Micromonospora narathiwatensis sp. nov., from Thai peat swamp forest soils

Journal of General and Applied Microbiology

Volumn 53, Issue 5, 2007, Pages 287-293

  Thawai, Chitti ^a   Tanasupawat, Somboon ^a   Suwanborirux, Khanit ^a   Itoh, Takashi ^b   Kudo, Takuji ^b  

^a CHULALONGKORN UNIVERSITY   (Thailand)

^b RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

Actinomycetes; Micromonospora narathiwatensis; Peat swamp forest; Soil

Indexed keywords

BACTERIAL RNA; RIBOSOME RNA; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; FOREST SOIL; GENE SEQUENCE; LIPID COMPOSITION; MICROMONOSPORA; MICROMONOSPORA NARATHIWATENSIS; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PEATLAND; PHYLOGENETIC TREE; SEQUENCE ANALYSIS; SOIL MICROFLORA; SWAMP; THAILAND;

MICROMONOSPORA; PHYLOGENY; SOIL; SOIL MICROBIOLOGY; THAILAND; TREES; WETLANDS;

ACTINOBACTERIA (CLASS); MICROMONOSPORA;

EID: 38049178765     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.53.287     Document Type: Article

References (36)

1. Ara, I. and Kudo, T. (2007) Two new species of the genus Micromonospora: Micromonospora chokoriensis sp. nov. and Micromonospora coxensis sp. nov., isolated from sandy soil. J. Gen. Appl. Microbiol., 53, 29-37.
2. Arai, T. (1975) Culture Media for Actinomycetes. Tokyo: The Society for Actinomycetes, Japan.
3. Collins, M. D., Pirouz, T., Goodfellow, M., and Minnikin, D. E. (1977) Distribution of menaquinones in actinomycetes and corynebacteria. J. Gen. Microbiol., 100, 221-230.
4. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229.
5. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E., and Pang, C. H. N. (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int. J. Syst. Bacteriol., 24, 54-63.
7. Hirsch, P., Mevs, U., Kroppenstedt, R. M., Schumann, P., and Stackebrandt, E. (2004) Cryptoendolithic actinomycetes from antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932. Syst. Appl. Microbiol., 27, 166-174.
8. Itoh, T., Kudo, T., Parenti, F., and Seino, A. (1989) Amended description of the genus Kineosporia, based on chemotaxonomic and morphological studies. Int. J. Syst. Bacteriol., 39, 168-173.
9. Kämpfer, P. and Kroppenstedt, R. M. (1996) Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can. J. Microbiol., 42, 989-1005.
10. Kasai, H., Tamura, T., and Harayama, S. (2000) Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. Int. J. Syst. Bacteriol., 50, 127-134.
11. Kawamoto, I. (1989) Genus Micromonospora. In Bergeys Manual of Systematic Bacteriology, Vol. 4, ed. by Williams, S. T., Sharpe, M. E., and Holt, J. G., Williams & Wilkins, Baltimore, pp. 2442-2450.
12. Kawamoto, I., Oka, T., and Nara, T. (1981) Cell wall composition of Micromonospora olivasterospora, Micromonospora sagamiensis, and related organisms. J. Bacteriol., 146, 527-534.
13. Kluge, A. G. and Farris, F. S. (1969) Quantitative phyletics and the evolution of anurans. Syst. Zool., 18, 1-32.
14. Kroppenstedt, R. M. (1985) Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, ed. by Goodfellow, M. and Minnikin, D. E., Academic Press, London, pp. 173-199.
15. Kroppenstedt, R. M., Mayilraj, S., Wink, J. M., Kallow, W., Schumann, P., Secondini, C., and Stackebrandt, E. (2005) Eight new species of the genus Micromonospora, Micromonospora citrea sp. nov., Micromonospora echinaurantiaca sp. nov., Micromonospora echinofusca sp. nov. Micromonospora fulviviridis sp. nov., Micromonospora inyonensis sp. nov., Micromonospora peucetia sp. nov., Micromonospora sagamiensis sp. nov., and Micromonospora viridifaciens sp. nov. Syst. Appl. Microbiol., 28, 328-339.
16. Lechevalier, M. P., DeBievre, C., and Lechevalier, H. A. (1977) Chemotaxonomy of aerobic actinomycetes: Phospholipid composition. Biochem. Syst. Ecol., 5, 249-260.
17. Lechevalier, M. P. and Lechevalier, H. A. (1970) Chemical composition as a criterion in the classification of aerobic actinomycetes. Int. J. Syst. Bacteriol., 20, 435-443.
18. Mikami, H. and Ishida, Y. (1983) Post-column fluorometric detection of reducing sugar in high-performance liquid chromatography using arginine. Bunseki Kagaku, 32, E207-E210.
19. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J. H. (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods, 2, 233-241.
20. Nakajima, Y., Kitpreechavanich, V., Suzuki, K., and Kudo, T. (1999) Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil. Int. J. Syst. Bacteriol., 49, 1761-1767.
21. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
22. Sasser, M. (1990) Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids (MIDI Technical Note 101). Newark, DE.
23. Schleifer, K. H. and Kandler, O. (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol. Rev., 36, 407-477.
24. Shirling, E. B. and Gottlieb, D. (1966) Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol., 16, 313-340.
25. Stackebrandt, E., Rainey, F. A., and Ward-Rainey, N. L. (1997) Proposal for a new hierarchic classification system, Actinobacteria classis. nov. Int. J. Syst. Bacteriol., 47, 479-491.
26. Staneck, J. L. and Roberts, G. D. (1974) Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl. Microbiol., 28, 266-231.
27. Tamaoka, J. (1994) Determination of DNA base composition. In Chemical Methods in Prokaryotic Systematics, ed. by Goodfellow, M. and O'Donnell, A. G., John Wiley and Sons, Chichester, pp. 463-470.
28. Tamaoka, J. and Komagata, K. (1984) Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol. Lett., 25, 25-128.
29. Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., and Kudo, T. (2004) Micromonospora aurantionigra sp. nov., isolated from a peat swamp forest in Thailand. Actinomycetologica, 18, 8-14.
30. Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., and Kudo, T. (2005a) Micromonospora siamensis sp. nov., isolated from Thai peat swamp forest. J. Gen. Appl. Microbiol., 51, 229-234.
31. Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K., Suzuki, K., and Kudo, T. (2005b) Micromonospora eburnea sp. nov., isolated from a Thai peat swamp forest. Int. J. Syst. Evol. Microbiol., 55, 417-422.
32. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
33. Trujillo, M. E., Fernández-Molinero, C., Velázquez, E., Kroppenstez, R. M., Schumann, P., Mateos, P. F., and Martinez-Molina, E. (2005) Micromonospora mirobrigensis sp. nov. Int. J. Syst. Evol. Microbiol., 55, 877-880.
34. Trujillo, M. E., Kroppenstedt, R. M., Schumann, P., Carro, L., and Martinez-Molina, F. (2006) Micromonospora coriariae sp. nov., isolated from root nodules of Coriaria myrtifolia. Int. J. Syst. Evol. Microbiol., 56, 2381-2385.
35. Uchida, K. and Aida, K. (1984) An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J. Gen. Appl. Microbiol., 30, 131-134.
36. Williams, S. T. and Cross, T. (1971) Actinomycetes. In Methods in Microbiology, Vol. 4, ed. by Booth, C., Academic Press, London, pp. 295-334.