ESTs analyses of Lampetra japonica liver and comparation transcriptome with the jawed vertebrates

Science in China, Series C: Life Sciences

Volumn 51, Issue 1, 2008, Pages 27-37

  Zhu, LiNa ^a   Dai, YaLi ^b   Ma, Fei ^a   Li, QingWei ^a  

^a LIAONING NORMAL UNIVERSITY   (China)

^b ANHUI AGRICULTURAL UNIVERSITY   (China)

Author keywords

Expressed sequence tag (EST); Lampetra japonica; Liver; Transcriptome comparison

Indexed keywords

COMPLEMENTARY DNA; MICRORNA;

3' UNTRANSLATED REGION; ANIMAL; ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENETICS; JAW; LIVER; METABOLISM; VERTEBRATE;

3' UNTRANSLATED REGIONS; ANIMALS; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION PROFILING; JAW; LIVER; MICRORNAS; SEQUENCE ANALYSIS, DNA; VERTEBRATES;

BOS TAURUS; FUNDULUS HETEROCLITUS; GNATHOSTOMATA (VERTEBRATE); HOMO SAPIENS; LETHENTERON JAPONICUM; MUS MUSCULUS; VERTEBRATA;

EID: 38049048884     PISSN: 10069305     EISSN: 18622798     Source Type: Journal    
DOI: 10.1007/s11427-008-0002-3     Document Type: Article

References (38)

1. Janvierg P. Palaeontology: Modern look for ancient lamprey. Nature, 2006, 443: 921-924
2. Zhang K K, Guo W Y, Li X D, et al. Analysis of fatty acids composition in Lampetra japonica muscle. J Fish Sci China (in Chinese), 2000, 7(1): 116-117
3. Mayer W E, Uinukool T, Tichy H, et al. Isolation and characterization of lymphocyte-like cells from a lamprey. Proc Natl Acad Sci, 2002, 99(22): 14350-14355
4. Gao Q, Feng Y, Wu Y, et al. Expressed sequence tags (ESTs) analysis of the oral gland of Lampetra japonica. Acta Genet Sin (in Chinese), 2005, 32(10): 1045-1052
5. Hardisty M W. The skeleton. In: Hardisty M W, Potter I C, eds. The Biology of the Lampreys. London: Academic Press, 1981. 333
6. Murakami Y, Ogasawara M, Satoh N, et al. Compartments in the lamprey embryonic brain as revealed by regulatory gene expression and the distribution of reticulospinal neurons. Brain Res Bull, 2002, 57: 271-275
7. McCauley D W, Bronner-Fraser M. Importance of SoxE in neural crest development and the evolution of the pharynx. Nature, 2006, 441: 750-752
8. Takio Y, Pasqualetti M, Kuraku S, et al. Evolutionary biology: Lamprey Hox genes and the evolution of jaws. Nature, 2004, 416: 386-387
9. Savina M V, Emelyanova L V, Belyaeva E A. Bioenergetic parameters of lamprey and frog liver mitochondria during metabolic depression and activity. Comp Biochem Physiol, 2006, 145: 296-305
10. Rotchell J M, Steventon G B, Bird D J. Catalytic properties of CYP1A isoforms in the liver of an agnathan (Lampetra flu6iatilis) and two species of teleost. Comp Biochem Physiol, 2000, 125: 203-214
11. Gamper N L, Savina M V. Reversible metabolic depression in hepatocytes of lamprey (Lampetra flu6iatilis) during pre-spawning: Regulation by substrate availability. Comp Biochem Physiol, 2000, 127: 147-154
12. Pancer Z, Amemiya C T, Ehrhardt G A, et al. Somatic diversification of variable lymphocyte receptors in the agnathan sea lamprey. Nature, 2004, 430: 174-180
13. Li X X, Feng Y, Xiao R, et al. The construction of Lampetra japonica salivary gland. J Liaoning Normal Univ (in Chinese), 2004, 27(1): 73-75
14. Huang X, Madan A. CAP3: A DNA sequence assembly program. Genome Res, 1999, 9: 868-877
15. Min X J, Butler G, Storms R, et al. TargetIdentifier: A webserver for identifying full-length cDNAs from EST sequences. Nucleic Acids Res, 2005, 33: 669-672
16. Lewis B P, Burge C B, Bartel D P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 2005, 120(1): 15-20
17. Chen Z Z, Xue C H, Zhu S, et al. GoPipe: Streamlined gene ontology annotation for batch anonymous sequences with statistics. Biochem Biophys, 2005, 32(2): 187-191
18. Zdobnov E M, Apweiler R. InterProScan-An integration platform for the signature-recognition methods in InterPro. Bioinformatics, 2001, 17(9): 847-848
19. Chen Z Z, Wang W, Liu J J, et al. GODiff: Mining functional differentiation between EST-based transcriptomes. BioMed Central Bioinformatics, 2006, 7(1): 72
20. Wang F, Zuo M X. Human and Animal Physiology (in Chinese). Beijing: Higher Education Press, 2001
21. Chen P, Gao W P. Chitosan health function. Chin J Food Hygiene (in Chinese), 2001, 13(3): 38-39
22. Long H. Research advances on 10 nonspecific immune molecules of aquatic animals. J Yangtze Univ (in Chinese), 2005, 2(11): 67-72
23. Good R A, Finstad J, Litman G W. The biology of lampreys. II. Immunology, 1972, 1: 405-432
24. Hagen M, Filosa M F, Youson J H. The immune response in adult sea lamprey (Petromyzon marinus L.): The effect of temperature. Comp Biochem Physiol, 1985, 1: 207-210
25. Perey D Y, Finstad J, Pollara B, et al. Evolution of the immune response. VI. First and second set skin homograft rejections in primitive fishes. Lab Investig, 1968, 1: 591-597
26. Srivastava P K, Menoret A, Basu S. Heat shock proteins come of age: Primitive functions acquire new roles in an adaptive world. Immunity, 1998, 8: 657-665
27. Srivastava P. Interaction of heat shock proteins with peptidesand antigen presenting cells: Chaperoning of the innate andadaptive immune responses. Ann Rev Immunol, 2002, (20): 395-425
28. Pontes M, Xu X, Graham D, et al. cDNA sequences of apolipoproteins from lamprey. Biochemistry, 1987, 26(6): 1611-1617
29. Chen T G. Bioinformatics study on transcriptome of human fetal liver aged 22 weeks of gestation and genome of SARS-CoV(BJ-01). Dissertation for Doctoral Degree. Beijing: Academy of Military Medical Sciences (in Chinese), 2005. 91-100
30. Urora E K. Oncomirs-MicroRNAs with a role in cancer. Nat Rev Cancer, 2006, 6(4): 259-269
31. Volinia S, Calin G A, Liu C G, et al. A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci, 2006, 103(7): 2257-2261
32. Wu S F, Zhu Y P, He F C. Progress in the comparison of transcriptome and proteome. Prog Biochem Biophys (in Chinese), 2005, 32(2): 99-105
33. Boot R G, Blommaart E F C, Swart E, et al. Identification of a novel acidic mammalian chitinase distinct from chitotriosidase. J Biol Chem, 2001, 276(9): 6770-6778
34. Suzuki M, Morimatsu M, Yamashita T, et al. A novel serum chitinase that is expressed in bovine liver. FEBS Lett, 2001, 506(2): 127-130
35. Chen L, Shen Z, Liu Y F, et al. Cloning of acidic mammalian chitinase gene mutant and its sequence analysis. Med J Chinese PLA (in Chinese), 2006, 31(3): 231-233
36. Yang W, Gillian E, James M, et al. Human immune responses to infective stage larval-specific chitinase of filarial parasite, Onchocerca volvulus, Ov-CHI-1. Filaria J, 2003, 2(1): 6-20
37. Nishimura K, Nishimura S, Seo H, et al. Macrophage activation with multi-porous beads prepared from partially deacetylated chitin. J Biomed Mater Res, 1986, 20(9): 1359-1372
38. Xiao H. Immunology and antitumor activities of chitin/chitosan and its derivatives. Marine Sci (in Chinese), 1999, 3(3): 30-32