604
    • Mattison, D.R.1    Sandler, J.D.2
  • 16
    • 34447555919 scopus 로고    scopus 로고
    • A method to integrate benchmark dose estimates with genomic data to assess the functional effects of chemical exposure
    • 17449896 10.1093/toxsci/kfm092
    • Thomas RS Allen BC Nong A Yang L Bermudez E Clewell HJ 3rd Andersen ME A method to integrate benchmark dose estimates with genomic data to assess the functional effects of chemical exposure Toxicol Sci 2007, 98:240-248. 17449896 10.1093/toxsci/kfm092
    • (2007) Toxicol Sci , vol.98 , pp. 240-248
    • Thomas, R.S.1    Allen, B.C.2    Nong, A.3    Yang, L.4    Bermudez, E.5    Clewell III, H.J.6    Andersen, M.E.7
  • 20
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Series B
    • Benjamini Y Hochberg Y Controlling the false discovery rate: A practical and powerful approach to multiple testing Journal of the Royal Statistical Society, Series B 1995, 57:289-300.
    • (1995) Journal of the Royal Statistical Society , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 21
    • 0142010683 scopus 로고    scopus 로고
    • The benchmark dose method - Review of available models, and recommendations for application in health risk assessment
    • 14594105
    • Filipsson AF Sand S Nilsson J Victorin K The benchmark dose method - review of available models, and recommendations for application in health risk assessment Crit Rev Toxicol 2003, 33:505-542. 14594105
    • (2003) Crit Rev Toxicol , vol.33 , pp. 505-542
    • Filipsson, A.F.1    Sand, S.2    Nilsson, J.3    Victorin, K.4
  • 22
    • 0000501656 scopus 로고
    • Information theory and an extension of the maximum likelihood principle
    • Akaike H Information theory and an extension of the maximum likelihood principle 2nd International Symposium on Information Theory 1973, 267-281.
    • (1973) 2nd International Symposium on Information Theory , pp. 267-281
    • Akaike, H.1
  • 23
    • 33747798696 scopus 로고    scopus 로고
    • Hepatic gene expression profiling using Genechips in zebrafish exposed to 17alpha-ethynylestradiol
    • 10.1016/j.aquatox.2006.06.009 16872691
    • Hoffmann JL Torontali SP Thomason RG Lee DM Brill JL Price BB Carr GJ Versteeg DJ Hepatic gene expression profiling using Genechips in zebrafish exposed to 17alpha-ethynylestradiol Aquat Toxicol 2006, 79(3):233-246. 10.1016/j.aquatox.2006.06.009 16872691
    • (2006) Aquat Toxicol , vol.79 , Issue.3 , pp. 233-246
    • Hoffmann, J.L.1    Torontali, S.P.2    Thomason, R.G.3    Lee, D.M.4    Brill, J.L.5    Price, B.B.6    Carr, G.J.7    Versteeg, D.J.8
  • 25
    • 2542499748 scopus 로고    scopus 로고
    • Vitellogenin induction as a biomarker of exposure to estrogenic compounds in aquatic environments
    • 15111030 10.1016/j.marpolbul.2004.02.037
    • Marin MG Matozzo V Vitellogenin induction as a biomarker of exposure to estrogenic compounds in aquatic environments Marine pollution bulletin 2004, 48:835-839. 15111030 10.1016/j.marpolbul.2004.02.037
    • (2004) Marine Pollution Bulletin , vol.48 , pp. 835-839
    • Marin, M.G.1    Matozzo, V.2
  • 26
    • 13544271971 scopus 로고    scopus 로고
    • Hormonal control of protein glycosylation: Role of steroids and related lipophilic ligands
    • 15497930
    • Medvedová L Farkas R Hormonal control of protein glycosylation: role of steroids and related lipophilic ligands Endocr Regul 2004, 38(2):65-79. 15497930
    • (2004) Endocr Regul , vol.38 , Issue.2 , pp. 65-79
    • Medvedová, L.1    Farkas, R.2
  • 28
    • 0015131905 scopus 로고
    • The crystalline yolk-platelet proteins and their soluble plasma precursor in an amphibian, Xenopus laevis
    • 1177252 5131731
    • Redshaw MR Follett BK The crystalline yolk-platelet proteins and their soluble plasma precursor in an amphibian, Xenopus laevis Biochem J 1971, 124(4):759-766. 1177252 5131731
    • (1971) Biochem J , vol.124 , Issue.4 , pp. 759-766
    • Redshaw, M.R.1    Follett, B.K.2
  • 29
    • 0020028071 scopus 로고
    • Intracellular glycosylation of vitellogenin in the liver of estrogen-stimulated Xenopus laevis
    • 7053388
    • Gottlieb TA Wallace RA Intracellular glycosylation of vitellogenin in the liver of estrogen-stimulated Xenopus laevis J Biol Chem 1982, 257(1):95-103. 7053388
    • (1982) J Biol Chem , vol.257 , Issue.1 , pp. 95-103
    • Gottlieb, T.A.1    Wallace, R.A.2
  • 30
    • 0031451264 scopus 로고    scopus 로고
    • Isolation and characterization of the female-specific protein (vitellogenin) in mature female hemolymph of the freshwater prawn, Macrobrachium rosenbergii: Comparison with ovarian vitellin
    • 10.1006/gcen.1997.6989
    • Lee FY Shih TW Chang CF Isolation and characterization of the female-specific protein (vitellogenin) in mature female hemolymph of the freshwater prawn, Macrobrachium rosenbergii: Comparison with ovarian vitellin General and comparative endocrinology 1997, 108:406-415. 10.1006/gcen.1997.6989
    • (1997) General and Comparative Endocrinology , vol.108 , pp. 406-415
    • Lee, F.Y.1    Shih, T.W.2    Chang, C.F.3
  • 31
    • 4444247914 scopus 로고    scopus 로고
    • Structural characterization of the N-glycan moiety and site of glycosylation in vitellogenin from the decapod crustacean Cherax quadricarinatus
    • 15175255 10.1093/glycob/cwh105
    • Khalaila I Peter-Katalinic J Tsang C Radcliffe CM Aflalo ED Harvey DJ Dwek RA Rudd PM Sagi A Structural characterization of the N-glycan moiety and site of glycosylation in vitellogenin from the decapod crustacean Cherax quadricarinatus Glycobiology 2004, 14:767-774. 15175255 10.1093/glycob/cwh105
    • (2004) Glycobiology , vol.14 , pp. 767-774
    • Khalaila, I.1    Peter-Katalinic, J.2    Tsang, C.3    Radcliffe, C.M.4    Aflalo, E.D.5    Harvey, D.J.6    Dwek, R.A.7    Rudd, P.M.8    Sagi, A.9
  • 32
    • 0030787747 scopus 로고    scopus 로고
    • Gene activation, apolipoprotein A-I/high density lipoprotein, atherosclerosis prevention and longevity
    • 9298501
    • Luoma PV Gene activation, apolipoprotein A-I/high density lipoprotein, atherosclerosis prevention and longevity Pharmacol Toxicol 1997, 81(2):57-64. 9298501
    • (1997) Pharmacol Toxicol , vol.81 , Issue.2 , pp. 57-64
    • Luoma, P.V.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.