메뉴 건너뛰기




Volumn 67, Issue 1-2, 2008, Pages 1-10

Expressed sequence tag analysis and development of gene associated markers in a near-isogenic plant system of Eragrostis curvula

Author keywords

cDNA libraries; Eragrostis curvula; ESTs; Gene index; Genic markers

Indexed keywords

ARTICLE; DNA SEQUENCE; ERAGROSTIS; EXPRESSED SEQUENCE TAG; FLOWER; GENE LIBRARY; GENETIC MARKER; GENETICS; PLANT LEAF; PLOIDY; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 38049072541     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-007-9282-4     Document Type: Article
Times cited : (33)

References (48)
  • 3
    • 0344838601 scopus 로고    scopus 로고
    • Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP
    • Barker G, Batley J, O'Sullivan H, Edwards KJ, Edwards D (2003) Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP. Bioinformatics 19:421-422
    • (2003) Bioinformatics , vol.19 , pp. 421-422
    • Barker, G.1    Batley, J.2    O'Sullivan, H.3    Edwards, K.J.4    Edwards, D.5
  • 7
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Perol J, Talón M, Robles M (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatic 2:3674-3676
    • (2005) Bioinformatic , vol.2 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Perol, J.4    Talón, M.5    Robles, M.6
  • 8
    • 0001772636 scopus 로고
    • Introducción del pasto llorón en la Argentina
    • Fernandez O, Brevedad R, Gargajo (eds) CERZOS, Bahía Blanca, Argentina
    • Covas G, Cairnie A (1991) Introducción del pasto llorón en la Argentina. In: Fernandez O, Brevedad R, Gargajo (eds) El Pasto llorón su biología y manejo. CERZOS, Bahía Blanca, Argentina, pp 1-6
    • (1991) El Pasto Llorón Su Biología Y Manejo , pp. 1-6
    • Covas, G.1    Cairnie, A.2
  • 9
    • 0030457899 scopus 로고    scopus 로고
    • Plant regeneration in weeping lovegrass, (Eragrostis curvula) through inflorescence culture
    • Echenique CV, Polci P, Mroginski L (1996) Plant regeneration in weeping lovegrass, (Eragrostis curvula) through inflorescence culture. Plant Cell Tissue Organ Cult 46:123-130
    • (1996) Plant Cell Tissue Organ Cult , vol.46 , pp. 123-130
    • Echenique, C.V.1    Polci, P.2    Mroginski, L.3
  • 10
    • 0346949030 scopus 로고    scopus 로고
    • Isolation of EST-derived microsatellite markers for genotyping the a and B genomes of wheat
    • Eujayl I, Sorrells ME, Baum M, Wolters P, Powell W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor Appl Genet 104:399-407
    • (2002) Theor Appl Genet , vol.104 , pp. 399-407
    • Eujayl, I.1    Sorrells, M.E.2    Baum, M.3    Wolters, P.4    Powell, W.5
  • 11
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy Assessment
    • Ewing B, Hillier LD, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy Assessment. Genome Res 8:175-185
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.D.2    Wendl, M.C.3    Green, P.4
  • 13
    • 0032721621 scopus 로고    scopus 로고
    • Identification of candidate coding region single nucleotide polymorphisms in 165 human genes using assembled expressed sequence tags
    • Garg K, Green P, Nickerson DA (1999) Identification of candidate coding region single nucleotide polymorphisms in 165 human genes using assembled expressed sequence tags. Genome Res 9:1087-1092
    • (1999) Genome Res , vol.9 , pp. 1087-1092
    • Garg, K.1    Green, P.2    Nickerson, D.A.3
  • 15
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9:868-877
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 16
    • 0037551902 scopus 로고    scopus 로고
    • The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: Evidence from unclear waxy and plastid rps 16
    • Ingram AL, Doyle JJ (2003) The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from unclear waxy and plastid rps 16. Am J Bot 90:116-122
    • (2003) Am J Bot , vol.90 , pp. 116-122
    • Ingram, A.L.1    Doyle, J.J.2
  • 18
    • 0036010770 scopus 로고    scopus 로고
    • Data mining for simple sequences repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat
    • Kantety RV, La Rota M, Matthews DE, Sorrells ME (2002) Data mining for simple sequences repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48:501-510
    • (2002) Plant Mol Biol , vol.48 , pp. 501-510
    • Kantety, R.V.1    La Rota, M.2    Matthews, D.E.3    Sorrells, M.E.4
  • 19
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genome sequences
    • Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18:1161-1167
    • (2001) Mol Biol Evol , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Gupta, V.S.3
  • 20
    • 25444467752 scopus 로고    scopus 로고
    • Nonrandom distribution and frequencies of genomic and ESTderived microsatellite markers in rice, wheat, and barley
    • La Rota M, Kantety RV, Yu J-K, Sorrells ME (2005) Nonrandom distribution and frequencies of genomic and ESTderived microsatellite markers in rice, wheat, and barley. BMC Genomics 6:23
    • (2005) BMC Genomics , vol.6 , pp. 23
    • La Rota, M.1    Kantety, R.V.2    Yu, J.-K.3    Sorrells, M.E.4
  • 21
    • 0027285192 scopus 로고
    • The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates
    • Lagercrantz U, Ellegren H, Anderson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115
    • (1993) Nucleic Acids Res , vol.21 , pp. 1111-1115
    • Lagercrantz, U.1    Ellegren, H.2    Anderson, L.3
  • 23
    • 0004038637 scopus 로고
    • Oxford University Press New York
    • Lewin B (1994) Genes V. Oxford University Press, New York
    • (1994) Genes V
    • Lewin, B.1
  • 24
    • 0036671301 scopus 로고    scopus 로고
    • Functional mapping of quantitative trait loci underlying the character process: A theoretical framework
    • Ma C-X, Casella G, Wu R (2002) Functional mapping of quantitative trait loci underlying the character process: a theoretical framework. Genetics 16:1751-1762
    • (2002) Genetics , vol.16 , pp. 1751-1762
    • Ma, C.-X.1    Casella, G.2    Wu, R.3
  • 26
    • 0027357965 scopus 로고
    • PCR-amplified microsatellites as markers in plant genetics
    • Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
    • (1993) Plant J , vol.3 , pp. 175-182
    • Morgante, M.1    Olivieri, A.M.2
  • 27
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassay with tobacco tissue cultures
    • Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiol Plant 15:473-497
    • (1962) Physiol Plant , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 29
    • 15844400066 scopus 로고    scopus 로고
    • Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers
    • Peng JH, Lapitan NLV (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics 5:80-96
    • (2005) Funct Integr Genomics , vol.5 , pp. 80-96
    • Peng, J.H.1    Lapitan, N.L.V.2
  • 30
    • 42149083246 scopus 로고
    • Citogenética
    • Fernandez O, Brevedad R, Gargajo (eds) CERZOS, Bahía Blanca, Argentina
    • Poverene MM, Curvetto NR (1991) Citogenética. In: Fernandez O, Brevedad R, Gargajo (eds) El Pasto llorón su biología y manejo. CERZOS, Bahía Blanca, Argentina, pp 19-38
    • (1991) El Pasto Llorón Su Biología Y Manejo , pp. 19-38
    • Poverene, M.M.1    Curvetto, N.R.2
  • 31
    • 42149099922 scopus 로고
    • Estudios citogenéticos en pasto llorón, Eragrostis curvula (Schrad.) Nees s. lat. II. Comportamiento meiótico
    • Poverene MM, Gardey C, Curvetto NR (1986) Estudios citogenéticos en pasto llorón, Eragrostis curvula (Schrad.) Nees s. lat. II. Comportamiento meiótico. Rev Univ Nac Río cuarto 6:67-78
    • (1986) Rev Univ Nac Río Cuarto , vol.6 , pp. 67-78
    • Poverene, M.M.1    Gardey, C.2    Curvetto, N.R.3
  • 32
    • 0030183057 scopus 로고    scopus 로고
    • Polymorphism revealed by simple sequence repeats
    • Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends Plant Sci 1:215-222
    • (1996) Trends Plant Sci , vol.1 , pp. 215-222
    • Powell, W.1    MacHray, G.C.2    Provan, J.3
  • 33
    • 32544443923 scopus 로고    scopus 로고
    • Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study
    • Ravel C, Praud S, Linossier AML, Balfourier MDF, Brunel PDD, Charmet G (2005) Identification of Glu-B1-1 as a candidate gene for the quantity of high-molecular-weight glutenin in bread wheat (Triticum aestivum L.) by means of an association study. Theor Appl Genet 112:738-743
    • (2005) Theor Appl Genet , vol.112 , pp. 738-743
    • Ravel, C.1    Praud, S.2    Linossier, A.M.L.3    Balfourier, M.D.F.4    Brunel, P.D.D.5    Charmet, G.6
  • 38
    • 0024387394 scopus 로고
    • Hypervariability of simple sequences as a general source for polymorphic DNA markers
    • Tautz D (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucl Acids Res 17:6463-6471
    • (1989) Nucl Acids Res , vol.17 , pp. 6463-6471
    • Tautz, D.1
  • 39
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422
    • (2003) Theor Appl Genet , vol.106 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 40
    • 0033858199 scopus 로고    scopus 로고
    • Microastellites in different eukaryotic genomes: Survey and analysis
    • Tóth G, Gáspári Z, Jurka J (2000) Microastellites in different eukaryotic genomes: survey and analysis. Genome Res 10:967-981
    • (2000) Genome Res , vol.10 , pp. 967-981
    • Tóth, G.1    Gáspári, Z.2    Jurka, J.3
  • 41
    • 0035984046 scopus 로고    scopus 로고
    • Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing
    • Van der Hoevent R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. Plant Cell 14:1441-1456
    • (2002) Plant Cell , vol.14 , pp. 1441-1456
    • Van Der Hoeven, R.1    Ronning, C.2    Giovannoni, J.3    Martin, G.4    Tanksley, S.5
  • 42
    • 85101433720 scopus 로고    scopus 로고
    • Lovegrasses
    • American Society of Agronomy, Crop Science Society of America, Soil Science Society of America, Chapter 32
    • Voigt P, Rethman N, Poverene M (2004) Lovegrasses. In: American Society of Agronomy, Crop Science Society of America, Soil Science Society of America, Warm-Season (C4) Grasses, Agronomy Monograph No.45. Chapter 32:1027-1056
    • (2004) Warm-Season (C4) Grasses, Agronomy Monograph , vol.45 , pp. 1027-1056
    • Voigt, P.1    Rethman, N.2    Poverene, M.3
  • 46
    • 2442555213 scopus 로고    scopus 로고
    • Chromosomal location of genes for novel glutenin subunits and gliadins in wild emmer wheat Triticum turgidum L. var. dicoccoides)
    • Xu SS, Khan K, Klindworth DL, Faris JD, Nygar G (2004) Chromosomal location of genes for novel glutenin subunits and gliadins in wild emmer wheat Triticum turgidum L. var. dicoccoides). Theor Appl Genet 108:1221-1228
    • (2004) Theor Appl Genet , vol.108 , pp. 1221-1228
    • Xu, S.S.1    Khan, K.2    Klindworth, D.L.3    Faris, J.D.4    Nygar, G.5
  • 47
    • 0347125572 scopus 로고
    • Taxonomic patterns in protein amino acid profiles of grass leaves and caryopses
    • Smithsonian Insitution Press Washington, DC
    • Yeho H-H, Watson L (1986) Taxonomic patterns in protein amino acid profiles of grass leaves and caryopses. In: Soderstrom TR, Hilu KW, Campbell CS, Barkworth ME (eds) Grass system and evolution. Smithsonian Insitution Press, Washington, DC, pp 88-96
    • (1986) Grass System and Evolution , pp. 88-96
    • Yeho, H.-H.1    Watson, L.2    Soderstrom, T.R.3    Hilu, K.W.4    Campbell, C.S.5    Barkworth, M.E.6
  • 48
    • 33745852210 scopus 로고    scopus 로고
    • Expressed sequence tag analysis in tef [Eragrostis tef (Zucc.) Trotter]
    • Yu J-K, Sun Q, La Rota M, Edwards H, Tefera H, Sorrells ME (2006) Expressed sequence tag analysis in tef [Eragrostis tef (Zucc.) Trotter]. Genome 49:365-372
    • (2006) Genome , vol.49 , pp. 365-372
    • Yu, J.-K.1    Sun, Q.2    La Rota, M.3    Edwards, H.4    Tefera, H.5    Sorrells, M.E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.