메뉴 건너뛰기




Volumn 147, Issue 2, 2008, Pages 257-264

Real-time RT-PCR assay for rapid and specific detection of classical swine fever virus: Comparison of SYBR Green and TaqMan MGB detection methods using novel MGB probes

Author keywords

Classical swine fever virus; Pestivirus; Real time PCR; SYBR Green; TaqMan

Indexed keywords

DYE;

EID: 37449005734     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2007.09.017     Document Type: Article
Times cited : (37)

References (32)
  • 1
    • 0036219399 scopus 로고    scopus 로고
    • Minor groove binder-conjugated DNA probes for quantitative DNA detection by hybridization-triggered fluorescence
    • Afonina I.A., Reed M.W., Lusby E., Shishkina I.G., and Belousov Y.S. Minor groove binder-conjugated DNA probes for quantitative DNA detection by hybridization-triggered fluorescence. BioTechniques 32 (2002) 940-949
    • (2002) BioTechniques , vol.32 , pp. 940-949
    • Afonina, I.A.1    Reed, M.W.2    Lusby, E.3    Shishkina, I.G.4    Belousov, Y.S.5
  • 2
    • 0035024833 scopus 로고    scopus 로고
    • Highly sensitive one-tube RT-PCR and microplate hybridisation assay for the detection and for the discrimination of classical swine fever virus from other pestiviruses
    • Barlič-Maganja D., and Grom J. Highly sensitive one-tube RT-PCR and microplate hybridisation assay for the detection and for the discrimination of classical swine fever virus from other pestiviruses. J. Virol. Methods 95 (2001) 101-110
    • (2001) J. Virol. Methods , vol.95 , pp. 101-110
    • Barlič-Maganja, D.1    Grom, J.2
  • 3
    • 0030636428 scopus 로고    scopus 로고
    • Molecular diagnostic for dairy-borne pathogens
    • Batt C.A. Molecular diagnostic for dairy-borne pathogens. J. Dairy Sci. 80 (1997) 220-229
    • (1997) J. Dairy Sci. , vol.80 , pp. 220-229
    • Batt, C.A.1
  • 5
    • 0025785485 scopus 로고
    • Specific sequence amplification of bovine virus diarrhea virus (BVDV) and hog cholera virus and sequencing of BVDV nucleic acid
    • Boye M., Kamstrup S., and Dalsgaard K. Specific sequence amplification of bovine virus diarrhea virus (BVDV) and hog cholera virus and sequencing of BVDV nucleic acid. Vet. Microbiol. 29 (1991) 1-13
    • (1991) Vet. Microbiol. , vol.29 , pp. 1-13
    • Boye, M.1    Kamstrup, S.2    Dalsgaard, K.3
  • 6
    • 0029944585 scopus 로고    scopus 로고
    • Differentiation of CSFV from ruminant pestiviruses by reverse transcription and polymerase chain reaction (RT-PCR)
    • Canal C.W., Hotzel I., de Almeida L.L., Roehe P.M., and Masuda A. Differentiation of CSFV from ruminant pestiviruses by reverse transcription and polymerase chain reaction (RT-PCR). Vet. Microbiol. 48 (1996) 373-379
    • (1996) Vet. Microbiol. , vol.48 , pp. 373-379
    • Canal, C.W.1    Hotzel, I.2    de Almeida, L.L.3    Roehe, P.M.4    Masuda, A.5
  • 7
    • 0028833380 scopus 로고
    • Rapid detection of bovine viral diarrhea virus by using RNA extracted directly from assorted specimens and a one-tube reverse transcription PCR assay
    • Hamel A.L., Wasylyshen M.D., and Nayar G.P. Rapid detection of bovine viral diarrhea virus by using RNA extracted directly from assorted specimens and a one-tube reverse transcription PCR assay. J. Clin. Microbiol. 33 (1995) 287-291
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 287-291
    • Hamel, A.L.1    Wasylyshen, M.D.2    Nayar, G.P.3
  • 8
    • 15744381713 scopus 로고
    • Kinetic PCR analysis: real-time monitoring of DNA amplification reactions
    • Higuchi R., Fockler C., Dollinger G., and Watson R. Kinetic PCR analysis: real-time monitoring of DNA amplification reactions. Biotechnology 11 (1993) 1026-1030
    • (1993) Biotechnology , vol.11 , pp. 1026-1030
    • Higuchi, R.1    Fockler, C.2    Dollinger, G.3    Watson, R.4
  • 9
    • 27744546068 scopus 로고    scopus 로고
    • Validation of real-time RT-PCR assay for sensitive and specific detection of classical swine fever
    • Hoffmann B., Beer M., Schelp C., Schirrmeier H., and Depner K. Validation of real-time RT-PCR assay for sensitive and specific detection of classical swine fever. J. Virol. Methods 130 (2005) 36-44
    • (2005) J. Virol. Methods , vol.130 , pp. 36-44
    • Hoffmann, B.1    Beer, M.2    Schelp, C.3    Schirrmeier, H.4    Depner, K.5
  • 10
    • 0028189715 scopus 로고
    • Rapid characterization of new pestivirus strains by direct sequencing of PCR-amplified cDNA from the 5′ noncoding region
    • Hofmann M.A., Brechtbuhl K., and Stauber N. Rapid characterization of new pestivirus strains by direct sequencing of PCR-amplified cDNA from the 5′ noncoding region. Arch. Virol. 139 (1994) 217-229
    • (1994) Arch. Virol. , vol.139 , pp. 217-229
    • Hofmann, M.A.1    Brechtbuhl, K.2    Stauber, N.3
  • 12
    • 0027409394 scopus 로고
    • Presumptive diagnostic differentiation of hog cholera virus from bovine viral diarrhea and border disease viruses by using a cDNA nested-amplification approach
    • Katz J.B., Ridpath J.F., and Bolin S.R. Presumptive diagnostic differentiation of hog cholera virus from bovine viral diarrhea and border disease viruses by using a cDNA nested-amplification approach. J. Clin. Microbiol. 31 (1993) 565-568
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 565-568
    • Katz, J.B.1    Ridpath, J.F.2    Bolin, S.R.3
  • 15
    • 0242362789 scopus 로고    scopus 로고
    • Real-time PCR for simultaneous detection and genotyping of bovine viral diarrhea virus
    • Letellier C., and Kerkhofs P. Real-time PCR for simultaneous detection and genotyping of bovine viral diarrhea virus. J. Virol. Methods 114 (2003) 21-27
    • (2003) J. Virol. Methods , vol.114 , pp. 21-27
    • Letellier, C.1    Kerkhofs, P.2
  • 16
  • 17
    • 1642318064 scopus 로고    scopus 로고
    • Real-time PCR in the microbiology laboratory
    • Mackay I.M. Real-time PCR in the microbiology laboratory. Clin. Microbiol. Infect. 10 (2004) 190-212
    • (2004) Clin. Microbiol. Infect. , vol.10 , pp. 190-212
    • Mackay, I.M.1
  • 18
    • 0031802084 scopus 로고    scopus 로고
    • A novel approach to the detection of classical swine fever virus by RT-PCR with a fluorogenic probe (TaqMan)
    • McGoldrick A., Lowings J.P., Ibata G., Sands J.J., Belak S., and Paton D.J. A novel approach to the detection of classical swine fever virus by RT-PCR with a fluorogenic probe (TaqMan). J. Virol. Methods 72 (1998) 125-135
    • (1998) J. Virol. Methods , vol.72 , pp. 125-135
    • McGoldrick, A.1    Lowings, J.P.2    Ibata, G.3    Sands, J.J.4    Belak, S.5    Paton, D.J.6
  • 19
    • 0032954959 scopus 로고    scopus 로고
    • Closed one-tube reverse transcription nested polymerase chain reaction for the detection of pestiviral RNA with fluorescent probes
    • McGoldrick A., Bensaude E., Ibata G., Sharp G., and Paton D.J. Closed one-tube reverse transcription nested polymerase chain reaction for the detection of pestiviral RNA with fluorescent probes. J. Virol. Methods 79 (1999) 85-95
    • (1999) J. Virol. Methods , vol.79 , pp. 85-95
    • McGoldrick, A.1    Bensaude, E.2    Ibata, G.3    Sharp, G.4    Paton, D.J.5
  • 21
    • 0037291996 scopus 로고    scopus 로고
    • Evaluation of automated RT-PCR to accelerate the laboratory diagnosis of foot-and-mouth disease virus
    • Reid S.M., Grierson S.S., Ferris N.P., Hutchings G.H., and Alexandersen S. Evaluation of automated RT-PCR to accelerate the laboratory diagnosis of foot-and-mouth disease virus. J. Virol. Methods 107 (2003) 129-139
    • (2003) J. Virol. Methods , vol.107 , pp. 129-139
    • Reid, S.M.1    Grierson, S.S.2    Ferris, N.P.3    Hutchings, G.H.4    Alexandersen, S.5
  • 22
    • 0030763387 scopus 로고    scopus 로고
    • Comparison of the complete genomic sequence of the BDV, BD31, to other pestiviruses
    • Ridpath J.F., and Bolin S.R. Comparison of the complete genomic sequence of the BDV, BD31, to other pestiviruses. Virus Res. 50 (1997) 237-243
    • (1997) Virus Res. , vol.50 , pp. 237-243
    • Ridpath, J.F.1    Bolin, S.R.2
  • 23
    • 0037232059 scopus 로고    scopus 로고
    • Rapid detection of classical swine fever virus by a portable real-time reverse transcriptase PCR assay
    • Risatti G.R., Callahan J.D., Nelson W.M., and Borca M.V. Rapid detection of classical swine fever virus by a portable real-time reverse transcriptase PCR assay. J. Clin. Microbiol. 41 (2003) 500-505
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 500-505
    • Risatti, G.R.1    Callahan, J.D.2    Nelson, W.M.3    Borca, M.V.4
  • 25
    • 0031039588 scopus 로고    scopus 로고
    • Detection and identification of ruminant and porcine pestiviruses by nested amplification of 5′ untranslated cDNA regions
    • Sandvik T., Paton D.J., and Lowings J.P. Detection and identification of ruminant and porcine pestiviruses by nested amplification of 5′ untranslated cDNA regions. J. Virol. Methods 64 (1997) 43-56
    • (1997) J. Virol. Methods , vol.64 , pp. 43-56
    • Sandvik, T.1    Paton, D.J.2    Lowings, J.P.3
  • 26
    • 0025044781 scopus 로고
    • Specific sequence amplification of bovine viral diarrhoea virus nucleic acid
    • Schroeder B.A., and Balassu-Chan T.C. Specific sequence amplification of bovine viral diarrhoea virus nucleic acid. Arch. Virol. 111 (1990) 239-246
    • (1990) Arch. Virol. , vol.111 , pp. 239-246
    • Schroeder, B.A.1    Balassu-Chan, T.C.2
  • 27
    • 0028839790 scopus 로고
    • A nested PCR assay to differentiate pestiviruses
    • Sullivan D.G., and Akkina R.K. A nested PCR assay to differentiate pestiviruses. Virus Res. 8 (1995) 231-239
    • (1995) Virus Res. , vol.8 , pp. 231-239
    • Sullivan, D.G.1    Akkina, R.K.2
  • 28
    • 1842788544 scopus 로고    scopus 로고
    • Genetic typing of bovine viral diarrhoea virus: most Slovenian isolates are of genotypes 1d and 1f
    • Toplak I., Sandvik T., Barlič-Maganja D., Grom J., and Paton D.J. Genetic typing of bovine viral diarrhoea virus: most Slovenian isolates are of genotypes 1d and 1f. Vet. Microbiol. 99 (2004) 175-185
    • (2004) Vet. Microbiol. , vol.99 , pp. 175-185
    • Toplak, I.1    Sandvik, T.2    Barlič-Maganja, D.3    Grom, J.4    Paton, D.J.5
  • 29
    • 0041047948 scopus 로고    scopus 로고
    • Genetic identification of pestivirus strain Frijters as a BDV from pigs
    • Vilček S., and Belak S. Genetic identification of pestivirus strain Frijters as a BDV from pigs. J. Virol. Methods 60 (1996) 103-108
    • (1996) J. Virol. Methods , vol.60 , pp. 103-108
    • Vilček, S.1    Belak, S.2
  • 30
    • 0028083981 scopus 로고
    • Pestivirus isolates from pigs, cattle and sheep can be allocated into at least three genogroups using PCR and restriction endonuclease analysis
    • Vilček S., Herring A.J., Herring J.A., Nettleton P.F., Lowings J.P., and Paton D.J. Pestivirus isolates from pigs, cattle and sheep can be allocated into at least three genogroups using PCR and restriction endonuclease analysis. Arch. Virol. 136 (1994) 309-323
    • (1994) Arch. Virol. , vol.136 , pp. 309-323
    • Vilček, S.1    Herring, A.J.2    Herring, J.A.3    Nettleton, P.F.4    Lowings, J.P.5    Paton, D.J.6
  • 32
    • 0027157211 scopus 로고
    • Detection of hog cholera virus and differentiation from other pestiviruses by polymerase chain reaction
    • Wirtz B., Tratschin J.D., Muller H.K., and Mitchell D.B. Detection of hog cholera virus and differentiation from other pestiviruses by polymerase chain reaction. J. Clin. Microbiol. 31 (1993) 1148-1154
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 1148-1154
    • Wirtz, B.1    Tratschin, J.D.2    Muller, H.K.3    Mitchell, D.B.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.