A Markov random field model of microarray gridding

Proceedings of the ACM Symposium on Applied Computing

Volumn , Issue , 2003, Pages 72-77

  Katzer, Mathias ^a   Kummert, Franz ^a   Sagerer, Gerhard ^a  

^a BIELEFELD UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; COMPUTATIONAL METHODS; COMPUTER SOFTWARE; CONSTRAINT THEORY; DNA; FLUORESCENCE; GENETIC ENGINEERING; HEURISTIC METHODS;

MICROARRAY GRIDDING;

COMPUTER SCIENCE;

EID: 0038675584     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/952548.952551     Document Type: Conference Paper

References (16)

1. D. H. Ballard. Computer Vision. Prentice-Hall, Englewood Cliffs, 10. edition, 1982.
2. A. Blake and A. Zisserman. Visual Reconstruction. MIT Press, Cambridge, Mass., 1987.
3. D. Bozinov and J. Rahnenführer. Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering. Bioinformatics, 18(5), 2002.
4. C. S. Brown., P. Goodwin, and P. Sorger. Image metrics in the statistical analysis of DNA microarray data. PNAS, 98(16):8944-8949, 2001.
5. J. Buhler, T. Ideker, and D. Haynor. Dapple: Improved Techiques for Finding Spots on DNA Microarrays. Technical Report UWTR 2000-08-05, University of Washington, 2000.
6. Y. Chen, E. R. Dougherty, and M. L. Bittner. Ratio-Based Decisions and the Quantitative Analysis of cDNA Microarray Images. J. Biomedical Optics, 2(4):364-374, 1997.
7. P. B. Chou, P. R. Cooper, M. J. Swain, C. M. Brown, and L. E. Wixson. Probabilistic Network Inference for Cooperative High and Low Level Vision. In R. Chellappa, editor, Markov random fields, pages 211-243, 1993.
8. M. Eisen and P. Brown. DNA arrays for analysis of gene expression. Methods in Enzymology, 303, 1999.
9. Gai, X., Lal, S., Xing, L., Brendel, V., and V. Walbot. Gene discovery using the maize genome database ZmDB. Nucleic Acids Research, (28):94-96, 2000.
10. A. Jain, T. Tokuyasu, A. Snijders, R. Segraves, D. Albertson, and D. Pinkel. Fully Automatic Quantification of Microarray Image Data. Genome Res., 12(2):325-332, 2002.
11. M. Katzer, F. Kummert, and G. Sagerer. Automatische Auswertung von Mikroarraybildern. In Workshop Bildverarbeitung für die Medizin, Leipzig, 2002.
12. R. Kindermann and J. L. Snell. Markov random fields and their applications. Contemporary Mathematics 1. American Mathematical Society, Providence, RI, 1980.
13. S. Z. Li. Markov random field modeling in image analysis. Computer science workbench. Springer, Tokyo, 2. edition, 2001.
14. G. Sherlock, T. Hernandez-Boussard, and A. Kasarskis. The Stanford Microarray Database. Nucleic Acids Research, (29):152-155, 2001.
15. M. Steinfath, W. Wruck, and H. Seidel. Automated image analysis for array hybridization experiments. Bioinformatics, 2001, Vol. 17, T. 7, S. 634-641, 2001.
16. Y. H. Yang, M. J. Buckley, S. Dudoit, and T. P. Speed. Comparison of Methods for Image Analysis on cDNA Microarray Data. Journal of Computational and Graphical Statistics, 11:108-136, 2002.