메뉴 건너뛰기




Volumn 65, Issue 6, 2007, Pages 660-667

Patterns of concerted evolution of the rDNA family in a natural population of Zhikong scallop, Chlamys farreri

Author keywords

Chlamys farreri; Concerted evolution; Denaturing high performance liquid chromatography (DHPLC); Internal transcribed spacer (ITS)

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RIBOSOME DNA;

EID: 37549063063     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-007-9039-3     Document Type: Article
Times cited : (5)

References (42)
  • 3
    • 0031135337 scopus 로고    scopus 로고
    • Recombinant DNA sequences generated by PCR amplification
    • Bradley RD, Hillis DM (1997) Recombinant DNA sequences generated by PCR amplification. Mol Biol Evol 14:592-593
    • (1997) Mol Biol Evol , vol.14 , pp. 592-593
    • Bradley, R.D.1    Hillis, D.M.2
  • 4
    • 0031035491 scopus 로고    scopus 로고
    • The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
    • Buckler ESIV, Ippolito A, Holtsford TP (1997) The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145:821-832
    • (1997) Genetics , vol.145 , pp. 821-832
    • Esiv, B.1    Ippolito, A.2    Holtsford, T.P.3
  • 5
    • 0030087851 scopus 로고    scopus 로고
    • Two-dimensional RFLP analysis reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution
    • Copenhaver GP, Pikaard CS (1996) Two-dimensional RFLP analysis reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution. Plant J 9:273-282
    • (1996) Plant J , vol.9 , pp. 273-282
    • Copenhaver, G.P.1    Pikaard, C.S.2
  • 7
    • 0020478245 scopus 로고
    • Molecular drive: A cohesive mode of species evolution
    • Dover G (1982) Molecular drive: a cohesive mode of species evolution. Nature 299:111-117
    • (1982) Nature , vol.299 , pp. 111-117
    • Dover, G.1
  • 8
    • 0024672389 scopus 로고
    • Linkage disequilibrium and molecular drive in the rDNA gene family
    • Dover G (1989) Linkage disequilibrium and molecular drive in the rDNA gene family. Genetics 122:249-252
    • (1989) Genetics , vol.122 , pp. 249-252
    • Dover, G.1
  • 9
    • 0029360612 scopus 로고
    • Concerted evolution of repetitive DNA sequences in eukaryotes
    • Elder JF, Turner BJ (1995) Concerted evolution of repetitive DNA sequences in eukaryotes. Q Rev Biol 70:297-320
    • (1995) Q Rev Biol , vol.70 , pp. 297-320
    • Elder, J.F.1    Turner, B.J.2
  • 10
    • 0038059078 scopus 로고    scopus 로고
    • The use of denaturing high-performance liquid chromatography (DHPLC) for the analysis of genetic variations: Impact for diagnostics and pharmacogenetics
    • Frueh FW, Noyer-Weidner M (2003) The use of denaturing high-performance liquid chromatography (DHPLC) for the analysis of genetic variations: impact for diagnostics and pharmacogenetics. Clin Chem Lab Med 41:452-461
    • (2003) Clin Chem Lab Med , vol.41 , pp. 452-461
    • Frueh, F.W.1    Noyer-Weidner, M.2
  • 11
    • 0031732104 scopus 로고    scopus 로고
    • Extraordinary ribosomal spacer length heterogeneity in a Neotyphodium endophyte hybrid: Implications for concerted evolution
    • Ganley ARD, Scott B (1998) Extraordinary ribosomal spacer length heterogeneity in a Neotyphodium endophyte hybrid: implications for concerted evolution. Genetics 150:1625-1637
    • (1998) Genetics , vol.150 , pp. 1625-1637
    • Ganley, A.R.D.1    Scott, B.2
  • 12
    • 0036350618 scopus 로고    scopus 로고
    • Concerted evolution in the ribosomal RNA genes of an Epichloe endophyte hybrid: Comparison between tandemly arranged rDNA and dispersed 5S rrn genes
    • Ganley ARD, Scott B (2002) Concerted evolution in the ribosomal RNA genes of an Epichloe endophyte hybrid: comparison between tandemly arranged rDNA and dispersed 5S rrn genes. Fungal Genet Biol 35:39-51
    • (2002) Fungal Genet Biol , vol.35 , pp. 39-51
    • Ganley, A.R.D.1    Scott, B.2
  • 13
    • 0035338424 scopus 로고    scopus 로고
    • Human rDNA: Evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes
    • Gonzalez IL, Sylvester JE (2001) Human rDNA: evolutionary patterns within the genes and tandem arrays derived from multiple chromosomes. Genomics 73:255-263
    • (2001) Genomics , vol.73 , pp. 255-263
    • Gonzalez, I.L.1    Sylvester, J.E.2
  • 14
    • 0030887616 scopus 로고    scopus 로고
    • Nucleolin is one component of the B cell-specific transcription factor and switch region binding protein, LR1
    • Hanakahi LA, Dempsey LA, Li M-J, Maizels N (1997) Nucleolin is one component of the B cell-specific transcription factor and switch region binding protein, LR1. Proc Natl Acad Sci USA 94:3605-3610
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 3605-3610
    • Hanakahi, L.A.1    Dempsey, L.A.2    Li, M.-J.3    Maizels, N.4
  • 15
    • 0024510279 scopus 로고
    • Topology and formation of triple-stranded H-DNA
    • Htun H, Dahlberg JE (1989) Topology and formation of triple-stranded H-DNA. Science 243:1571-1576
    • (1989) Science , vol.243 , pp. 1571-1576
    • Htun, H.1    Dahlberg, J.E.2
  • 16
    • 0035148221 scopus 로고    scopus 로고
    • Apparent recombination or gene conversion in the ribosomal ITS region of a Flammulina (Fungi, Agaricales) hybrid
    • Hughes KW, Petersen RH (2001) Apparent recombination or gene conversion in the ribosomal ITS region of a Flammulina (Fungi, Agaricales) hybrid. Mol Biol Evol 18:94-96
    • (2001) Mol Biol Evol , vol.18 , pp. 94-96
    • Hughes, K.W.1    Petersen, R.H.2
  • 17
    • 0024506252 scopus 로고
    • Nucleotide sequence of an unequal sister chromatid exchange site in a mouse myeloma cell line
    • Katzenberg DR, Tilley SA, Birshtein BK (1989) Nucleotide sequence of an unequal sister chromatid exchange site in a mouse myeloma cell line. Mol Cell Biol 9:1324-1326
    • (1989) Mol Cell Biol , vol.9 , pp. 1324-1326
    • Katzenberg, D.R.1    Tilley, S.A.2    Birshtein, B.K.3
  • 18
    • 0012858325 scopus 로고
    • Karyotypes of four species in the Pectinindae (Bivalvia: Pteriomorphia)
    • Komaru A, Wada KT (1985) Karyotypes of four species in the Pectinindae (Bivalvia: Pteriomorphia). Jap Jour Malac 44:249-259
    • (1985) Jap Jour Malac , vol.44 , pp. 249-259
    • Komaru, A.1    Wada, K.T.2
  • 20
    • 0033360956 scopus 로고    scopus 로고
    • Concerted evolution: Molecular mechanism and biological implications
    • Liao D (1999) Concerted evolution: molecular mechanism and biological implications. Am J Hum Genet 64:24-30
    • (1999) Am J Hum Genet , vol.64 , pp. 24-30
    • Liao, D.1
  • 21
    • 0029610843 scopus 로고
    • n microsatellite embedded within the U2 repeat unit
    • n microsatellite embedded within the U2 repeat unit. Genomics 30:583-593
    • (1995) Genomics , vol.30 , pp. 583-593
    • Liao, D.1    Weiner, A.M.2
  • 22
    • 0031033604 scopus 로고    scopus 로고
    • Concerted evolution of the tandemly repeated genes encoding human U2 snRNA (the RNU2 locus) involves rapid intrachromosomal homogenization and rare interchromosomal gene conversion
    • Liao D, Pavelitz T, Kidd JR, Kidd KK, Weiner AM (1997) Concerted evolution of the tandemly repeated genes encoding human U2 snRNA (the RNU2 locus) involves rapid intrachromosomal homogenization and rare interchromosomal gene conversion. EMBO J 16:588-598
    • (1997) EMBO J , vol.16 , pp. 588-598
    • Liao, D.1    Pavelitz, T.2    Kidd, J.R.3    Kidd, K.K.4    Weiner, A.M.5
  • 23
    • 0036755182 scopus 로고    scopus 로고
    • Identification of four scallop species using PCR and restriction analysis of the ribosomal DNA internal transcribed spacer region
    • Lopez-Pinon MJ, Insua A, Mendez J (2002) Identification of four scallop species using PCR and restriction analysis of the ribosomal DNA internal transcribed spacer region. Mar Biotechnol 4:495-502
    • (2002) Mar Biotechnol , vol.4 , pp. 495-502
    • Lopez-Pinon, M.J.1    Insua, A.2    Mendez, J.3
  • 24
    • 3242795199 scopus 로고    scopus 로고
    • Within- and between-individual sequence variation among ITS1 copies in the meadow grasshopper Chorthippus parallelus indicates frequent intrachromosomal gene conversion
    • Parkin EJ, Butlin RK (2004) Within- and between-individual sequence variation among ITS1 copies in the meadow grasshopper Chorthippus parallelus indicates frequent intrachromosomal gene conversion. Mol Biol Evol 21:1595-1601
    • (2004) Mol Biol Evol , vol.21 , pp. 1595-1601
    • Parkin, E.J.1    Butlin, R.K.2
  • 26
    • 15944412560 scopus 로고    scopus 로고
    • Gene conversion and concerted evolution in bacterial genomes
    • Santoyo G, Romero D (2005) Gene conversion and concerted evolution in bacterial genomes. FEMS Microbiol Revs 29:169-183
    • (2005) FEMS Microbiol Revs , vol.29 , pp. 169-183
    • Santoyo, G.1    Romero, D.2
  • 27
    • 0028500562 scopus 로고
    • Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution
    • Schlotterer C, Tautz D (1994) Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchanges drive concerted evolution. Curr Biol 4:777-783
    • (1994) Curr Biol , vol.4 , pp. 777-783
    • Schlotterer, C.1    Tautz, D.2
  • 28
    • 0028266426 scopus 로고
    • Comparative evolutionary analysis of rDNA ITS regions in Drosophila
    • Schlotterer C, Hauser MT, von Haeseler A, Tautz D (1994) Comparative evolutionary analysis of rDNA ITS regions in Drosophila. Mol Biol Evol 11:513-522
    • (1994) Mol Biol Evol , vol.11 , pp. 513-522
    • Schlotterer, C.1    Hauser, M.T.2    Von Haeseler, A.3    Tautz, D.4
  • 29
    • 0017294484 scopus 로고
    • Evolution of repeated DNA sequences by unequal crossover
    • Smith GP (1976) Evolution of repeated DNA sequences by unequal crossover. Science 191:528-535
    • (1976) Science , vol.191 , pp. 528-535
    • Smith, G.P.1
  • 30
    • 0002641864 scopus 로고
    • Hotspots of homologous recombination in mammalian genomes
    • Steinmetz M, Uematsu Y, Lindahl KF (1987) Hotspots of homologous recombination in mammalian genomes. Trends in Genetics 31:7-10
    • (1987) Trends in Genetics , vol.31 , pp. 7-10
    • Steinmetz, M.1    Uematsu, Y.2    Lindahl, K.F.3
  • 31
    • 0021928136 scopus 로고
    • Recombination between poly[d(GT)•d(CA)] sequences in simian virus 40-infected cultured cells
    • Stringer JR (1985) Recombination between poly[d(GT)•d(CA)] sequences in simian virus 40-infected cultured cells. Mol Cell Biol 5:1247-1259
    • (1985) Mol Cell Biol , vol.5 , pp. 1247-1259
    • Stringer, J.R.1
  • 32
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 34
    • 0022816108 scopus 로고
    • n promotes reciprocal exchange and generates unusual recombinant tetrads during yeast meiosis
    • n promotes reciprocal exchange and generates unusual recombinant tetrads during yeast meiosis. Mol Cell Biol 6:3934-3947
    • (1986) Mol Cell Biol , vol.6 , pp. 3934-3947
    • Treco, D.1    Arnheim, N.2
  • 35
    • 0027140751 scopus 로고
    • Nuclear DNA markers of the Australian tetraploid Microseris scapigera and its North American diploid relatives
    • Van Houten WHJ, Scarlett N, Bachmann K (1993) Nuclear DNA markers of the Australian tetraploid Microseris scapigera and its North American diploid relatives. Theor Appl Genet 87:498-505
    • (1993) Theor Appl Genet , vol.87 , pp. 498-505
    • Van Houten, W.H.J.1    Scarlett, N.2    Bachmann, K.3
  • 36
    • 0025190946 scopus 로고
    • Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells
    • Wahls WP, Wallace LJ, Moore PD (1990) Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells. Cell 60:95-103
    • (1990) Cell , vol.60 , pp. 95-103
    • Wahls, W.P.1    Wallace, L.J.2    Moore, P.D.3
  • 37
    • 34247580163 scopus 로고    scopus 로고
    • Analysis of the secondary structure of ITS1 in Pectinidae: Implications for phylogenetic reconstruction and structural evolution
    • Wang S, Bao Z, Li N, Zhang L, Hu J (2007) Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution. Mar Biotechnol 9:231-242
    • (2007) Mar Biotechnol , vol.9 , pp. 231-242
    • Wang, S.1    Bao, Z.2    Li, N.3    Zhang, L.4    Hu, J.5
  • 38
    • 33645302928 scopus 로고    scopus 로고
    • A new strategy for species identification of planktonic larvae: PCR-RFLP analysis of the internal transcribed spacer region of ribosomal DNA detected by agarose gel electrophoresis or DHPLC
    • Wang S, Bao Z, Zhang L, Li N, Zhan A, Guo W, Wang X, Hu J (2006) A new strategy for species identification of planktonic larvae: PCR-RFLP analysis of the internal transcribed spacer region of ribosomal DNA detected by agarose gel electrophoresis or DHPLC. J Plankton Res 28:375-384
    • (2006) J Plankton Res , vol.28 , pp. 375-384
    • Wang, S.1    Bao, Z.2    Zhang, L.3    Li, N.4    Zhan, A.5    Guo, W.6    Wang, X.7    Hu, J.8
  • 39
    • 11144228680 scopus 로고    scopus 로고
    • Chromosomal Rearrangement in Pectinidae Revealed by rRNA Loci and Implications for Bivalve Evolution
    • Wang Y, Guo X (2004) Chromosomal Rearrangement in Pectinidae Revealed by rRNA Loci and Implications for Bivalve Evolution. Biol Bull 207:247-256
    • (2004) Biol Bull , vol.207 , pp. 247-256
    • Wang, Y.1    Guo, X.2
  • 40
    • 0029366126 scopus 로고
    • An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression
    • Wendel JF, Schnabel A, Seelanan T (1995) An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Mol Phylogenet Evol 4:298-313
    • (1995) Mol Phylogenet Evol , vol.4 , pp. 298-313
    • Wendel, J.F.1    Schnabel, A.2    Seelanan, T.3
  • 41
    • 0024692112 scopus 로고
    • Reciprocal recombination and the evolution of the ribosomal gene family of Drosophila melanogaster
    • Williams SM, Kennison JA, Robbins LG, Strobeck C (1989) Reciprocal recombination and the evolution of the ribosomal gene family of Drosophila melanogaster. Genetics 122:617-624
    • (1989) Genetics , vol.122 , pp. 617-624
    • Williams, S.M.1    Kennison, J.A.2    Robbins, L.G.3    Strobeck, C.4
  • 42
    • 0034999807 scopus 로고    scopus 로고
    • Denaturing high-performance liquid chromatography: A review
    • Xiao W, Oefner PJ (2001) Denaturing high-performance liquid chromatography: a review. Hum Mutat 17:439-474
    • (2001) Hum Mutat , vol.17 , pp. 439-474
    • Xiao, W.1    Oefner, P.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.