-
1
-
-
0034092009
-
DNA methylation: Past, present and future directions
-
Robertson,K.D. and Jones,P.A. (2000) DNA methylation: Past, present and future directions. Carcinogenesis, 21, 461-467.
-
(2000)
Carcinogenesis
, vol.21
, pp. 461-467
-
-
Robertson, K.D.1
Jones, P.A.2
-
2
-
-
2642531973
-
Epigenetics in human disease and prospects for epigenetic therapy
-
Egger,G., Liang,G., Aparicio,A. and Jones,P.A. (2004) Epigenetics in human disease and prospects for epigenetic therapy. Nature, 429 457-463.
-
(2004)
Nature
, vol.429
, pp. 457-463
-
-
Egger, G.1
Liang, G.2
Aparicio, A.3
Jones, P.A.4
-
4
-
-
34249275353
-
Phenotypic plasticity and the epigenetics of human disease
-
Feinberg,A.P. (2007) Phenotypic plasticity and the epigenetics of human disease. Nature, 447, 433-440.
-
(2007)
Nature
, vol.447
, pp. 433-440
-
-
Feinberg, A.P.1
-
5
-
-
0034801809
-
DNA methylation in genomic imprinting, development, and disease
-
Paulsen,M. and Ferguson-Smith,A.C. (2001) DNA methylation in genomic imprinting, development, and disease. J. Pathol., 195, 97-110.
-
(2001)
J. Pathol
, vol.195
, pp. 97-110
-
-
Paulsen, M.1
Ferguson-Smith, A.C.2
-
6
-
-
0036274359
-
The fundamental role of epigenetic events in cancer
-
Jones,P.A. and Baylin,S.B. (2002) The fundamental role of epigenetic events in cancer. Nat. Rev. Genet., 3, 415-428.
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 415-428
-
-
Jones, P.A.1
Baylin, S.B.2
-
7
-
-
33845417885
-
The cancer epigenome-components and functional correlates
-
Ting,A.H., McGarvcy,K.M. and Baylin,S.B. (2006) The cancer epigenome-components and functional correlates. Genes Dev., 20 3215-3231.
-
(2006)
Genes Dev
, vol.20
, pp. 3215-3231
-
-
Ting, A.H.1
McGarvcy, K.M.2
Baylin, S.B.3
-
8
-
-
0343621494
-
Aberrant CpG-island methylation has non-random and turnour-type-specific patterns
-
Costello,J.F., Frühwald,M.C., Smiraglia,D.J., Rush,L.J., Robertson,G.P., Gao,X., Wright,F.A., Feramisco,J.D., Peltomäki,P. et al. (2000) Aberrant CpG-island methylation has non-random and turnour-type-specific patterns. Nat. Genet., 24, 132-138.
-
(2000)
Nat. Genet
, vol.24
, pp. 132-138
-
-
Costello, J.F.1
Frühwald, M.C.2
Smiraglia, D.J.3
Rush, L.J.4
Robertson, G.P.5
Gao, X.6
Wright, F.A.7
Feramisco, J.D.8
Peltomäki, P.9
-
9
-
-
0035870248
-
A gene hypermethylation profile of human cancer
-
Esteller,M., Corn,P.G., Baylin,S.B. and Herman,J.G. (2001) A gene hypermethylation profile of human cancer. Cancer Res., 61, 3225-3229.
-
(2001)
Cancer Res
, vol.61
, pp. 3225-3229
-
-
Esteller, M.1
Corn, P.G.2
Baylin, S.B.3
Herman, J.G.4
-
10
-
-
0011964662
-
Tumour class prediction and discovery by microarray-based DNA methylation analysis
-
Adorjan,P., Distler,J., Lipscher,E., Model,F., Muller,J., Pelet,C., Braun,A., Florl,A.R., Gutig,D. et al. (2002) Tumour class prediction and discovery by microarray-based DNA methylation analysis. Nucleic Acids Res., 30, e21.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Adorjan, P.1
Distler, J.2
Lipscher, E.3
Model, F.4
Muller, J.5
Pelet, C.6
Braun, A.7
Florl, A.R.8
Gutig, D.9
-
11
-
-
0038576158
-
The power and the promise of DNA methylation markers
-
Laird,P.W. (2003) The power and the promise of DNA methylation markers. Nat. Rev. Cancer, 3, 253-266.
-
(2003)
Nat. Rev. Cancer
, vol.3
, pp. 253-266
-
-
Laird, P.W.1
-
12
-
-
33947315736
-
Cancer epigenomics: DNA methylomes and histone-modification maps
-
Esteller,M. (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat. Rev. Genet., 8, 286-298.
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 286-298
-
-
Esteller, M.1
-
13
-
-
33845900454
-
Mining methylation for early detection of common cancers
-
Brena,R.M., Plass,C. and Costello,J.F. (2006) Mining methylation for early detection of common cancers. PLoS. Med., 3, e479.
-
(2006)
PLoS. Med
, vol.3
-
-
Brena, R.M.1
Plass, C.2
Costello, J.F.3
-
14
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
-
Frommer,M., McDonald,L.E., Millar,D.S., Collis,C.M., Watt,F., Grigg,G.W., Molloy,P.L. and Paul,C.L. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl Acad. Sci. USA, 89, 1827-1831.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
McDonald, L.E.2
Millar, D.S.3
Collis, C.M.4
Watt, F.5
Grigg, G.W.6
Molloy, P.L.7
Paul, C.L.8
-
15
-
-
0028096611
-
High sensitivity mapping of methylated cytosines
-
Clark,S.J., Harrison,J., Paul,C.L. and Frommer,M. (1994) High sensitivity mapping of methylated cytosines. Nucleic Acids Res., 22, 2990-2997.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2990-2997
-
-
Clark, S.J.1
Harrison, J.2
Paul, C.L.3
Frommer, M.4
-
16
-
-
0029843950
-
-
Herman,J.G., GraffJ.R., Myöhänen,S., Nelkin,B.D. and Baylin,S.B. (1996) Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands. Proc. Natl Acad. Sci. USA, 93, 9821-9826.
-
Herman,J.G., GraffJ.R., Myöhänen,S., Nelkin,B.D. and Baylin,S.B. (1996) Methylation-specific PCR: A novel PCR assay for methylation status of CpG islands. Proc. Natl Acad. Sci. USA, 93, 9821-9826.
-
-
-
-
17
-
-
0030738231
-
Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE)
-
Gonzalgo,M.L. and Jones,P.A. (1997) Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res., 25 2529-2531.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2529-2531
-
-
Gonzalgo, M.L.1
Jones, P.A.2
-
18
-
-
0034654669
-
MethyLight: A high-throughput assay to measure DNA methylation
-
Eads,C.A., Danenberg,K.D., Kawakami,K., Saltz,L.B., Blake,C., Shibata,D., Danenberg,P.V. and Laird,P.W. (2000) MethyLight: A high-throughput assay to measure DNA methylation. Nucleic Acids Res. 28, E32.
-
(2000)
Nucleic Acids Res
, vol.28
-
-
Eads, C.A.1
Danenberg, K.D.2
Kawakami, K.3
Saltz, L.B.4
Blake, C.5
Shibata, D.6
Danenberg, P.V.7
Laird, P.W.8
-
19
-
-
17444437545
-
A real-time PCR assay for DNA-methylation using methylation-specific blockers
-
Cottrell,S.E., Distler,J., Goodman,N.S., Mooney,S.H., Kluth,A., Olek,A., Schwope,I., Tetzner,R., Ziebarth,H. et al. (2004) A real-time PCR assay for DNA-methylation using methylation-specific blockers. Nucleic Acids Res., 32, e10.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Cottrell, S.E.1
Distler, J.2
Goodman, N.S.3
Mooney, S.H.4
Kluth, A.5
Olek, A.6
Schwope, I.7
Tetzner, R.8
Ziebarth, H.9
-
20
-
-
0030825309
-
COBRA: A sensitive and quantitative DNA methylation assay
-
Xiong,Z. and Laird,P.W. (1997) COBRA: A sensitive and quantitative DNA methylation assay. Nucleic Acids Res., 25, 2532-2534.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2532-2534
-
-
Xiong, Z.1
Laird, P.W.2
-
21
-
-
0034949862
-
In-tube DNA methylation profiling by fluorescence melting curve analysis
-
Worm,J., Aggerholm,A. and Guldberg,P. (2001) In-tube DNA methylation profiling by fluorescence melting curve analysis. Clin. Chem., 47, 1183-1189.
-
(2001)
Clin. Chem
, vol.47
, pp. 1183-1189
-
-
Worm, J.1
Aggerholm, A.2
Guldberg, P.3
-
22
-
-
0036753290
-
DNA methylation: A profile of methods and applications
-
Fraga,M.F. and Esteller,M. (2002) DNA methylation: A profile of methods and applications. Biotechniques, 33, 632-649.
-
(2002)
Biotechniques
, vol.33
, pp. 632-649
-
-
Fraga, M.F.1
Esteller, M.2
-
23
-
-
0042386500
-
DNA methylation analysis techniques
-
Dahl,C. and Guldberg,P. (2003) DNA methylation analysis techniques. Biogerontology, 4, 233-250.
-
(2003)
Biogerontology
, vol.4
, pp. 233-250
-
-
Dahl, C.1
Guldberg, P.2
-
24
-
-
34548254913
-
Expression of S100A4 by a variety of cell types present in the tumor microenvironment of human breast cancer
-
Cabezon,T., Celis,J.E., Skibshoj,I., Klingelhofer,J., Grigorian,M., Gromov,P., Rank,F., Myklebust,J.H., Maelandsmo,G.M., Lukanidin,E. et al. (2007) Expression of S100A4 by a variety of cell types present in the tumor microenvironment of human breast cancer. Int. J. Cancer, 121, 1433-1444.
-
(2007)
Int. J. Cancer
, vol.121
, pp. 1433-1444
-
-
Cabezon, T.1
Celis, J.E.2
Skibshoj, I.3
Klingelhofer, J.4
Grigorian, M.5
Gromov, P.6
Rank, F.7
Myklebust, J.H.8
Maelandsmo, G.M.9
Lukanidin, E.10
-
25
-
-
34147221390
-
A homogeneous assay for analysis of FMR1 promoter methylation in patients with fragile X syndrome
-
Dahl,C., Grønskov,K., Larsen,L.A., Guldberg,P. and Brøndum-Nielsen,K. (2007) A homogeneous assay for analysis of FMR1 promoter methylation in patients with fragile X syndrome. Clin. Chem. 53, 790-793.
-
(2007)
Clin. Chem
, vol.53
, pp. 790-793
-
-
Dahl, C.1
Grønskov, K.2
Larsen, L.A.3
Guldberg, P.4
Brøndum-Nielsen, K.5
-
26
-
-
0033910579
-
Enhanced detection and distinction of RNA by enzymatic probe ligation
-
Nilsson,M., Barbany,G., Antson,D.O., Gertow,K. and Landegren,U. (2000) Enhanced detection and distinction of RNA by enzymatic probe ligation. Nat. Biotechnol., 18, 791-793.
-
(2000)
Nat. Biotechnol
, vol.18
, pp. 791-793
-
-
Nilsson, M.1
Barbany, G.2
Antson, D.O.3
Gertow, K.4
Landegren, U.5
-
27
-
-
0033569841
-
Delayed DNA joining at 3′ mismatches by human DNA ligases
-
Bhagwat,A.S., Sanderson,R.J. and Lindahl,T. (1999) Delayed DNA joining at 3′ mismatches by human DNA ligases. Nucleic Acids Res., 27 4028-4033.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4028-4033
-
-
Bhagwat, A.S.1
Sanderson, R.J.2
Lindahl, T.3
-
28
-
-
4344576453
-
+ -dependent DNA ligase from Melanoplus sanguinipes entomopoxvirus
-
+ -dependent DNA ligase from Melanoplus sanguinipes entomopoxvirus. Biochim. Biophys. Acta, 1701, 37-48.
-
(2004)
Biochim. Biophys. Acta
, vol.1701
, pp. 37-48
-
-
Lu, J.1
Tong, J.2
Feng, H.3
Huang, J.4
Afonso, C.L.5
Rock, D.L.6
Barany, F.7
Cao, W.8
-
29
-
-
33645455075
-
Imprinting defects on human chromosome 15
-
Horsthemke,B. and Buiting,K. (2006) Imprinting defects on human chromosome 15. Cytogenet. Genome Res., 113, 292-299.
-
(2006)
Cytogenet. Genome Res
, vol.113
, pp. 292-299
-
-
Horsthemke, B.1
Buiting, K.2
-
30
-
-
0000502460
-
The fragile X syndrome
-
Scriver,C.R, Beaudet,A.L, Sly,W.S. and Valle,D, eds, McGraw-Hill, New York, pp
-
Warren,S.T. and Sherman,S.L. (2001) The fragile X syndrome. In Scriver,C.R., Beaudet,A.L., Sly,W.S. and Valle,D. (eds), The Metabolic and Molecular Bases of Inherited Disease., McGraw-Hill, New York, pp. 1257-1289.
-
(2001)
The Metabolic and Molecular Bases of Inherited Disease
, pp. 1257-1289
-
-
Warren, S.T.1
Sherman, S.L.2
-
31
-
-
0037068360
-
DNA methylation and breast carcinogenesis
-
Widschwendter,M. and Jones,P.A. (2002) DNA methylation and breast carcinogenesis. Oncogene, 21, 5462-5482.
-
(2002)
Oncogene
, vol.21
, pp. 5462-5482
-
-
Widschwendter, M.1
Jones, P.A.2
-
32
-
-
3042825295
-
Quantitative multiplex methylation-specific PCR assay for the detection of promoter hypermethylation in multiple genes in breast cancer
-
Fackler,M.J., McVeigh,M., Mehrotra,J., Blum,M.A., Lange,J., Lapides,A., Garrett,E., Argani,P. and Sukumar,S. (2004) Quantitative multiplex methylation-specific PCR assay for the detection of promoter hypermethylation in multiple genes in breast cancer. Cancer Res., 64, 4442-4452.
-
(2004)
Cancer Res
, vol.64
, pp. 4442-4452
-
-
Fackler, M.J.1
McVeigh, M.2
Mehrotra, J.3
Blum, M.A.4
Lange, J.5
Lapides, A.6
Garrett, E.7
Argani, P.8
Sukumar, S.9
-
33
-
-
0032526094
-
Mapping of ER gene CpG island by methylation-specific polymerase chain reaction
-
Lapidus,R.G., Nass,S.J., Butash,K.A., Parl,F.F., Weitzman,S.A., Graff,J.G., Herman,J.G. and Davidson,N.E. (1998) Mapping of ER gene CpG island by methylation-specific polymerase chain reaction. Cancer Res. 58, 2515-2519.
-
(1998)
Cancer Res
, vol.58
, pp. 2515-2519
-
-
Lapidus, R.G.1
Nass, S.J.2
Butash, K.A.3
Parl, F.F.4
Weitzman, S.A.5
Graff, J.G.6
Herman, J.G.7
Davidson, N.E.8
-
34
-
-
0024297824
-
A ligase-mediated gene detection technique
-
Landegren,U., Kaiser,R., Sanders,J. and Hood,L. (1988) A ligase-mediated gene detection technique. Science, 241, 1077-1080.
-
(1988)
Science
, vol.241
, pp. 1077-1080
-
-
Landegren, U.1
Kaiser, R.2
Sanders, J.3
Hood, L.4
-
35
-
-
3543023204
-
Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification
-
Schouten,J.P., McElgunn,C.J., Waaijer,R., Zwijnenburg,D., Diepvens,F. and Pals,G. (2002) Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res., 30, e57.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Schouten, J.P.1
McElgunn, C.J.2
Waaijer, R.3
Zwijnenburg, D.4
Diepvens, F.5
Pals, G.6
-
36
-
-
33644861803
-
Accurate quantification of DNA methylation using combined bisulfite restriction analysis coupled with the Agilent 2100 Bioanalyzer platform
-
Brena,R.M., Auer,H., Kornacker,K., Hackanson,B., Raval,A., Byrd,J.C. and Plass,C. (2006) Accurate quantification of DNA methylation using combined bisulfite restriction analysis coupled with the Agilent 2100 Bioanalyzer platform. Nucleic Acids Res., 34, e17.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Brena, R.M.1
Auer, H.2
Kornacker, K.3
Hackanson, B.4
Raval, A.5
Byrd, J.C.6
Plass, C.7
-
37
-
-
0030697141
-
Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
-
Warnecke,P.M., Stirzaker,C., Melki,J.R., Millar,D.S., Paul,C.L. and Clark,S.J. (1997) Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA. Nucleic Acids Res. 25, 4422-4426.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4422-4426
-
-
Warnecke, P.M.1
Stirzaker, C.2
Melki, J.R.3
Millar, D.S.4
Paul, C.L.5
Clark, S.J.6
-
38
-
-
0030002989
-
Multiplex genotype determination at a large number of gene loci
-
Lin,Z., Cui,X. and Li,H. (1996) Multiplex genotype determination at a large number of gene loci. Proc. Natl Acad. Sci. USA, 93, 2582-2587.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 2582-2587
-
-
Lin, Z.1
Cui, X.2
Li, H.3
-
39
-
-
0035407651
-
Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters
-
Grunau,C., Clark,S.J. and Rosenthal,A. (2001) Bisulfite genomic sequencing: Systematic investigation of critical experimental parameters. Nucleic Acids Res., 29, E65.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Grunau, C.1
Clark, S.J.2
Rosenthal, A.3
-
40
-
-
34250669653
-
Recovery of bisulfite-converted genomic sequences in the methylation-sensitive QPCR
-
Munson,K., Clark,J., Lamparska-Kupsik,K. and Smith,S.S. (2007) Recovery of bisulfite-converted genomic sequences in the methylation-sensitive QPCR. Nucleic Acids Res., 35, 2893-2903.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2893-2903
-
-
Munson, K.1
Clark, J.2
Lamparska-Kupsik, K.3
Smith, S.S.4
-
41
-
-
0030471926
-
A modified and improved method for bisulphite based cytosine methylation analysis
-
Olek,A., Oswald,J. and Walter,J. (1996) A modified and improved method for bisulphite based cytosine methylation analysis. Nucleic Acids Res., 24, 5064-5066.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 5064-5066
-
-
Olek, A.1
Oswald, J.2
Walter, J.3
-
42
-
-
1442323788
-
Bisulfite conversion of genomic DNA for methylation analysis: Protocol simplification with higher recovery applicable to limited samples and increased throughput
-
Boyd,V.L. and Zon,G. (2004) Bisulfite conversion of genomic DNA for methylation analysis: Protocol simplification with higher recovery applicable to limited samples and increased throughput. Anal. Biochem., 326, 278-280.
-
(2004)
Anal. Biochem
, vol.326
, pp. 278-280
-
-
Boyd, V.L.1
Zon, G.2
-
43
-
-
24044464247
-
Methylation-specific MLPA (MS-MLPA): Simultaneous detection of CpG methylation and copy number changes of up to 40 sequences
-
Nygren,A.O., Ameziane,N., Duarte,H.M., Vijzelaar,R.N., Waisfisz,Q., Hess,C.J., Schouten,J.P. and Errami,A. (2005) Methylation-specific MLPA (MS-MLPA): Simultaneous detection of CpG methylation and copy number changes of up to 40 sequences. Nucleic Acids Res., 33, e128.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Nygren, A.O.1
Ameziane, N.2
Duarte, H.M.3
Vijzelaar, R.N.4
Waisfisz, Q.5
Hess, C.J.6
Schouten, J.P.7
Errami, A.8
|