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Volumn 80, Issue 5, 2006, Pages 2349-2357

Distinct viral populations differentiate and evolve independently in a single perennial host plant

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED RNA POLYMERASE;

EID: 33144462048     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.80.5.2349-2357.2006     Document Type: Article
Times cited : (113)

References (47)
  • 2
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement, M., D. Posada, and K. A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9:1657-1659.
    • (2000) Mol. Ecol. , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 3
    • 0030032992 scopus 로고    scopus 로고
    • Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type 1 sequences
    • Crandall, K. A. 1996. Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type 1 sequences. Mol. Biol. Evol. 13:115-131.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 115-131
    • Crandall, K.A.1
  • 4
    • 0027285731 scopus 로고
    • Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
    • Crandall, K. A., and A. R. Templeton. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134:959-969.
    • (1993) Genetics , vol.134 , pp. 959-969
    • Crandall, K.A.1    Templeton, A.R.2
  • 5
    • 0141730419 scopus 로고    scopus 로고
    • Fluorescent labelling reveals spatial separation of polyvirus populations in mixed infected Nicotiana benthamiana plants
    • Dietrich, C., and E. Maiss. 2003. Fluorescent labelling reveals spatial separation of polyvirus populations in mixed infected Nicotiana benthamiana plants. J. Gen. Virol. 84:2871-2876.
    • (2003) J. Gen. Virol. , vol.84 , pp. 2871-2876
    • Dietrich, C.1    Maiss, E.2
  • 6
    • 0036132387 scopus 로고    scopus 로고
    • Quasispecies theory in virology
    • Domingo, E. 2002. Quasispecies theory in virology. J. Virol. 76:463-465.
    • (2002) J. Virol. , vol.76 , pp. 463-465
    • Domingo, E.1
  • 7
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo, E., and J. J. Holland. 1997. RNA virus mutations and fitness for survival. Annu. Rev. Microbiol. 51:151-178.
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 10
    • 0034109901 scopus 로고    scopus 로고
    • Contribution of uneven distribution of genomic RNA variants of Citrus tristeza virus (CTV) within the plant to changes in the viral population following aphid transmission
    • D'Urso, F., M. A. Ayllòn, L. Rubio, A. Sambade, A. Hermeso de Mendoza, J. Guerri, and P. Moreno. 2000. Contribution of uneven distribution of genomic RNA variants of Citrus tristeza virus (CTV) within the plant to changes in the viral population following aphid transmission. Plant Pathol. 49:288-294.
    • (2000) Plant Pathol. , vol.49 , pp. 288-294
    • D'Urso, F.1    Ayllòn, M.A.2    Rubio, L.3    Sambade, A.4    Hermeso De Mendoza, A.5    Guerri, J.6    Moreno, P.7
  • 11
    • 0037304854 scopus 로고    scopus 로고
    • Variation of haplotype distributions of two genomic regions of Citrus tristeza virus populations from eastern Spain
    • D'Urso, F., A. Sambade, A. Moya, J. Guerri, and P. Moreno. 2003. Variation of haplotype distributions of two genomic regions of Citrus tristeza virus populations from eastern Spain. Mol. Ecol. 12:517-526.
    • (2003) Mol. Ecol. , vol.12 , pp. 517-526
    • D'Urso, F.1    Sambade, A.2    Moya, A.3    Guerri, J.4    Moreno, P.5
  • 12
    • 0030162644 scopus 로고    scopus 로고
    • On the nature of virus quasispecies
    • Eigen, M. 1996. On the nature of virus quasispecies. Trends Microbiol. 4:216-218.
    • (1996) Trends Microbiol. , vol.4 , pp. 216-218
    • Eigen, M.1
  • 13
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 15
    • 0242406908 scopus 로고    scopus 로고
    • Evolution of Wheat streak mosaic virus: Dynamics of population growth within plants may explain limited variation
    • French, R., and D. C. Stenger. 2003. Evolution of Wheat streak mosaic virus: dynamics of population growth within plants may explain limited variation. Annu. Rev. Phytopathol. 41:199-214.
    • (2003) Annu. Rev. Phytopathol. , vol.41 , pp. 199-214
    • French, R.1    Stenger, D.C.2
  • 18
    • 0034798786 scopus 로고    scopus 로고
    • Variability and genetic structure of plant virus population
    • Garcia-Arenal, F., A. Fraile, and J. M. Malpica. 2001. Variability and genetic structure of plant virus population. Annu. Rev. Phytopathol. 39:157-186.
    • (2001) Annu. Rev. Phytopathol. , vol.39 , pp. 157-186
    • Garcia-Arenal, F.1    Fraile, A.2    Malpica, J.M.3
  • 19
    • 0036866366 scopus 로고    scopus 로고
    • A natural population of recombinant Plum pox virus is viable and competitive under field conditions
    • Glasa, M., V. Marie-Jeanne, G. Labonne, Z. Subr, O. Kudela, and J. B. Quiot. 2002. A natural population of recombinant Plum pox virus is viable and competitive under field conditions. Eur. J. Plant Pathol. 108:843-853.
    • (2002) Eur. J. Plant Pathol. , vol.108 , pp. 843-853
    • Glasa, M.1    Marie-Jeanne, V.2    Labonne, G.3    Subr, Z.4    Kudela, O.5    Quiot, J.B.6
  • 20
    • 0035836375 scopus 로고    scopus 로고
    • Three distinct mechanisms facilitate genetic isolation of sympatric wheat streak mosaic virus lineages
    • Hall, J. S., R. French, G. L. Hein, T. J. Morris, and D. C. Stenger. 2001. Three distinct mechanisms facilitate genetic isolation of sympatric wheat streak mosaic virus lineages. Virology 282:230-236.
    • (2001) Virology , vol.282 , pp. 230-236
    • Hall, J.S.1    French, R.2    Hein, G.L.3    Morris, T.J.4    Stenger, D.C.5
  • 21
    • 0345059165 scopus 로고    scopus 로고
    • Error thresholds and the constraints to RNA virus evolution
    • Holmes, E. C. 2003. Error thresholds and the constraints to RNA virus evolution. Trends Microbiol. 11:543-546.
    • (2003) Trends Microbiol. , vol.11 , pp. 543-546
    • Holmes, E.C.1
  • 22
    • 0036133286 scopus 로고    scopus 로고
    • Is the quasispecies concept relevant to RNA viruses?
    • Holmes, E. C., and A. Moya. 2002. Is the quasispecies concept relevant to RNA viruses? J. Virol. 76:460-462.
    • (2002) J. Virol. , vol.76 , pp. 460-462
    • Holmes, E.C.1    Moya, A.2
  • 23
    • 0024711523 scopus 로고
    • How often are polymorphic restriction sites due to a single mutation?
    • Hudson, R. R. 1989. How often are polymorphic restriction sites due to a single mutation? Theor. Popul. Biol. 36:23-33.
    • (1989) Theor. Popul. Biol. , vol.36 , pp. 23-33
    • Hudson, R.R.1
  • 25
    • 0033986062 scopus 로고    scopus 로고
    • Uneven distribution of hepatitis C virus quasispecies in tissues from subjects with end-stage liver disease: Confounding effect of viral adsorption and mounting evidence for the presence of low-level extrahepatic replication
    • Laskus, T., M. Radkowski, L. F. Wang, M. Nowicki, and J. Rakela. 2000. Uneven distribution of hepatitis C virus quasispecies in tissues from subjects with end-stage liver disease: confounding effect of viral adsorption and mounting evidence for the presence of low-level extrahepatic replication. J. Virol. 74:1014-1017.
    • (2000) J. Virol. , vol.74 , pp. 1014-1017
    • Laskus, T.1    Radkowski, M.2    Wang, L.F.3    Nowicki, M.4    Rakela, J.5
  • 26
    • 4544331687 scopus 로고    scopus 로고
    • Genetic bottlenecks reduce population variation in an experimental RNA virus population
    • Li, H., and M. J. Roossinck. 2004. Genetic bottlenecks reduce population variation in an experimental RNA virus population. J. Virol. 78:10582-10587.
    • (2004) J. Virol. , vol.78 , pp. 10582-10587
    • Li, H.1    Roossinck, M.J.2
  • 27
    • 0032952628 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism analysis of Apple stem grooving capillovirus sequence variants
    • Magome, H., N. Yoshikawa, and T. Takahashi. 1998. Single-strand conformation polymorphism analysis of Apple stem grooving capillovirus sequence variants. Phytopathology 89:136-140.
    • (1998) Phytopathology , vol.89 , pp. 136-140
    • Magome, H.1    Yoshikawa, N.2    Takahashi, T.3
  • 29
    • 0035975649 scopus 로고    scopus 로고
    • Heterogeneous distribution of TT virus of distinct genotypes in multiple tissues from infected humans
    • Okamoto, H., T. Nishizawa, M. Takahashi, S. Asabe, F. Tsuda, and A. Yoshikawa. 2001. Heterogeneous distribution of TT virus of distinct genotypes in multiple tissues from infected humans. Virology 288:358-368.
    • (2001) Virology , vol.288 , pp. 358-368
    • Okamoto, H.1    Nishizawa, T.2    Takahashi, M.3    Asabe, S.4    Tsuda, F.5    Yoshikawa, A.6
  • 30
    • 10644234595 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: Compartmentalization and intrapatient recombination
    • Philpott, S., H. Burger, C. Tsoukas, B. Foley, K. Anastos, C. Kitchen, and B. Weiser. 2005. Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination. J. Virol. 79:353-363.
    • (2005) J. Virol. , vol.79 , pp. 353-363
    • Philpott, S.1    Burger, H.2    Tsoukas, C.3    Foley, B.4    Anastos, K.5    Kitchen, C.6    Weiser, B.7
  • 31
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada, D., and T. R. Buckley. 2004. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53:793-808.
    • (2004) Syst. Biol. , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 32
    • 0034100234 scopus 로고    scopus 로고
    • GeoDis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
    • Posada, D., K. A. Crandall, and A. R. Templeton. 2000. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9:487-488.
    • (2000) Mol. Ecol. , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 34
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas, J., and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 36
    • 0141458956 scopus 로고    scopus 로고
    • Estimation of population bottlenecks during movement of Tobacco mosaic virus in tobacco plants
    • Sacristan, S., J. M. Malpica, A. Fraile, and F. Garcia-Arenal. 2003. Estimation of population bottlenecks during movement of Tobacco mosaic virus in tobacco plants. J. Virol. 77:9906-9911.
    • (2003) J. Virol. , vol.77 , pp. 9906-9911
    • Sacristan, S.1    Malpica, J.M.2    Fraile, A.3    Garcia-Arenal, F.4
  • 37
    • 17544386547 scopus 로고    scopus 로고
    • Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region
    • Sanjuan, R., F. M. Codoner, A. Moya, and S. F. Elena. 2004. Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region. Evol. Int. J. Org. Evol. 58:1185-1194.
    • (2004) Evol. Int. J. Org. Evol. , vol.58 , pp. 1185-1194
    • Sanjuan, R.1    Codoner, F.M.2    Moya, A.3    Elena, S.F.4
  • 38
    • 0033152472 scopus 로고    scopus 로고
    • Perspective: Phloem transport of viruses and macromolecules - What goes in must come out
    • Santa Cruz, S. 1999. Perspective: phloem transport of viruses and macromolecules-what goes in must come out. Trends Microbiol. 7:237-241.
    • (1999) Trends Microbiol. , vol.7 , pp. 237-241
    • Santa Cruz, S.1
  • 39
    • 85082788243 scopus 로고    scopus 로고
    • RNA viruses - Evolution in action
    • Simmonds, P. 2004. RNA viruses-evolution in action. Microbiol. Today 31:163-165.
    • (2004) Microbiol. Today , vol.31 , pp. 163-165
    • Simmonds, P.1
  • 40
    • 0026521195 scopus 로고
    • Human origins and analysis of mitochondrial DNA sequences
    • Templeton, A. R. 1992. Human origins and analysis of mitochondrial DNA sequences. Science 255:737.
    • (1992) Science , vol.255 , pp. 737
    • Templeton, A.R.1
  • 41
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history
    • Templeton, A. R. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7:381-397.
    • (1998) Mol. Ecol. , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 42
    • 0023338893 scopus 로고
    • Nonparametric phylogenetic inference from restriction cleavage sites
    • Templeton, A. R. 1987. Nonparametric phylogenetic inference from restriction cleavage sites. Mol. Biol. Evol. 4:315-323.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 315-323
    • Templeton, A.R.1
  • 43
    • 0029058158 scopus 로고
    • Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
    • Templeton, A. R., E. Routman, and C. A. Phillips. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140:767-782.
    • (1995) Genetics , vol.140 , pp. 767-782
    • Templeton, A.R.1    Routman, E.2    Phillips, C.A.3
  • 44
    • 0024268520 scopus 로고
    • A cladistic analysis of phenotype associations with haplotypes inferred from restriction endonuclease mapping. II. The analysis of natural populations
    • Templeton, A. R., C. F. Sing, A. Kessling, and S. Humphries. 1988. A cladistic analysis of phenotype associations with haplotypes inferred from restriction endonuclease mapping. II. The analysis of natural populations. Genetics 120:1145-1154.
    • (1988) Genetics , vol.120 , pp. 1145-1154
    • Templeton, A.R.1    Sing, C.F.2    Kessling, A.3    Humphries, S.4
  • 45
    • 4043119753 scopus 로고    scopus 로고
    • Population structure and genetic variability within isolates of Grapevine fanleaf virus from a naturally infected vineyard in France: Evidence for mixed infection and recombination
    • Vigne, E., M. Bergdoll, S. Guyader, and M. Fuchs. 2004. Population structure and genetic variability within isolates of Grapevine fanleaf virus from a naturally infected vineyard in France: evidence for mixed infection and recombination. J Gen. Virol. 85:2435-2445.
    • (2004) J. Gen. Virol. , vol.85 , pp. 2435-2445
    • Vigne, E.1    Bergdoll, M.2    Guyader, S.3    Fuchs, M.4
  • 46
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 47
    • 24944485118 scopus 로고    scopus 로고
    • Quasispecies theory in the context of population genetics
    • Wilke, C. O. 2005. Quasispecies theory in the context of population genetics. BMC Evol. Biol. 5:44.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 44
    • Wilke, C.O.1


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