Sub-grid detection in DNA microarray images

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 4872 LNCS, Issue , 2007, Pages 248-259

  Rueda, Luis ^a  

^a UNIVERSITY OF CONCEPCIÓN   (Chile)

Author keywords

Image analysis; Image feature and detectors; Microarray image gridding

Indexed keywords

DNA; IMAGE ANALYSIS; MICROARRAYS;

IMAGE FEATURE; MICROARRAY IMAGE GRIDDING;

FEATURE EXTRACTION;

EID: 38149035079     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-77129-6_24     Document Type: Conference Paper

References (17)

1. Drǎghici, S.: Data Analysis Tools for DNA Microarrays. Chapman & Hall (2003)
2. Schena, M.: Microarray Analysis. John Wiley & Sons, Chichester (2002)
3. Antoniol, G., Ceccarelli, M.: A markov random field approach to microarray image gridding. In: Proceedings of the 17th International Conference on Pattern Recognition, Cambridge, UK, pp. 550-553 (2004)
4. Brandle, N., Bischof, H., Lapp, H.: Robust dna microarray image analysis. Machine Vision and Applications 15, 11-28 (2003)
5. Ceccarelli, B., Antoniol, G.: A deformable grid-matching approach for microarray images. IEEE Transactions on Image Processing 15(10), 3178-3188 (2006)
6. Qi, F., Luo, Y., Hu, D.: Recognition of perspectively distorted planar grids. Pattern Recognition Letters 27(14), 1725-1731 (2006)
7. Rueda, L., Vidyadharan, V.: A hill-climbing approach for automatic gridding of cdna microarray images. IEEE Transactions on Computational Biology and Bioinformatics 3(1), 72-83 (2006)
8. Jain, A., Tokuyasu, T., Snijders, A., Segraves, R., Albertson, D., Pinkel, D.: Fully automatic quantification of microarray data. Genome Research 12(2), 325-332 (2002)
9. Noordmans, H., Smeulders, A.: Detection and characterization of isolated and overlapping spots. Computer Vision and Image Understandigng 70(1), 23-35 (1998)
10. Katzer, M., Kummer, F., Sagerer, G.: A markov random field model of microarray gridding. In: Proceedings of the 2003 ACM Symposium on Applied Computing, pp. 72-77 (2003)
11. Angulo, J., Serra, J.: Automatic analysis of dna microarray images using mamematicalmorphology. Bioinformatics 19(5), 553-562 (2003)
12. Katzer, M., Kummert, F., Sagerer, G.: Automatische auswertung von rnikroarraybildern. In: Proceedings of Workshop Bildverarbeitung für die Medizin, Cambridge, UK (2002)
13. Steinfath, M., Wruck, W., Seidel, H.: Automated image analysis for array hybridization experiments. Bioinformatics 17(7), 634-641 (2001)
14. Wang, Y., Ma, M., Zhang, K., Shih, F.: A hierarchical refinement algorithm for fully automatic gridding in spotted dna microarray image processing. Information Sciences 177(4), 1123-1135 (2007)
15. Wang, Y., Shih, F., Ma, M.: Precise gridding of microarray images by detecting and correcting rotations in subarrays. In: Proceedings of the 8th Joint Conference on Information Sciences, Salt Lake City, USA, pp. 1195-1198 (2005)
16. Helgason, S.: The Radon Transform, 2nd edn. Springer, Heidelberg (1999)
17. Qin, L., Rueda, L., Ali, A., Ngom, A.: Spot detection and image segmentation in dna microarray data. Applied Bioinformatics 4(1), 1-12 (2005)