Dynamics of biological molecules irradiated by short x-ray pulses

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 69, Issue 5 2, 2004, Pages

  Hau Riege, Stefan P ^a   London, Richard A ^a   Szoke, Abraham ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; CRYSTALLOGRAPHY; DIFFRACTION; FREE ELECTRON LASERS; IMAGE RECONSTRUCTION; IONIZATION; MOLECULAR DYNAMICS; PHOTONS; RADIATION DAMAGE; X RAYS;

DIFFRACTION IMAGES; X-RAY FREE-ELECTRON LASERS (XFEL); X-RAY PHOTONS; X-RAY PULSES;

BIOLOGICAL MATERIALS;

EID: 37649030484     PISSN: 15393755     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. R. Neutze, W. Wouts, D. van der Spoel, E. Weckert, and J. Hajdu, Nature (London) 406, 752 (2000).
2. R. Henderson, Q. Rev. Biophys. 28, 171 (1995).
3. J. Arthur et al., Linac Coherent Light Source (LCLS) Design Study Report No. SLAC-R-521, 1998 (unpublished), also available online at: http://www-ssrl.slac.stanford.edu/lcls/design_report/e-toc.html
4. J. C. Solem and G. F. Chapline, Opt. Eng. 23, 193 (1984).
5. J. C. Solem and G. C. Baldwin, Science 218, 229 (1982).
6. Ya. S. Derbenev, A. M. Kondratenko, and E. L. Saldin, Nucl. Instrum. Methods Phys. Res. A193, 415 (1982).
7. J. B. Murphy and C. Pellegrini, J. Opt. Soc. Am. B 2, 259 (1985).
8. R. F. Service, Science 298, 1356 (2002).
9. F. Richard, J. R. Schneider, D. Trines, and A. Wagner, TESLA Technical Design Report No. 2001-11, 2001 (unpublished), available at the web site http://tesla.desy.de/new_pages/TDR_CD /start.html.
10. G. Huldt, A. Szoke, and J. Hajdu, J. Struct. Biol. 144, 219 (2003).
11. R. Gerchberg and W. Saxton, Optik (Jena) 35, 237 (1972).
12. S. P. Hau-Riege, H. Szoke, H. Chapman, A. Szoke, S. Marchesini, A. Noy, H. He, M. Howells, U. Weierstall, and J. C.H. Spence, Acta Cryst. A (to be published).
13. Z. Jurek, G. Faigel, and M. Tegze, Phys. Rev. B (to be published); Z. Jurek, G. Oszlanyi, and G. Faigel, Europhys. Lett. 65, 491 (2004).
14. Z. Jurek, G. Faigel, and M. Tegze, Phys. Rev. B (to be published); Z. Jurek, G. Oszlanyi, and G. Faigel, Europhys. Lett. 65, 491 (2004).
15. E. J. McGuire, Phys. Rev. 185, 1 (1969).
16. D. A. Verner, D. G. Yakovlev, I. M. Band, and M. B. Trzhaskovskaya, At. Data Nucl. Data Tables 55, 233 (1993).
17. B. Ziaja, A. Szoke, D. van der Spoel, and J. Hajdu, Phys. Rev. B 66, 24 116 (2002).
18. B. L. Henke, E. M. Gullikson, and J. C. Davis, At. Data Nucl. Data Tables 54, 181 (1993).
19. M. A. Lennon, K. L. Bell, H. B. Gilbody, J. G. Hughes, A. E. Kingston, M. J. Murray, and F. J. Smith, J. Phys. Chem. Ref. Data 17, 1285 (1988).
20. K. L. Bell, H. B. Gilbody, J. G. Hughes, A. E. Kingston, and F. J. Smith, J. Phys. Chem. Ref. Data 12, 891 (1983).
21. Y.-K. Kim and M. E. Rudd, Phys. Rev. A 50, 3954 (1983).
22. S. Chelkowski and A. D. Bandruk, J. Phys. B 28, L723 (1995).
23. B. Ziaja, A. Szoke, R. A. London, and J. Hajdu (unpublished).
24. R. D. Richtmyer and K. W. Morton, Difference Methods for Initial-Value Problems, 2nd ed. (Krieger Publishing, Melbourne, 1994).
25. J. von Neumann and R. D. Richtmyer, J. Appl. Phys. 21, 232 (1950).
26. E. J. Caramana, M. J. Shahkov, and P. P. Whalen, J. Comput. Phys. 144, 70 (1998).
27. R. Courant, K. O. Friedrichs, and H. Lewy, Math. Ann. 100, 32 (1928).
28. W. H. Press, B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling, Numerical Recipes in C, 2nd Ed. (Cambridge University Press, Cambridge, 1993).
29. H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P. E. Bourne, Nucleic Acids Res. 28, 235 (2000).
30. H. R. Griem, Principles of Plasma Spectroscopy (Cambridge University Press, Cambridge 1997), p. 167-172.