메뉴 건너뛰기




Volumn 32, Issue 2, 2005, Pages 99-105

Progress in the comparison of transcriptome and proteome

Author keywords

Codon bias; Correlation; Proteome; Transcriptome; Translational regulation

Indexed keywords

PROTEOME; TRANSCRIPTOME;

EID: 18644361882     PISSN: 10003282     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (5)

References (37)
  • 1
    • 0344687398 scopus 로고    scopus 로고
    • Interplay of transcriptomics and proteomics
    • Hegde P S, White I R, Debouck C. Interplay of transcriptomics and proteomics. Curr Opin Biotechnol, 2003, 14 (6): 647-651
    • (2003) Curr Opin Biotechnol , vol.14 , Issue.6 , pp. 647-651
    • Hegde, P.S.1    White, I.R.2    Debouck, C.3
  • 3
    • 0030603251 scopus 로고    scopus 로고
    • Expression profiles of active genes in human and mouse livers
    • Kawamoto S, Matsumoto Y, Mizuno K, et al. Expression profiles of active genes in human and mouse livers. Gene, 1996, 174 (1): 151-158
    • (1996) Gene , vol.174 , Issue.1 , pp. 151-158
    • Kawamoto, S.1    Matsumoto, Y.2    Mizuno, K.3
  • 4
    • 0030895921 scopus 로고    scopus 로고
    • A comparison of selected mRNA and protein abundances in human liver
    • Anderson L, Seilhamer J. A comparison of selected mRNA and protein abundances in human liver. Electrophoresis, 1997, 18: 533-537
    • (1997) Electrophoresis , vol.18 , pp. 533-537
    • Anderson, L.1    Seilhamer, J.2
  • 6
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi S P, Rochon Y, Franza B R, et al. Correlation between protein and mRNA abundance in yeast. Mol Cell Biol, 1999, 19 (3): 1720-1730
    • (1999) Mol Cell Biol , vol.19 , Issue.3 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3
  • 7
    • 0032694167 scopus 로고    scopus 로고
    • A sampling of the yeast proteome
    • Futcher B, Latter G I, Monardo P, et al. A sampling of the yeast proteome. Mol Cell Biol, 1999, 19 (11):7357-7368
    • (1999) Mol Cell Biol , vol.19 , Issue.11 , pp. 7357-7368
    • Futcher, B.1    Latter, G.I.2    Monardo, P.3
  • 9
    • 0034703060 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
    • Arfin S M, Long A D, Ito E T, et al. Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J Biol Chem, 2000, 275 (38): 29672-29684
    • (2000) J Biol Chem , vol.275 , Issue.38 , pp. 29672-29684
    • Arfin, S.M.1    Long, A.D.2    Ito, E.T.3
  • 10
    • 0035805255 scopus 로고    scopus 로고
    • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
    • Ideker T, Thorsson V, Ranish J A, et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science, 2001, 292 (5518): 929-934
    • (2001) Science , vol.292 , Issue.5518 , pp. 929-934
    • Ideker, T.1    Thorsson, V.2    Ranish, J.A.3
  • 11
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • Griffin T J, Gygi S P, Ideker T, et al. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics, 2002, 1 (4): 323-333
    • (2002) Mol Cell Proteomics , vol.1 , Issue.4 , pp. 323-333
    • Griffin, T.J.1    Gygi, S.P.2    Ideker, T.3
  • 12
    • 0037453060 scopus 로고    scopus 로고
    • Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
    • Washburn M P, Koller A, Oshiro G, et al. Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc Natl Acad Sci USA, 2003, 100 (6): 3107-3112
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.6 , pp. 3107-3112
    • Washburn, M.P.1    Koller, A.2    Oshiro, G.3
  • 13
    • 0842308382 scopus 로고    scopus 로고
    • Cellular responses to ErbB-2 overexpression in human mammary luminal epithelial cells: Comparison of mRNA and protein expression
    • White S L, Gharbi S, Bertani M F, et al. Cellular responses to ErbB-2 overexpression in human mammary luminal epithelial cells: comparison of mRNA and protein expression. Br J Cancer, 2004, 90 (1): 173-181
    • (2004) Br J Cancer , vol.90 , Issue.1 , pp. 173-181
    • White, S.L.1    Gharbi, S.2    Bertani, M.F.3
  • 14
    • 0037473189 scopus 로고    scopus 로고
    • Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture
    • Yoon S H, Han M J, Lee S Y, et al. Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. Biotechnol Bioeng, 2003, 81 (7): 753-767
    • (2003) Biotechnol Bioeng , vol.81 , Issue.7 , pp. 753-767
    • Yoon, S.H.1    Han, M.J.2    Lee, S.Y.3
  • 15
    • 0036549767 scopus 로고    scopus 로고
    • Discordant protein and mRNA expression in lung adenocarcinomas
    • Chen G, Gharib T G, Huang C C, et al. Discordant protein and mRNA expression in lung adenocarcinomas. Mol Cell Proteomics, 2002, 1 (4):304-313
    • (2002) Mol Cell Proteomics , vol.1 , Issue.4 , pp. 304-313
    • Chen, G.1    Gharib, T.G.2    Huang, C.C.3
  • 16
    • 10744226821 scopus 로고    scopus 로고
    • Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays
    • Nishizuka S, Charboneau L, Young L, et al. Proteomic profiling of the NCI-60 cancer cell lines using new high-density reverse-phase lysate microarrays. Proc Natl Acad Sci USA, 2003, 100 (24): 14229-14234
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.24 , pp. 14229-14234
    • Nishizuka, S.1    Charboneau, L.2    Young, L.3
  • 17
    • 10744224439 scopus 로고    scopus 로고
    • Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria
    • Mootha V K, Bunkenborg J, Olsen J V, et al. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell, 2003, 115 (5): 629-640
    • (2003) Cell , vol.115 , Issue.5 , pp. 629-640
    • Mootha, V.K.1    Bunkenborg, J.2    Olsen, J.V.3
  • 18
    • 0036839597 scopus 로고    scopus 로고
    • Genomic and proteomic analysis of the myeloid differentiation program: Global analysis of gene expression during induced differentiation in the MPRO cell line
    • Lian Z, Kluger Y, Greenbaum D S, et al. Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line. Blood, 2002, 100 (9): 3209-3220
    • (2002) Blood , vol.100 , Issue.9 , pp. 3209-3220
    • Lian, Z.1    Kluger, Y.2    Greenbaum, D.S.3
  • 19
    • 0035186283 scopus 로고    scopus 로고
    • Parallel and comparative analysis of the proteome and transcriptome of sorbic acid-stressed Saccharomyces cerevisiae
    • de Nobel H, Lawrie L, Brul S, et al. Parallel and comparative analysis of the proteome and transcriptome of sorbic acid-stressed Saccharomyces cerevisiae. Yeast, 2001, 18 (15): 1413-1428
    • (2001) Yeast , vol.18 , Issue.15 , pp. 1413-1428
    • De Nobel, H.1    Lawrie, L.2    Brul, S.3
  • 20
    • 0042357079 scopus 로고    scopus 로고
    • Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells
    • Bro C, Regenberg B, Lagniel G, et al. Transcriptional, proteomic, and metabolic responses to lithium in galactose-grown yeast cells. J Biol Chem, 2003, 278 (34): 32141-32149
    • (2003) J Biol Chem , vol.278 , Issue.34 , pp. 32141-32149
    • Bro, C.1    Regenberg, B.2    Lagniel, G.3
  • 21
    • 0346887181 scopus 로고    scopus 로고
    • Proteomic and transcriptomic analysis of interleukin-1 beta treated lung carcinoma cell line
    • Kim C H, Kim do K, Choi S J, et al. Proteomic and transcriptomic analysis of interleukin-1 beta treated lung carcinoma cell line. Proteomics, 2003, 3 (12): 2454-2471
    • (2003) Proteomics , vol.3 , Issue.12 , pp. 2454-2471
    • Kim, C.H.1    Kim Do, K.2    Choi, S.J.3
  • 22
    • 0344873702 scopus 로고    scopus 로고
    • + cells
    • + cells. Exp Mol Med, 2003, 35 (5): 460-466
    • (2003) Exp Mol Med , vol.35 , Issue.5 , pp. 460-466
    • Kim, H.L.1
  • 23
    • 0038777186 scopus 로고    scopus 로고
    • Regulation of alpha-globin mRNA stability
    • Maywood
    • Waggoner S A, Liebhaber S A. Regulation of alpha-globin mRNA stability. Exp Biol Med (Maywood), 2003, 228 (4): 387-395
    • (2003) Exp Biol Med , vol.228 , Issue.4 , pp. 387-395
    • Waggoner, S.A.1    Liebhaber, S.A.2
  • 24
    • 0032845153 scopus 로고    scopus 로고
    • Messenger RNA translation state: The second dimension of high-throughput expression screening
    • Zong Q, Schummer M, Hood L, et al. Messenger RNA translation state: the second dimension of high-throughput expression screening. Proc Natl Acad Sci USA, 1999, 96 (19): 10632-10636
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.19 , pp. 10632-10636
    • Zong, Q.1    Schummer, M.2    Hood, L.3
  • 25
    • 0345602742 scopus 로고    scopus 로고
    • Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock
    • Preiss T, Baron-Benhamou J, Ansorge W, et al. Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat Struct Biol, 2003, 10(12): 1039-1047
    • (2003) Nat Struct Biol , vol.10 , Issue.12 , pp. 1039-1047
    • Preiss, T.1    Baron-Benhamou, J.2    Ansorge, W.3
  • 26
    • 0034736511 scopus 로고    scopus 로고
    • Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs
    • Pesole G, Gissi C, Grillo G, et al. Analysis of oligonucleotide AUG start codon context in eukariotic mRNAs. Gene, 2000, 261 (1): 85-91
    • (2000) Gene , vol.261 , Issue.1 , pp. 85-91
    • Pesole, G.1    Gissi, C.2    Grillo, G.3
  • 27
    • 0025763551 scopus 로고
    • Codon bias and gene expression
    • Kurland C G. Codon bias and gene expression. FEBS Lett, 1991, 285 (2): 165-169
    • (1991) FEBS Lett , vol.285 , Issue.2 , pp. 165-169
    • Kurland, C.G.1
  • 28
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol, 1985, 2 (1): 13-34
    • (1985) Mol Biol Evol , vol.2 , Issue.1 , pp. 13-34
    • Ikemura, T.1
  • 29
    • 0023003380 scopus 로고
    • In vivo half-life of a protein is a function of its amino-terminal residue
    • Bachmair A, Finley D, Varshavsky A. In vivo half-life of a protein is a function of its amino-terminal residue. Science, 1986, 234 (4773): 179-186
    • (1986) Science , vol.234 , Issue.4773 , pp. 179-186
    • Bachmair, A.1    Finley, D.2    Varshavsky, A.3
  • 30
    • 0026766091 scopus 로고
    • The N-end rule
    • Varshavsky A. The N-end rule. Cell, 1992, 69 (5): 725-735
    • (1992) Cell , vol.69 , Issue.5 , pp. 725-735
    • Varshavsky, A.1
  • 31
    • 10944232800 scopus 로고    scopus 로고
    • Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale
    • Beyer A, Hollunder J, Nasheuer H P, et al. Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale. Mol Cell Proteomics, 2004, 3 (11): 1083-1092
    • (2004) Mol Cell Proteomics , vol.3 , Issue.11 , pp. 1083-1092
    • Beyer, A.1    Hollunder, J.2    Nasheuer, H.P.3
  • 32
    • 0036960169 scopus 로고    scopus 로고
    • Integrated genomic and proteomic analysis of signaling pathways in dendritic cell differentiation and maturation
    • Richards J, Le Naour F, Hanash S, et al. Integrated genomic and proteomic analysis of signaling pathways in dendritic cell differentiation and maturation. Ann N Y Acad Sci, 2002, 975: 91-100
    • (2002) Ann N Y Acad Sci , vol.975 , pp. 91-100
    • Richards, J.1    Le Naour, F.2    Hanash, S.3
  • 33
    • 0032961312 scopus 로고    scopus 로고
    • Bromodeoxyuridine induces keratin protein synthesis at a posttranscriptional level in human lung tumour cell lines
    • McBride S, Walsh D, Meleady P, et al. Bromodeoxyuridine induces keratin protein synthesis at a posttranscriptional level in human lung tumour cell lines. Differentiation, 1999, 64 (3): 185-193
    • (1999) Differentiation , vol.64 , Issue.3 , pp. 185-193
    • McBride, S.1    Walsh, D.2    Meleady, P.3
  • 34
    • 0036223585 scopus 로고    scopus 로고
    • Bacillus subtilis functional genomics: Global characterization of the stringent response by proteome and transcriptome analysis
    • Eymann C, Homuth G, Scharf C, et al. Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis. J Bacteriol, 2002, 184 (9): 2500-2520
    • (2002) J Bacteriol , vol.184 , Issue.9 , pp. 2500-2520
    • Eymann, C.1    Homuth, G.2    Scharf, C.3
  • 35
    • 20144368638 scopus 로고    scopus 로고
    • Integrated genomic and proteomic analyses of gene expression in mammalian cells
    • Tian Q, Stepaniants S B, Mao M, et al. Integrated genomic and proteomic analyses of gene expression in mammalian cells. Mol Cell Proteomics, 2004, 3 (10): 960-969
    • (2004) Mol Cell Proteomics , vol.3 , Issue.10 , pp. 960-969
    • Tian, Q.1    Stepaniants, S.B.2    Mao, M.3
  • 36
    • 0036331713 scopus 로고    scopus 로고
    • Functional genomics: High-throughput mRNA, protein, and metabolite analyses
    • Oliver D J, Nikolau B, Wurtele E S. Functional genomics: high-throughput mRNA, protein, and metabolite analyses. Metab Eng, 2002, 4 (1): 98-106
    • (2002) Metab Eng , vol.4 , Issue.1 , pp. 98-106
    • Oliver, D.J.1    Nikolau, B.2    Wurtele, E.S.3
  • 37
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • Kitano H. Systems biology: a brief overview. Science, 2002, 295 (5560): 1662-1664
    • (2002) Science , vol.295 , Issue.5560 , pp. 1662-1664
    • Kitano, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.