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Volumn 4400 LNCS, Issue PART 2, 2007, Pages 225-243

Rough sets in bioinformatics

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL SYSTEMS; GENES; PROBLEM SOLVING; PROGRAM INTERPRETERS; PROTEINS; ROUGH SET THEORY;

EID: 38149000193     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-71663-1_14     Document Type: Conference Paper
Times cited : (11)

References (66)
  • 3
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary dna microarray
    • Schena, M., Shalon, D., Davis, R., Brown, P.O.: Quantitative monitoring of gene expression patterns with a complementary dna microarray. Science 270 (1995) 467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.3    Brown, P.O.4
  • 5
    • 0037370373 scopus 로고    scopus 로고
    • Proteomics: The first decade and beyond
    • Patterson, S.D., Aebersold, R.H.: Proteomics: the first decade and beyond. Nat Genet 33 Suppl (2003) 311-323
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 311-323
    • Patterson, S.D.1    Aebersold, R.H.2
  • 6
    • 0037370478 scopus 로고    scopus 로고
    • Bioinformatics in the post-sequence era
    • Kanehisa, M., Bork, P.: Bioinformatics in the post-sequence era. Nat Genet 33 Suppl (2003) 305-310
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 305-310
    • Kanehisa, M.1    Bork, P.2
  • 8
    • 0742321913 scopus 로고    scopus 로고
    • Mining the biomedical literature in the genomic era: An overview
    • Shatkay, H., Feldman, R.: Mining the biomedical literature in the genomic era: an overview. J Comput Biol 10 (2003) 821-855
    • (2003) J Comput Biol , vol.10 , pp. 821-855
    • Shatkay, H.1    Feldman, R.2
  • 9
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Jenssen, T.K., Lægreid, A., Komorowski, J., Hovig, E.: A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 28 (2001) 21-28
    • (2001) Nat Genet , vol.28 , pp. 21-28
    • Jenssen, T.K.1    Lægreid, A.2    Komorowski, J.3    Hovig, E.4
  • 11
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium: Gene ontology: tool for the unification of biology. Nature Genetics 25 (2000) 25-29
    • (2000) Nature Genetics , vol.25 , pp. 25-29
  • 13
    • 0010518383 scopus 로고
    • Rough Sets: Theoretical Aspects of Reasoning about Data
    • of, Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Pawlak, Z.: Rough Sets: Theoretical Aspects of Reasoning about Data. Volume 9 of Series D: System Theory, Knowledge Engineering and Problem Solving. Kluwer Academic Publishers, Dordrecht, The Netherlands (1991)
    • (1991) Series D: System Theory, Knowledge Engineering and Problem Solving , vol.9
    • Pawlak, Z.1
  • 15
    • 38149088113 scopus 로고    scopus 로고
    • Skowron, A., Rauszer, C.: The discernibility matrices and functions in information systems. In Slowiński, R., ed.: Intelligent Decision Support: Handbook of Applications and Advances in Rough Sets Theory. 11 of Series D: System Theory, Knowledge Engineering and Problem Solving. Kluwer Academic Publishers, Dordrecht, The Netherlands (1992) 331-362
    • Skowron, A., Rauszer, C.: The discernibility matrices and functions in information systems. In Slowiński, R., ed.: Intelligent Decision Support: Handbook of Applications and Advances in Rough Sets Theory. Volume 11 of Series D: System Theory, Knowledge Engineering and Problem Solving. Kluwer Academic Publishers, Dordrecht, The Netherlands (1992) 331-362
  • 16
    • 38149052181 scopus 로고    scopus 로고
    • Skowron, A., Nguyen, H.S.: Boolean reasoning scheme with some applications in data mining. In [66] 107-115
    • Skowron, A., Nguyen, H.S.: Boolean reasoning scheme with some applications in data mining. In [66] 107-115
  • 17
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill, G.A.: Fundamentals of experimental design for cDNA microarrays. Nat Genet 32 Suppl (2002) 490-495
    • (2002) Nat Genet , vol.32 , Issue.SUPPL. , pp. 490-495
    • Churchill, G.A.1
  • 18
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush, J.: Microarray data normalization and transformation. Nat Genet 32 Suppl (2002) 496-501
    • (2002) Nat Genet , vol.32 , Issue.SUPPL. , pp. 496-501
    • Quackenbush, J.1
  • 19
    • 0032903908 scopus 로고    scopus 로고
    • Iyer, V.R., Eisen, M.B., Ross, D.T., Schuler, G., Moore, T., Lee, J.CF., Trent, J.M., Staudt, L.M., Jr., J.D., Boguski, M.S., Lashkari, D., Shalon, D., Botstein, D., Brown, P.O.: The transcriptional program in the response of human fibroblasts to serum. Science 283 (1999) 83-87
    • Iyer, V.R., Eisen, M.B., Ross, D.T., Schuler, G., Moore, T., Lee, J.CF., Trent, J.M., Staudt, L.M., Jr., J.D., Boguski, M.S., Lashkari, D., Shalon, D., Botstein, D., Brown, P.O.: The transcriptional program in the response of human fibroblasts to serum. Science 283 (1999) 83-87
  • 25
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • Hanley, J.A., McNeil, B.J.: The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 143 (1982) 29-36
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 28
    • 0035229817 scopus 로고    scopus 로고
    • Predicting gene function from gene expressions and ontologies
    • Altman, R.B, Dunker, A.K, Hunter, L, Lauderdale, K, Klein, T.E, eds, Hawai'i, World Scientific Publishing Co
    • Hvidsten, T.R., Komorowski, J., Sandvik, A.K., Lægreid, A.: Predicting gene function from gene expressions and ontologies. In Altman, R.B., Dunker, A.K., Hunter, L., Lauderdale, K., Klein, T.E., eds.: Pacific Symposium on Biocomputing, Mauna Lani, Hawai'i, World Scientific Publishing Co. (2001) 299-310
    • (2001) Pacific Symposium on Biocomputing, Mauna Lani , pp. 299-310
    • Hvidsten, T.R.1    Komorowski, J.2    Sandvik, A.K.3    Lægreid, A.4
  • 29
    • 0038729567 scopus 로고    scopus 로고
    • Learning rule-based models of biological process from gene expression time profiles using gene ontology
    • Hvidsten, T.R., Lægreid, A., Komorowski, J.: Learning rule-based models of biological process from gene expression time profiles using gene ontology. Bioinformatics 19 (2003) 1116-1123
    • (2003) Bioinformatics , vol.19 , pp. 1116-1123
    • Hvidsten, T.R.1    Lægreid, A.2    Komorowski, J.3
  • 30
    • 0038781869 scopus 로고    scopus 로고
    • Predicting gene ontology biological process from temporal gene expression patterns
    • Lægreid, A., Hvidsten, T.R., Midelfart, H., Komorowski, J., Sandvik, A.K.: Predicting gene ontology biological process from temporal gene expression patterns. Genome Res 13 (2003) 965-979
    • (2003) Genome Res , vol.13 , pp. 965-979
    • Lægreid, A.1    Hvidsten, T.R.2    Midelfart, H.3    Komorowski, J.4    Sandvik, A.K.5
  • 31
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression pattern
    • Eisen, M., Spellman, P., Brown, P., Botstein, D.: Cluster analysis and display of genome-wide expression pattern. Proc. Natl. Acad. Sci. USA 95 (1998) 14863-14868
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14863-14868
    • Eisen, M.1    Spellman, P.2    Brown, P.3    Botstein, D.4
  • 32
    • 84984932472 scopus 로고    scopus 로고
    • Exploring the new world of the genome with DNA microarrays
    • Brown, P.O., Botstein, D.: Exploring the new world of the genome with DNA microarrays. Nat Genet 21 (1999) 33-37
    • (1999) Nat Genet , vol.21 , pp. 33-37
    • Brown, P.O.1    Botstein, D.2
  • 34
    • 0034785443 scopus 로고    scopus 로고
    • Identifying regulatory networks by combinatorial analysis of promoter elements
    • Pilpel, Y., Sudarsanam, P., Church, G.M.: Identifying regulatory networks by combinatorial analysis of promoter elements. Nature genetics 29 (2001) 153-159
    • (2001) Nature genetics , vol.29 , pp. 153-159
    • Pilpel, Y.1    Sudarsanam, P.2    Church, G.M.3
  • 36
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    • Hughes, J.D., Estep, P.W., Tavazoie, S., Church, G.M.: Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J Mol Biol 296 (2000) 1205-1214
    • (2000) J Mol Biol , vol.296 , pp. 1205-1214
    • Hughes, J.D.1    Estep, P.W.2    Tavazoie, S.3    Church, G.M.4
  • 39
    • 38149021357 scopus 로고    scopus 로고
    • Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors
    • Submitted
    • Andersson, C.R., Hvidsten, T.R., Isaksson, A., Gustafsson, M.G., Komorowski, J.: Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors. Submitted (2006)
    • (2006)
    • Andersson, C.R.1    Hvidsten, T.R.2    Isaksson, A.3    Gustafsson, M.G.4    Komorowski, J.5
  • 40
    • 0033964710 scopus 로고    scopus 로고
    • From genes to protein structure and function: Novel applications of computational approaches in the genomic era
    • Skolnick, J., Fetrow, J.S.: From genes to protein structure and function: Novel applications of computational approaches in the genomic era. Trends Biotechnol 18 (2000) 34-39
    • (2000) Trends Biotechnol , vol.18 , pp. 34-39
    • Skolnick, J.1    Fetrow, J.S.2
  • 42
    • 31144467558 scopus 로고    scopus 로고
    • The impact of structural genomics: Expectations and outcomes
    • Chandonia, J.M., Brenner, S.E.: The impact of structural genomics: Expectations and outcomes. Science 311 (2006) 347-351
    • (2006) Science , vol.311 , pp. 347-351
    • Chandonia, J.M.1    Brenner, S.E.2
  • 43
    • 30344447955 scopus 로고    scopus 로고
    • Assessment of predictions submitted for the CASP6 comparative modeling category
    • Tress, M., Ezkurdia, I., Grańa, O., López, G., Valencia, A.: Assessment of predictions submitted for the CASP6 comparative modeling category. Proteins 61 Suppl 7 (2005) 27-45
    • (2005) Proteins , vol.61 , Issue.SUPPL. 7 , pp. 27-45
    • Tress, M.1    Ezkurdia, I.2    Grańa, O.3    López, G.4    Valencia, A.5
  • 44
    • 0037305974 scopus 로고    scopus 로고
    • Overview of structural genomics: From structure to function
    • Zhang, C., Kim, S.H.: Overview of structural genomics: from structure to function. Curr Opin Chem Biol 7 (2003) 28-32
    • (2003) Curr Opin Chem Biol , vol.7 , pp. 28-32
    • Zhang, C.1    Kim, S.H.2
  • 45
    • 24744437347 scopus 로고    scopus 로고
    • A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins
    • Hvidsten, T.R., Kryshtafovych, A., Komorowski, J., Fidelis, K.: A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins. Bioinformatics 19 Suppl 2 (2003) II81-II91
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 2
    • Hvidsten, T.R.1    Kryshtafovych, A.2    Komorowski, J.3    Fidelis, K.4
  • 46
    • 6944227836 scopus 로고    scopus 로고
    • Automated prediction of protein function and detection of functional sites from structure
    • Pazos, F., Sternberg, M.J.E.: Automated prediction of protein function and detection of functional sites from structure. Proc Natl Acad Sci USA 101 (2004) 14754-14759
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 14754-14759
    • Pazos, F.1    Sternberg, M.J.E.2
  • 48
    • 22544441094 scopus 로고    scopus 로고
    • ProFunc: A server for predicting protein function from 3D structure
    • Laskowski, R.A., Watson, J.D., Thornton, J.M.: ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res 33 (2005) W89-W93
    • (2005) Nucleic Acids Res , vol.33
    • Laskowski, R.A.1    Watson, J.D.2    Thornton, J.M.3
  • 49
    • 11844292002 scopus 로고    scopus 로고
    • Inference of protein function from protein structure
    • Pal, D., Eisenberg, D.: Inference of protein function from protein structure. Structure 13 (2005) 121-130
    • (2005) Structure , vol.13 , pp. 121-130
    • Pal, D.1    Eisenberg, D.2
  • 51
    • 33750052027 scopus 로고    scopus 로고
    • Drug design
    • Gasteiger, J, Engel, T, eds, Wiley-VCH, Weinheim
    • Terfloth, L.: Drug design. In Gasteiger, J., Engel, T., eds.: Chemoinformatics. Wiley-VCH, Weinheim (2003) 497-618
    • (2003) Chemoinformatics , pp. 497-618
    • Terfloth, L.1
  • 55
    • 38149075136 scopus 로고    scopus 로고
    • Computational proteomics analysis of HIV-1 protease interactome
    • Submitted
    • Kontijevskis, A., Wikberg, J.E.S., Komorowski, J.: Computational proteomics analysis of HIV-1 protease interactome. Submitted (2006)
    • (2006)
    • Kontijevskis, A.1    Wikberg, J.E.S.2    Komorowski, J.3
  • 56
    • 38149041635 scopus 로고    scopus 로고
    • Construction of rough set-based classifiers for predicting HIV resistance to non-nucleoside reverse transcriptase inhibitors
    • Manuscript
    • Kierczak, M., Rudnicki, W.R., Komorowski, J.: Construction of rough set-based classifiers for predicting HIV resistance to non-nucleoside reverse transcriptase inhibitors. Manuscript (2006)
    • (2006)
    • Kierczak, M.1    Rudnicki, W.R.2    Komorowski, J.3
  • 57
    • 0042656300 scopus 로고
    • Dynamic reducts as a tool for extracting laws from decision tables
    • Proc. International Symposium on Methodologies for Intelligent Systems. of, Springer-Verlag
    • Bazan, J.G., Skowron, A., Synak, P.: Dynamic reducts as a tool for extracting laws from decision tables. In: Proc. International Symposium on Methodologies for Intelligent Systems. Volume 869 of Lecture Notes in Artificial Intelligence., Springer-Verlag (1994) 346-355
    • (1994) Lecture Notes in Artificial Intelligence , vol.869 , pp. 346-355
    • Bazan, J.G.1    Skowron, A.2    Synak, P.3
  • 59
    • 38149084049 scopus 로고    scopus 로고
    • Ågotnes, T., Komorowski, J., Løken, T.: Taming large rule models in rough set approaches. In [66] 193-203
    • Ågotnes, T., Komorowski, J., Løken, T.: Taming large rule models in rough set approaches. In [66] 193-203
  • 60
    • 33845267693 scopus 로고    scopus 로고
    • Master thesis. The Linnaeus Centre for Bioinformatics, Uppsala University
    • Makosa, E.: Rule tuning. Master thesis. The Linnaeus Centre for Bioinformatics, Uppsala University (2005)
    • (2005) Rule tuning
    • Makosa, E.1
  • 61
    • 0031146361 scopus 로고    scopus 로고
    • Statistical evaluation of rough set dependency analysis
    • Düntsch, I.: Statistical evaluation of rough set dependency analysis. Int. J. HumanComputer Studies 46 (1997) 589-604
    • (1997) Int. J. HumanComputer Studies , vol.46 , pp. 589-604
    • Düntsch, I.1
  • 62
    • 0032205549 scopus 로고    scopus 로고
    • Uncertainty measures of rough set prediction
    • Düntsch, I., Gediga, G.: Uncertainty measures of rough set prediction. Artificial Intelligence 106 (1998) 109-137
    • (1998) Artificial Intelligence , vol.106 , pp. 109-137
    • Düntsch, I.1    Gediga, G.2
  • 63
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L.: Random forests. Machine Learning 45 (2001) 5-32
    • (2001) Machine Learning , vol.45 , pp. 5-32
    • Breiman, L.1
  • 64
    • 0000591990 scopus 로고
    • Synthesis of adaptive decision systems from experimental data
    • Aamodt, A, Komorowski, J, eds, Trondheim, Norway, IOS Press
    • Skowron, A.: Synthesis of adaptive decision systems from experimental data. In Aamodt, A., Komorowski, J., eds.: Fifth Scandinavian Conference on Artificial Intelligence, Trondheim, Norway, IOS Press (1995) 220-238
    • (1995) Fifth Scandinavian Conference on Artificial Intelligence , pp. 220-238
    • Skowron, A.1
  • 66
    • 38149032817 scopus 로고    scopus 로고
    • Proceedings of the Third European Symposium on Principles and Practice of Knowledge Discovery in Databases (PKDD'99)
    • Żytkow, J.M, Rauch, J, eds, of, Prague, Czech Republic
    • Żytkow, J.M., Rauch, J., eds.: Proceedings of the Third European Symposium on Principles and Practice of Knowledge Discovery in Databases (PKDD'99). Volume 1704 of Lecture Notes in Artificial Intelligence. Springer-Verlag, Prague, Czech Republic (1999)
    • (1999) Lecture Notes in Artificial Intelligence. Springer-Verlag , vol.1704


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