Mitochondrial DNA sequence and haplotype variation analysis in the chicken (Gallus gallus)

Journal of Heredity

Volumn 98, Issue 7, 2007, Pages 723-726

  Guan, Xiaojing ^a   Geng, Tuoyu ^a   Silva, Pradeepa ^a,b   Smith, Edward J ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^b UNIVERSITY OF PERADENIYA   (Sri Lanka)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; MITOCHONDRIAL DNA; NUCLEOTIDE;

ARTICLE; CHICKEN; COMPUTER MODEL; CONTROLLED STUDY; DNA SEQUENCE; EGG; GALLUS GALLUS; GENETIC VARIABILITY; GENOME; HAPLOTYPE; MEAT; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SAMPLE SIZE; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BASE SEQUENCE; CHICKENS; DNA PRIMERS; DNA, MITOCHONDRIAL; HAPLOTYPES; LINKAGE DISEQUILIBRIUM; POLYMORPHISM, SINGLE NUCLEOTIDE; VARIATION (GENETICS);

GALLUS GALLUS;

EID: 37549044172     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esm094     Document Type: Article

References (23)

1. Chinnery PF, Schon EA. 2003. Mitochondria. J Neurol Neurosurg Psychiatry. 74:1188-1199.
2. Desjardins P, Morais R. 1990. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J Mol Biol. 212:599-634.
3. DiMauro S. 2004. Mitochondrial diseases. Biochim Biophys Acta. 1658:80-88.
4. Froman DP, Kirby JD. 2005. Sperm mobility: phenotype in roosters (Gallus domesticus) determined by mitochondrial function. Biol Reprod. 72:562-567.
5. Gordon D, Abajian C, Green P. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
6. Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
7. Jenuth JP, Peterson AC, Shoubridge EA. 1997. Tissue-specific selection for different mtDNA genotypes in heteroplasmic mice. Nat Genet. 16:93-95.
8. Johnson KR, Zheng QY, Bykhovskaya Y, Spirina O, Fischel-Ghodsian N. 2001. A nuclear-mitochondrial DNA interaction affecting hearing impairment in mice. Nat Genet. 27:191-194.
9. Li S, Aggrey SE, Zadworny D, Fairfull W, Kuhnlein U. 1998. Evidence for a genetic variation in mitochondrial genome affecting traits in White Leghorn chickens. J Hered. 89:222-226.
10. Lin KC, Xu J, Gyenai KB, Pyle R, Smith EJ. 2006. Candidate gene expression analysis of toxin-induced dilated cardiomyopathy in the turkey, Meleagris gallopavo. Poult Sci. 85:2216-2221.
11. Linnane AW, Marzuki S, Ozawa T, Tanaka M. 1989. Mitochondrial DNA mutation as an important contributor to aging and degenerative diseases. Lancet. 1:642-645.
12. Maassen JA, Hart LM, Essen E, Heine BJ, Nijpels G, Tafrechi RSJ, Raap AK, Janssen GMC, Lemkes HHPJ. 2004. Mitochondrial diabetes: molecular mechanisms and clinical presentation. Diabetes. 53:S104-109.
13. Mannen H, Morimoto M, Oyama K, Mukai F, Tsuji S. 2003. Identification of mitochondrial DNA substitutions related to meat quality in Japanese Black cattle. J Anim Sci. 81:68-73.
14. Moreno-Loshuertos R, Ac?́n-Pérez R, Fernández-Silva P, Movilla N, Pérez-Martos A, Rodriguez de Cordoba S, Gallardo ME, Enr?́quez JA. 2006. Differences in reactive oxygen species production explain the phenotypes associated with common mouse mitochondrial DNA variants. Nat Genet. 38:1261-1268.
15. Nishibori M, Hanazono M, Yamamoto Y, Tsudzuki M, Yasue H. 2003. Complete nucleotide sequence of mitochondrial DNA in chickens, White Leghorn and White Plymouth Rock. Anim Sci J. 74:437-439.
16. Raymond M, Rousset F. 1995. GENEPOP (Version 1.2): population genetics software for exact tests and ecumenicism. J Hered. 86:248-249.
17. Smith EJ, Shi L, Prevost L, Drummond P, Ramlal S, Smith G, Pierce K, Foster J. 2001. Expressed sequence tags for the chicken genome from a normalized, ten-day-old White Leghorn whole embryo cDNA library. J Hered. 92:1-8.
18. Sorenson MD, Ast JC, Dimcheff DE, Yuri T, Mindell DP. 1999. Primers for a PCR based approach to mitochondrial genome sequencing in birds and other vertebrates. Mol Phylogenet Evol. 12:105-114.
19. Troen BR. 2003. The biology of aging. Mt Sinai J Med. 70:3-28.
20. Wada Y, Yamada Y, Nishibori M, Yasue H. 2004. Complete nucleotide sequence of mitochondrial genome in silkie fowl (Gallus gallus var. domesticus). J Poult Sci. 41:76-82.
21. Wallace DC. 2005. A mitochondrial paradigm of metabolic and degenerative diseases, aging and cancer: a dawn for evolutionary medicine. Annu Rev Genet. 39:359-407.
22. Zanssen S, Schon EA. 2005. Mitochondrial DNA mutations in cancer. PLoS Med. 2:1082-1084.
23. Zeviani M, Donato SD. 2004. Mitochondrial disorders. Brain. 127:2153-2172.