Prediction of the partitioning behaviour of proteins in aqueous two-phase systems using only their amino acid composition

Journal of Chromatography A

Volumn 1178, Issue 1-2, 2008, Pages 134-144

  Salgado, J Cristian ^a   Andrews, Barbara A ^a   Ortuzar, Maria Fernanda ^a   Asenjo, Juan A ^a  

^a UNIVERSITY OF CHILE   (Chile)

Author keywords

Amino acid composition; Aqueous two phase systems; Correlation for partition coefficient; Mathematical model

Indexed keywords

AMINO ACIDS; CONCENTRATION (PROCESS); CORRELATION METHODS; HYDROPHOBICITY; MATHEMATICAL MODELS; POLYETHYLENE GLYCOLS;

AQUEOUS TWO PHASE SYSTEMS; PARTITION COEFFICIENTS;

PROTEINS;

CITRIC ACID; DEXTRAN; MACROGOL; PHOSPHATE; SODIUM CHLORIDE; SULFATE;

AMINO ACID COMPOSITION; AQUEOUS SOLUTION; ARTICLE; HYDROPHOBICITY; MATHEMATICAL MODEL; PARTITION COEFFICIENT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE;

AMINO ACIDS; HYDROPHOBICITY; MATHEMATICS; MODELS, CHEMICAL; PROTEINS; SURFACE PROPERTIES; WATER;

EID: 37449019890     PISSN: 00219673     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chroma.2007.11.064     Document Type: Article

References (65)

1. Rito-Palomares M. J. Chromatogr. B 807 (2004) 3
2. Sasakawa S., and Walter H. Biochemistry 11 (1972) 2760
3. In: Abelson J., and Simon M. (Eds). Aqueous Two-phase Systems in Methods in Enzymology (1994), Academic Press, New York
4. Johansson G. Acta Chem. Scand. B 28 (1974) 873
5. Johansson G. Mol. Cell Biochem. 4 (1974) 169
6. Asenjo J.A., Schmidt A.S., Hachem F., and Andrews B.A. J. Chromatogr. A 668 (1994) 47
7. Berggren K., Johansson H.-O., and Tjerneld F. J. Chromatogr. A 718 (1995) 67
8. Hachem F., Andrews B.A., and Asenjo J.A. Enzyme Microb. Technol. 19 (1996) 507
9. Shanbhag V.P. In: Abelson J., and Simon M. (Eds). Estimation of Surface Hydrophobicity of Proteins by Partitioning (1994), Academic Press, San Diego, CA 254
10. Shanbhag V.P., and Axelsson C.G. Eur. J. Biochem. 60 (1975) 17
11. Shanbhag V.P., and Johansson G. Biochem. Biophys. Res. Commun. 61 (1974) 1141
12. Eiteman M.A., and Gainer J.L. Biotechnol. Prog. 6 (1990) 479
13. Kuboi R., Tanaka H., and Komasawa I. Proceedings of the International Solvent Extraction Conference. Kyoto, Japan (1991)
14. Zaslavsky B.Y., Mestechkina N.M., Miheeva L.M., and Rogozhin S.V. J. Chromatogr. 240 (1982) 21
15. Zaslavsky B.Y., Miheeva L.M., Gasanova G.Z., and Mahmudov A.U. J. Chromatogr. 403 (1987) 123
16. Zaslavsky B.Y., Miheeva L.M., and Rogozhin S.V. J. Chromatogr. 212 (1981) 13
17. Forciniti D., Hall C.K., and Kula M.R. Bioseparation 2 (1991) 115
18. Lin D.-Q., Wu Y.-T., Mei L.-H., Zhu Z.-Q., and Yao S.-J. Chem. Eng. Sci. 58 (2003) 2963
19. Andrews B.A., Schmidt A.S., and Asenjo J.A. Biotechnol. Bioeng. 90 (2005) 380
20. Salgado J.C., Rapaport I., and Asenjo J.A. J. Chromatogr. A 1075 (2005) 133
21. Berggren K., Wolf A., Asenjo J.A., Andrews B.A., and Tjerneld F. Biochim. Biophys. Acta 1596 (2002) 253
22. Lienqueo M.E., Mahn A., and Asenjo J.A. J. Chromatogr. A 978 (2002) 71
23. Lienqueo M.E., Mahn A., Vasquez L., and Asenjo J.A. J. Chromatogr. A 1009 (2003) 189
24. Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. Nucleic Acids Res. 28 (2000) 235
25. Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J., Natale D.A., O'Donovan C., Redaschi N., and Yeh L.S. Nucleic Acids Res. 33 (2005) 154
26. Salgado J.C., Rapaport I., and Asenjo J.A. J. Chromatogr. A 1098 (2005) 44
27. Malmquist G., Nilsson U.H., Norrman M., Skarp U., Stromgren M., and Carredano E. J. Chromatogr. A 1115 (2006) 164
28. Aboderin A.A. Int. J. Biochem. 2 (1971) 537
29. Abraham D.J., and Leo A.J. Proteins 2 (1987) 130
30. Black S.D., and Mould D.R. Anal. Biochem. 193 (1991) 72
31. Browne C.A., Bennett H.P., and Solomon S. Anal. Biochem. 124 (1982) 201
32. Bull H.B., and Breese K. Arch. Biochem. Biophys. 161 (1974) 665
33. Chothia C. J. Mol. Biol. 105 (1976) 1
34. Eisenberg D., Schwarz E., Komaromy M., and Wall R. J. Mol. Biol. 179 (1984) 125
35. Erikkson K.O. In: Janson J.C., and Ryden L. (Eds). Protein Purification: Principles, High-resolution Methods, and Applications (1998), Wiley-Liss, New York
36. Fauchere J.L., and Pliska V.E. Eur. J. Med. Chem. 18 (1983) 369
37. Grantham R. Science 185 (1974) 862
38. Guy H.R. Biophys. J. 47 (1985) 61
39. Hopp T.P., and Woods K.R. Proc. Natl. Acad. Sci. U.S.A. 78 (1981) 3824
40. Janin J. Nature 277 (1979) 491
41. Jesior J.C. J. Protein Chem. 19 (2000) 93
42. Kyte J., and Doolittle R.F. J. Mol. Biol. 157 (1982) 105
43. Manavalan P., and Ponnuswamy P.K. Nature 275 (1978) 673
44. Miyazawa S., and Jernigan R. Macromolecules 18 (1985) 3
45. Parker J.M., Guo D., and Hodges R.S. Biochemistry 25 (1986) 5425
46. Rao M.I.K., and Argos P. Biochim. Biophys. Acta 869 (1986) 197
47. Rose G.D., Geselowitz A.R., Lesser G.J., Lee R.H., and Zehfus M.H. Science 229 (1985) 834
48. Roseman M.A. J. Mol. Biol. 200 (1988) 513
49. Sweet R.M., and Eisenberg D. J. Mol. Biol. 171 (1983) 479
50. Wertz D.H., and Scheraga H.A. Macromolecules 11 (1978) 9
51. Wilson K.J., Honegger A., Stotzel R.P., and Hughes G.J. Biochem. J. 199 (1981) 31
52. Wolfenden R., Andersson L., Cullis P.M., and Southgate C.C. Biochemistry 20 (1981) 849
53. Zimmerman J.M., Eliezer N., and Simha R. J. Theor. Biol. 21 (1968) 170
54. Cowan R., and Whittaker R.G. Pept. Res. 3 (1990) 75
55. Meek J.L. Proc. Natl. Acad. Sci. U.S.A. 77 (1980) 1632
56. Welling G.W., Weijer W.J., van der Zee R., and Welling-Wester S. FEBS Lett. 188 (1985) 215
57. Albertsson P.-A. Partition of Cell Particles and Macromolecules (1986), Wiley, New York
58. Kula M.R. Bioseparation 1 (1990) 181
59. Franco T.T., Andrews A.T., and Asenjo J.A. Biotechnol. Bioeng. 49 (1996) 309
60. Frishman D., and Argos P. Proteins 23 (1995) 566
61. Miller S., Janin J., Lesk A.M., and Chothia C. J. Mol. Biol. 196 (1987) 641
62. Chou K.C., and Zhang C.T. Crit. Rev. Biochem. Mol. Biol. 30 (1995) 275
63. Zhou G.P. J. Protein Chem. 17 (1998) 729
64. Zhou G.P., and Assa-Munt N. Proteins 44 (2001) 57
65. Mardia K.V., Kent J.T., and Bibby J.M. Multivariate Analysis (1979), Academic Press, London