Relationship between Chinese chive (Allium tuberosum) and its putative progenitor A. ramosum as assessed by random amplified polymorphic DNA (RAPD)

Documenting Domestication: New Genetic and Archaeological Paradigms

Volumn , Issue , 2006, Pages 134-142

  Blattner, Frank R ^a   Friesen, Nikolai ^b  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b UNIVERSITY OF OSNABRÜCK   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 37549000672     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (50)

1. Bachmann, K. 1994. Molecular markers in plant ecology. New Phytologist 126: 403-418.
2. Bachmann, K. 1997. Nuclear DNA markers in biosystematic research. Opera Botanica 132: 137-148.
3. Badr, A., K. Müller, R. Schäfer-Pregl, H. El Rabey, S. Effgen, H. H. Ibrahim, C. Pozzi, W. Rohde, and F. Salamini. 2000. On the origin and domestication history of barley (Hordeum vulgare). Molecular Biology and Evolution 17: 499-510.
4. Benter, T., S. Papadopoulos, M. Pape, M. Manns, and H. Poliwoda. 1995. Optimization and reproducibility of random amplified polymorphic DNA in humans. Analytical Biochemistry 230: 92-100.
5. Blattner, F. R. and A. G. Badani Méndez. 2001. RAPD data do not support a second centre of barley domestication in Morocco. Genetic Resources and Crop Evolution 48: 13-19.
6. Diamond, J. 1997. Guns, germs and steel: The fates of human societies. London: Jonathan Cape.
7. Dubouzet, J. G., K. Shinoda, and N. Murata. 1997. Phylogeny of Allium L. subgenus Rhizirideum (G. Don ex Koch) Wendelbo according to dot-blot hybridization with randomly amplified DNA probes. Theoretical and Applied Genetics 95: 1223-1228.
8. Eyre-Walker, A., R. L. Gaut, H. Hilton, D. L. Feldman, and B. S. Gaut. 1998. Investigation of the bottleneck leading to the domestication of maize. Proceedings of the National Academy of Sciences, USA 95: 4441-4446.
9. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
10. Freyre, R., R. Rios, L. Guzman, D. G. Debouck, and P. Gepts. 1996. Ecogeographic distribution of Phaseolus spp. (Fabaceae) in Bolivia. Economic Botany 50: 195-215.
11. Friesen, N. and F. R. Blattner. 2000. RAPD analysis reveals geographic differentiations within Allium choenoprasum L. (Alliaceae). Plant Biology 2: 297-305.
12. Friesen, N. and M. Klaas. 1998. Origin of some minor vegetatively propagated Allium crops studied with RAPD and GISH. Genetic Resources and Crop Evolution 45: 511-523.
13. Friesen, N., R. M. Fritsch, and K. Bachmann. 1997. Hybrid origin of some ornamental Alliums of subgenus Melanocrommyum verified with GISH and RAPD. Theoretical and Applied Genetics 95: 1229-1238.
14. Friesen, N., S. Pollner, K. Bachmann, and F. R. Blattner. 1999. RAPDs and noncoding chloroplast DNA reveal a single origin of the cultivated Allium fistulosum from A. altaicum (Alliaceae). American Journal of Botany 86: 554-562.
15. Friesen, N., R. M. Fritsch, and F. R. Blattner. In press. Phylogeny and new intrageneric classification of Allium (Alliaceae) based on nuclear rDNA ITS sequences. In Monocots: Comparative biology and evolution, J. T. Columbus, E. A. Friar, C.W. Hamilton, J. M. Porter, L. M. Prince, and M. G. Simpson (eds.). Claremont, Rancho Santa Ana Botanic Garden.
16. Fritsch, R. M., F. Matin, and M. Klaas. 2001. Allium vavilovii M. Popov et Vved. and a new Iranian species are the closest among the known relatives of the common onion A. cepa L. (Alliaceae). Genetic Resources and Crop Evolution 48: 401-408.
17. Gupta, M., Y.-S. Chyi, J. Romero-Severson, and J. L. Owen. 1994. Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theoretical and Applied Genetics 89: 998-1006.
18. Hanelt, P. 1988. Taxonomy as a tool for studying plant genetic resources. Die Kulturpflanze 36: 169-187.
19. Hanelt, P. 2001. Alliaceae. In Mansfeld's Encyclopedia of Agricultural and Horticultural Crops, P. Hanelt and Institute of Plant Genetics and Crop Plant Research (eds.), pp. 2250-2269. Berlin: Springer-Verlag.
20. Havey, M. J. 1992. Restriction enzyme analysis of the chloroplast and nuclear 45S ribosomal DNA of Allium sections Cepa and Phyllodon (Alliaceae). Plant Systematics and Evolution 183: 17-31.
21. Heun, M., R. Schäfer-Pregl, D. Klawan, R. Castagna, M. Accerbi, B. Borghi, and F. Salamini. 1997. Site of einkorn wheat domestication identified by DNA fingerprinting. Science 278: 1312-1314.
22. Iqbal, M. J., O. U. K. Reddy, K. M. El-Zik, and A. E. Pepper. 2001. A genetic bottleneck in the "evolution under domestication" of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theoretical and Applied Genetics 103: 547-554.
23. Isabel, N., J. Beaulieu, P. Theriault, and J. Bousquet. 1999. Direct evidence of biased gene diversity estimates from dominant random amplified polymorphic DNA (RAPD) fingerprints. Molecular Ecology 8: 477-483.
24. Karp, A., O. Seberg, and M. Buiatti. 1996. Molecular techniques in the assessment of botanical diversity. Annals of Botany 78: 143-148.
25. Kik, C., A. M. Samoylov, W. H. J. Verbeek, and L. W. D. van Raamsdonk. 1997. Mitochondrial DNA variation and crossability of leek (Allium porrum) and its wild relatives from the Allium ampeloprasum complex. Theoretical and Applied Genetics 94: 465-471.
26. Klaas, M. and N. Friesen. 2002. Molecular markers in Allium. In Allium Crop Science-Recent Advances, H. Rabinovich and L. Curah (eds.), pp. 159-185. Wallingford, UK: CABI Publishing.
27. Maass, H. I. and M. Klaas. 1995. Infraspecific differentiation of garlic (Allium sativum L.) by isozyme and RAPD markers. Theoretical and Applied Genetics 91: 89-97.
28. Mimura, M., K. Yasuda, and H. Yamaguchi. 2000. RAPD variation in wild, weedy and cultivated azuki beans in Asia. Genetic Resources and Crop Evolution 47: 603-610.
29. Mullis, K. B. and F. A. Faloona. 1987. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods in Enzymology 155: 335-350.
30. Nei, M. and W.-H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA 76: 5269-5273.
31. Rieseberg, L. H. 1996. Homology among RAPD fragments in interspecific comparisons. Molecular Ecology 5: 99-105.
32. Rohlf, F. J. 1998. NTSYSpc: Numerical taxonomy system. Version 1.8. Setauket, N.Y.: Exeter Publishing Ltd.
33. Salgado, A. G., P. Gepts, and D. G. Debouck. 1995. Evidence for two gene pools of the lima bean, Phaseolus lunatus L., in the Americas. Genetic Resources and Crop Evolution 42: 15-28.
34. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual, 2nd edition. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press.
35. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Journal of Molecular Evolution 4: 406-425.
36. Schaal, B. A. and K. M. Olsen. 2000. Gene genealogies and population variation in plants. Proceedings of the National Academy of Sciences, USA 97: 7024-7029.
37. Stearn, W. T. 1944. Nomenclature and synonymy of Allium odorum and A. tuberosum. Herbertia 11: 227-245.
38. Swofford, D. L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods), Version 4. Sunderland, Mass.: Sinauer Associates.
39. van Raamsdonk, L. W. D. 1995. The cytological and genetical mechanisms of plant domestication exemplified by four crop models. Botanical Reviews 61: 367-399.
40. van Raamsdonk, L. W. D., M. Vrielink-van Ginkel, and C. Kik. 2000. Phylogeny reconstruction and hybrid analysis in Allium subgenus Rhizirideum. Theoretical and Applied Genetics 100: 1000-1009.
41. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
42. Wawrosch, C., P. R. Malla, and B. Kopp. 2001. Micropropagation of Allium wallichii Kunth, a threatened medicinal plant of Nepal. In Vitro Cellular and Developmental Biology-Plant 37: 555-557.
43. Welsh, J. and J. McClelland. 1990. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 18: 7213-7218.
44. Williams, G. K., A. R. Kubelik, K. L. Livak, J. A. Rafalaski, and S. V. Tingey. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18: 6531-6535.
45. Wolfe, A. D. and A. Liston. 1998. Contribution of PCR-based methods to plant systematics and evolutionary biology. In Molecular systematics of plants II, D. E. Soltis, P. S. Soltis, and J. J. Doyle (eds.), pp. 43-86. Dordrecht, Netherlands: Kluwer Academic Publishers.
46. Wu, K.-S., R. Jones, L. Danneberger, and P. A. Scolnik. 1994. Detection of microsatellite polymorphisms without cloning. Nucleic Acids Research 22: 3257-3258.
47. Yang, L., J.-M. Xu, X.-L. Zhang, and H.-Q. Wan. 1998. Karyotypical studies of six species of the genus Allium. Acta Phytotaxonomica Sinica 36: 36-46.
48. Zietkiewicz, E., A. Rafalski, and D. Labuda. 1994. Genome fingerprinting by simple sequence (SSR)-anchored polymerase chain reaction amplification. Genomics 20: 176-183.
49. Zohary, D. 1999. Monophyletic vs. polyphyletic origin of the crops on which agriculture was founded in the Near East. Genetic Resources and Crop Evolution 46: 133-142.
50. Zohary, D. and M. Hopf. 2000. Domestication of plants in the Old World, 3rd Edition. Oxford, UK: Oxford University Press.