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Volumn 250, Issue 3, 2008, Pages 560-568

Simple quasispecies models for the survival-of-the-flattest effect: The role of space

Author keywords

Absorbing first order phase transitions; Critical phenomena; Quasispecies spatial dynamics; Robustness; Survival of the flattest; Virus evolution

Indexed keywords

CELLULAR AUTOMATON; GENOTYPE; HYPOTHESIS TESTING; MUTATION; NATURAL SELECTION; SURVIVAL; TWO-DIMENSIONAL MODELING; VIROID; VIRUS;

EID: 38049060642     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2007.10.027     Document Type: Article
Times cited : (35)

References (29)
  • 1
    • 0035907402 scopus 로고    scopus 로고
    • Error threshold for spatially resolved evolution in the quasispecies model
    • Altemeyer S., and McCaskill J.S. Error threshold for spatially resolved evolution in the quasispecies model. Phys. Rev. Lett. 86 25 (2001) 5819-5822
    • (2001) Phys. Rev. Lett. , vol.86 , Issue.25 , pp. 5819-5822
    • Altemeyer, S.1    McCaskill, J.S.2
  • 2
    • 33947139566 scopus 로고    scopus 로고
    • Selection promotes organ compartmentalization in HIV-1: evidence from gag and pol genes
    • Bordería A.V., Codoñer F.M., and Sanjuán R. Selection promotes organ compartmentalization in HIV-1: evidence from gag and pol genes. Evolution 61 (2007) 272-279
    • (2007) Evolution , vol.61 , pp. 272-279
    • Bordería, A.V.1    Codoñer, F.M.2    Sanjuán, R.3
  • 3
    • 33846018059 scopus 로고    scopus 로고
    • Codoñer, F.M., Daròs, J.A., Solé, R.V., Elena, S.F., 2006. The fittest versus the flattest: experimental confirmation of the quasispecies effect with subviral pathogens. PLOS Pathog. 2(12):e136. doi: 10.1371/journal.ppat.0020136.
  • 4
    • 0141730419 scopus 로고    scopus 로고
    • Fluorescent labeling reveals spatial separation of potyvirus populations in mixed infected "Nicotiana benthamiana" plants
    • Dietrich C., and Maiss E. Fluorescent labeling reveals spatial separation of potyvirus populations in mixed infected "Nicotiana benthamiana" plants. J. Gen. Virol. 84 (2003) 2871-2876
    • (2003) J. Gen. Virol. , vol.84 , pp. 2871-2876
    • Dietrich, C.1    Maiss, E.2
  • 5
    • 0036132387 scopus 로고    scopus 로고
    • Quasispecies theory in virology
    • Domingo E. Quasispecies theory in virology. J. Virol. 76 (2002) 463-465
    • (2002) J. Virol. , vol.76 , pp. 463-465
    • Domingo, E.1
  • 6
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo E., and Holland J.J. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51 (1997) 151-178
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 9
    • 0026542755 scopus 로고
    • In vitro selection of variants of Human immunodeficiency virus type 1 resistant to 3'-azido-3'deoxythymidine and 2',3'-dideoxyinosine
    • Gao Q., Gu Z.X., Parniak M.A., Li X.G., and Wainberg M.A. In vitro selection of variants of Human immunodeficiency virus type 1 resistant to 3'-azido-3'deoxythymidine and 2',3'-dideoxyinosine. J. Virol. 66 1 (1992) 12-19
    • (1992) J. Virol. , vol.66 , Issue.1 , pp. 12-19
    • Gao, Q.1    Gu, Z.X.2    Parniak, M.A.3    Li, X.G.4    Wainberg, M.A.5
  • 10
    • 0035836375 scopus 로고    scopus 로고
    • Three distinct mechanisms facilitate genetic isolation of sympatric Wheat streak mosaic virus lineages
    • Hall J.S., French R., Hein G.L., Morris J., and Stenger D.C. Three distinct mechanisms facilitate genetic isolation of sympatric Wheat streak mosaic virus lineages. Virology 282 (2001) 230-236
    • (2001) Virology , vol.282 , pp. 230-236
    • Hall, J.S.1    French, R.2    Hein, G.L.3    Morris, J.4    Stenger, D.C.5
  • 11
    • 0036133286 scopus 로고    scopus 로고
    • Is the quasispecies concept relevant to RNA viruses?
    • Holmes E.C., and Moya A. Is the quasispecies concept relevant to RNA viruses?. J. Virol. 76 (2002) 460-465
    • (2002) J. Virol. , vol.76 , pp. 460-465
    • Holmes, E.C.1    Moya, A.2
  • 12
  • 13
    • 33144462048 scopus 로고    scopus 로고
    • Distinct viral populations differentiate and evolve independently in a single perennial host plant
    • Jridi C., Martin J.F., Mareie-Jeanne V., Labonne G., and Blanc S. Distinct viral populations differentiate and evolve independently in a single perennial host plant. J. Virol. 80 (2006) 2349-2357
    • (2006) J. Virol. , vol.80 , pp. 2349-2357
    • Jridi, C.1    Martin, J.F.2    Mareie-Jeanne, V.3    Labonne, G.4    Blanc, S.5
  • 14
    • 0037719282 scopus 로고    scopus 로고
    • Increased polymerase fidelity of lamivudine-resistant HIV-1 variants does not limit their evolutionary potential
    • Keulen W., van Wijk A., Schuurman R., Berkhout B., and Boucher C.A. Increased polymerase fidelity of lamivudine-resistant HIV-1 variants does not limit their evolutionary potential. AIDS 13 (1999) 1343-1349
    • (1999) AIDS , vol.13 , pp. 1343-1349
    • Keulen, W.1    van Wijk, A.2    Schuurman, R.3    Berkhout, B.4    Boucher, C.A.5
  • 15
    • 0024310253 scopus 로고
    • Multiple mutations in HIV-1 reverse transcriptase confer high-level resistance to zidovudine (AZT)
    • Larder B.A., and Kemp S.D. Multiple mutations in HIV-1 reverse transcriptase confer high-level resistance to zidovudine (AZT). Science 246 (1989) 1155-1158
    • (1989) Science , vol.246 , pp. 1155-1158
    • Larder, B.A.1    Kemp, S.D.2
  • 16
    • 4544331687 scopus 로고    scopus 로고
    • Genetic bottlenecks reduce population variation in an experimental RNA virus population
    • Li H., and Roossinck M.J. Genetic bottlenecks reduce population variation in an experimental RNA virus population. J. Virol. 78 (2004) 10582-10587
    • (2004) J. Virol. , vol.78 , pp. 10582-10587
    • Li, H.1    Roossinck, M.J.2
  • 17
    • 0038809107 scopus 로고    scopus 로고
    • A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity
    • Pfeiffer J.K., and Kirkegaard K.P. A single mutation in poliovirus RNA-dependent RNA polymerase confers resistance to mutagenic nucleotide analogs via increased fidelity. Proc. Natl Acad. Sci. USA 100 (2003) 7289-7294
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 7289-7294
    • Pfeiffer, J.K.1    Kirkegaard, K.P.2
  • 18
    • 0141458956 scopus 로고    scopus 로고
    • Estimation of population bottlenecks during systemic movement of Tobacco mosaic virus in tobacco plants
    • Sacristán S., Malpica J.M., Fraile A., and García-Arenal F. Estimation of population bottlenecks during systemic movement of Tobacco mosaic virus in tobacco plants. J. Virol. 77 (2003) 9906-9911
    • (2003) J. Virol. , vol.77 , pp. 9906-9911
    • Sacristán, S.1    Malpica, J.M.2    Fraile, A.3    García-Arenal, F.4
  • 19
    • 17544386547 scopus 로고    scopus 로고
    • Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region
    • Sanjuán R., Codoñer F.M., Moya A., and Elena S.F. Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region. Evolution 58 (2004) 1185-1194
    • (2004) Evolution , vol.58 , pp. 1185-1194
    • Sanjuán, R.1    Codoñer, F.M.2    Moya, A.3    Elena, S.F.4
  • 21
    • 0023811909 scopus 로고
    • Stationary mutant distributions and evolutionary optimization
    • Schuster P., and Swetina J. Stationary mutant distributions and evolutionary optimization. Bull. Math. Biol. 50 (1988) 635-660
    • (1988) Bull. Math. Biol. , vol.50 , pp. 635-660
    • Schuster, P.1    Swetina, J.2
  • 23
    • 38049089252 scopus 로고    scopus 로고
    • Red Queen dynamics, competition and critical points in a model of RNA virus quasispecies
    • Solé R.V., Ferrer R., González-García I., Quer J., and Domingo E. Red Queen dynamics, competition and critical points in a model of RNA virus quasispecies. J. Theor. Biol. 240 3 (1999) 353-359
    • (1999) J. Theor. Biol. , vol.240 , Issue.3 , pp. 353-359
    • Solé, R.V.1    Ferrer, R.2    González-García, I.3    Quer, J.4    Domingo, E.5
  • 24
    • 33646248893 scopus 로고    scopus 로고
    • Information catastrophe in RNA viruses through replication thresholds
    • Solé R.V., Sardanyés J., Díez J., and Mas A. Information catastrophe in RNA viruses through replication thresholds. J. Theor. Biol. 240 3 (2006) 353-359
    • (2006) J. Theor. Biol. , vol.240 , Issue.3 , pp. 353-359
    • Solé, R.V.1    Sardanyés, J.2    Díez, J.3    Mas, A.4
  • 25
    • 17444433010 scopus 로고    scopus 로고
    • Spatial supression of error catastrophe in a growing pattern
    • Toyabe S., and Sano M. Spatial supression of error catastrophe in a growing pattern. Physica D 203 (2005) 1-8
    • (2005) Physica D , vol.203 , pp. 1-8
    • Toyabe, S.1    Sano, M.2
  • 27
    • 0034895529 scopus 로고    scopus 로고
    • Adaptive evolution on neutral networks
    • Wilke C.O. Adaptive evolution on neutral networks. Bull. Math. Biol. 63 (2001) 715-730
    • (2001) Bull. Math. Biol. , vol.63 , pp. 715-730
    • Wilke, C.O.1
  • 28
    • 0035544542 scopus 로고    scopus 로고
    • Selection for fitness versus selection for robustness in RNA secondary structure folding
    • Wilke C.O. Selection for fitness versus selection for robustness in RNA secondary structure folding. Evolution 55 12 (2001) 2412-2420
    • (2001) Evolution , vol.55 , Issue.12 , pp. 2412-2420
    • Wilke, C.O.1
  • 29
    • 0035913336 scopus 로고    scopus 로고
    • Evolution of digital organisms at high mutation rates leads to survival of the flattest
    • Wilke C.O., Wang J.L., Ofria C., Lenski R.E., and Adami C. Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature 412 19 (2001) 331-333
    • (2001) Nature , vol.412 , Issue.19 , pp. 331-333
    • Wilke, C.O.1    Wang, J.L.2    Ofria, C.3    Lenski, R.E.4    Adami, C.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.