STR polymorphism of mtDNA D-loop in rhesus macaques of Bangladesh

Primates

Volumn 49, Issue 1, 2008, Pages 69-72

  Feeroz, Mohammed Mostafa ^a   Hasan, Kamrul ^a   Hamada, Yuzuru ^b   Kawamoto, Yoshi ^b  

^a JAHANGIRNAGAR UNIVERSITY   (Bangladesh)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

Bangladesh; D loop; mtDNA; Rhesus macaques; STR

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA; PRIMER DNA;

GEOGRAPHICAL DISTRIBUTION; MITOCHONDRIAL DNA; PHYLOGENETICS; POLYMORPHISM; POPULATION GENETICS; PRIMATE;

ANIMAL; ARTICLE; BANGLADESH; BIOLOGICAL MODEL; CLUSTER ANALYSIS; COMPARATIVE STUDY; DEMOGRAPHY; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; HAPLOTYPE; MACACA; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; STATISTICAL MODEL;

ANIMALS; BANGLADESH; BASE SEQUENCE; CLUSTER ANALYSIS; DEMOGRAPHY; DNA PRIMERS; DNA, MITOCHONDRIAL; HAPLOTYPES; LIKELIHOOD FUNCTIONS; MACACA MULATTA; MICROSATELLITE REPEATS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA;

ASIA; BANGLADESH; EURASIA; SOUTH ASIA;

MACACA; MACACA MULATTA; MAMMALIA;

EID: 37549055062     PISSN: 00328332     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10329-007-0047-0     Document Type: Article

References (27)

1. Abegg C, Thierry B (2002) Macaque evolution and dispersal in insular south-east Asia. Biol J Linn Soc 75:555-576
2. Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552
3. Ellergren H (2004) Microsatellites: Simple sequences with complex evolution. Nat Rev Genet 5:435-445
4. Feeroz MM (2001) Species diversity and population density of non-human primates in north-east and south-east of Bangladesh. Ecoprint 8:53-57
5. Feeroz MM, Islam MA, Kabir MM (1995) Status distribution and conservation of primates of Bangladesh. Kyoto Univ Overseas Res Rep Stud Asian Non-Human Primates 9:73-82
6. Fooden J (2000) Systematic review of the rhesus macaques, Macaca mulatta (Zimmermann, 1780). Fieldiana Zool 96:180
7. Gittins SP, Akonda AW (1982) What survives in Bangladesh? Oryx 16:275-281
8. Green KM (1978) Primates of Bangladesh: A priliminary survey of population and habitat. Biol Conserv 13:11-160
9. Hayaishi S, Kawamoto Y (2006) Low genetic diversity and biased distribution of mitochondrial DNA haplotypes in the Japanese macaque (Macaca fuscata yakui) on Yakushima Island. Primates 47:158-164
10. Hayasaka K, Horai S, Gojobori T, Shotake T, Nozawa K, Matsunaga E (1988) Phylogenetic relationships among Japanese, rhesus, Formosan, and crab-eating monkeys, inferred from restriction-enzyme analysis of mitochondrial DNAs. Mol Biol Evol 5:270-281
11. Hayasaka K, Ishida T, Horai S (1991) Heteroplasmy and polymorphism in the major noncoding region of mitochondrial DNA in Japanese monkeys: association with tandemly repeated sequences. Mol Biol Evol 8:399-415
12. Kawamoto Y, Aimi M, Wangchuk T, Sherub (2006) Distribution of Assamese macaques (Macaca assamensis) in the inner Himalayan region of Bhutan and their mtDNA diversity. Primates 47:388-392
13. Kawamoto Y, Shotake T, Nozawa K, Kawamoto S, Tomari K, Kawai S, Shirai K, Morimitsu Y, Takagi N, Akaza H, Fujii H, Hagihara K, Aizawa K, Akachi S, Oi T, Hayaishi S (2007) Postglacial population expansion of Japanese macaques (Macaca fuscata) inferred from mitochondrial DNA phylogeography. Primates 48:27-40
14. Khan MAR, Ahsan AW (1981) The population status of the non-human primates of Bangladesh. Report of University Grants Commission, Dhaka
15. Larizza A, Pesole G, Reyes A, Sbisà E, Saccone C (2002) Lineage specificity of the evolutionary dynamics of the mtDNA D-loop region in rodents. J Mol Evol 54:145-55
16. Litt M, Luty JA (1989) A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 44:397-401
17. Matson CW, Baker RJ (2001) DNA sequence variation in the mitochondrial control region of red-backed voles (Clethrionomys). Mol Biol Evol 18:1494-1501
18. Posada D, Crandall KA (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818
19. Rogers J, Bergstrom M, Garcia R, Kaplan J, Arya A, Novakowski L, Johnson Z, Vinson A, Shelledy W (2005) A panel of 20 highly variable microsatellite polymorphisms in rhesus macaques (Macaca mulatta) selected for pedigree or population genetic analysis. Am J Primatol 67:377-383
20. Sbisà E, Tanzariello F, Reyes A, Pesole G, Saccone C (1997) Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205:125-140
21. Smith DG, McDonough J (2005) Mitochondrial DNA variation in Chinese and Indian rhesus macaques (Macaca mulatta). Am J Primatol 65:1-25
22. Stanford CB (1991) The capped langur in Bangladesh: Behavioral ecology and reproductive tactics (Contributions to Primatology, vol 26). Karger, Basel
23. Swofford DL (1998) PAUP*. Phylogenetic analysis using parsimony (and other methods). Version 4. Sinauer Associates, Sunderland
24. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res 24:4876-4882
25. Tosi AJ, Morales JC, Melnick DJ (2003) Paternal, maternal, and biparental molecular markers provide unique windows onto the evolutionary history of macaque monkeys. Evolution 57:1419-1435
26. Walberg MW, Clayton DA (1981) Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res 9:541l-5421
27. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms, which can be typed using the polymerase chain reaction. Am J Hum Genet 44:388-396