Lechevalieria xinjiangensis sp. nov., a novel actinomycete isolated from radiation-polluted soil in China

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 12, 2007, Pages 2819-2822

  Wang, Wei ^a   Zhang, Zhidong ^a   Tang, Qiyong ^a   Mao, Jun ^a   Wei, Dong ^a   Huang, Ying ^b   Liu, Zhiheng ^b   Shi, Yuhu ^a   Goodfellow, Michael ^c  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S;

ACTINOBACTERIA; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; CHINA; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC ANALYSIS; GENOTYPE; LECHEVALIERIA XINJIANGENSIS; MORPHOLOGICAL TRAIT; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; TAXONOMY; TYPE STRAIN;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY; SOIL POLLUTANTS, RADIOACTIVE;

LECHEVALIERIA;

EID: 37449023186     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65134-0     Document Type: Article

References (32)

1. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
2. 2 series in Nocardia brasiliensis. FEMS Microbiol Lett 41, 35-39.
3. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurements of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
4. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
5. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
6. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
7. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
8. Grund, E. & Kroppenstedt, R. M. (1989). Transfer of five Nocardiopsis species to the genus Saccharothrix Labeda et al. 1984. Syst Appl Microbiol 12, 267-274.
9. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
10. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
11. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
13. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
14. Labeda, D. P. (1986). Transfer of "Nocardia aerocolonigenes" (Shinobu and Kawato 1960) Pridham 1970 into the genus Saccharothrix Labeda, Testa, Lechevalier, and Lechevalier 1984 as Saccharothrix aerocolonigenes sp. nov. Int J Syst Bacteriol 36, 109-110.
15. Labeda, D. P. & Kroppenstedt, R. M. (2000). Phylogenetic analysis of Sacchrothrix and related taxa: proposal for Actinosynnemataceae fam. nov. Int J Syst Evol Microbiol 50, 331-336.
16. Labeda, D. P., Hatano, K., Kroppenstedt, R. M. & Tamura, T. (2001). Revival of the genus Lentzea and proposal for Lechevalieria gen. nov. Int J Syst Evol Microbiol 51, 1045-1050.
17. Lechevalier, H. A. & Lechevalier, M. P. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
18. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, Special Publication 6, pp. 227-291. Arlington, VA: Society for Industrial Microbiology.
19. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
20. Marmur, J. & Doty, P. (1962). Determination of base composition of deoxyribonucleic acid from its denaturation temperature. J Mol Biol 5, 109-118.
21. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
23. Mordarska, H., Mordarski, M. & Goodfellow, M. (1972). Chemotaxonomic characters and classification of some nocardioform bacteria. J Gen Microbiol 71, 77-86.
24. Saitou, N. & Nei, M. (1987). The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
25. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
26. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
27. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
28. Thompson, J. D., Gibson, T. J., Plewniak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
29. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
30. Xie, Q., Wang, Y., Huang, Y., Wu, Y, Ba, F. & Liu, Z. (2002). Description of Lentzea flaviverrucosa sp. nov. and transfer of Saccharothrix aerocolonigenes subsp. staurosporea to Lentzea albida. Int J Syst Evol Microbiol 52, 1815-1820.
31. Yassin, A. F., Rainey, F. A., Brzezinka, H., Jahnke, K.-D., Weissbrodt H., Budzikieweicz, H., Stackebrandt, E. & Schaal, K. P. (1995). Lentzea gen. nov., a new genus of the order Actinomycetales. Int J Syst Bacteriol 45, 357-363.
32. Zhang, J., Xie, Q., Liu, Z. & Goodfellow, M. (2007). Lechevalieria fradiae sp. nov., a novel actinomycete isolated from soil in China. Int J Syst Evol Microbiol 57, 832-836.