Genetic typing of recent classical swine fever virus isolates from Croatia

Veterinary Microbiology

Volumn 96, Issue 1, 2003, Pages 25-33

  Jemersic L ^a   Greiser Wilke, I ^b   Barlic Maganja D ^c   Lojkic M ^a   Madic J ^d   Terzic S ^a   Grom, J ^c  

^a CROATIAN VETERINARY INSTITUTE   (Croatia)

^b UNIVERSITY OF VETERINARY MEDICINE HANNOVER   (Germany)

^c UNIVERSITY OF LJUBLJANA   (Slovenia)

^d UNIVERSITY OF ZAGREB   (Croatia)

Author keywords

Classical swine fever virus; Croatian isolates; Genetic typing

Indexed keywords

GLYCOPROTEIN;

ARTICLE; CONTROLLED STUDY; CROATIA; EPIZOOTIOLOGY; EUROPE; GENOMICS; NONHUMAN; SWINE; SWINE DISEASE; VIRUS GENE; VIRUS ISOLATION;

CLASSICAL SWINE FEVER VIRUS; SUS SCROFA; SUS SCROFA DOMESTICA;

EID: 0141456037     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1135(03)00200-1     Document Type: Article

References (22)

1. Becher P., Orlich M., Shannon A.D., Horner G., König M., Thiel H.-J. Phylogenetic analysis of pestiviruses from domestic and wild ruminants. J. Gen. Virol. 78:1997;1357-1366.
2. Edwards S., Fukusho A., Lefevre P.-C., Lipowski A., Pejsak Z., Roehe P., Westergaard J. Classical swine fever: the global situation. Vet. Microbiol. 73:2000;103-119.
3. Felsenstein J. Phylip: phylogeny inference package (version 3.5c). Cladistics. 5:1989;164-166.
4. Fritzemeier, J., Greiser-Wilke, I., Teuffert, J., Moennig, V., CSF in German wild boar: characterisation of CSF virus isolates and epidemiological links to CSF in German domestic pigs, Report on the Seminar on the Control of CSF and the Evaluation of the Interlaboratory Comparison Test. Jihlava, Czech Republic, 1998, pp. 66-69.
5. Greiser-Wilke I., Depner K., Fritzemeier J., Haas L., Moennig V. Application of a computer program for genetic typing of classical swine fever virus isolates from Germany. J. Virol. Meth. 75:1998;141-150.
6. Greiser-Wilke I., Zimmermann B., Fritzemeier J., Floegel G., Moennig V. Structure and presentation of a World Wide Web database of CSF virus isolates held at the EU reference laboratory. Vet. Microbiol. 73:2000;131-136.
7. Heinz, F.X., Collet, M.S., Purcell, R.H., Gould, E.A., Howard, C.R., Houghton, M., Moormann, R.J.M., Rice, C.M., Thiel, H.J., Family flaviviridae. In: van Regenmortel, M.H.V., Fauquet, C.M., Bishop, D.H.L., Carstens, E.B., Estes, M.K., Lemon, S.M., Maniloff, J., Mayo, M.A., McGeoch, D.J., Pringle, C.R., Wickner, R.B. (Eds.), Virus Taxonomy, Classification and Nomenclature of Viruses. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, San Francisco, New York, Boston, London, Sydney, Tokyo, 2000, pp. 859-878.
8. Hofmann M.A., Brechtbuhl K., Stauber N. Rapid characterization of new pestivirus strains by direct sequencing of PCR amplified cDNA from the 5′-non-coding region. Arch. Virol. 139:1994;219-229.
9. Laddomada A. Incident and control of CSF in wild boar in Europe. Vet. Microbiol. 73:2000;121-130.
10. Lowings P., Ibata G., Needham J., Paton D. Classical swine fever virus diversity and evolution. J. Gen. Virol. 77:1996;1311-1321.
11. Lowings P., Ibata G., De Mia G.M., Rutili D., Paton D. Classical swine fever in Sardinia: epidemiology of recent outbreaks. Epidemiol. Infect. 122:1999;553-559.
12. Meyers G., Thiel H.J. Molecular characterization of pestiviruses. Adv. Virus Res. 47:1996;58-118.
13. Page R.D.M. TREEVIEW: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358.
14. Paton D.J., McGoldrick A., Greiser-Wilke I., Parchariyanon S., Song J.-Y., Liou P.P., Stadejek T., Lowings L.P., Björklund H., Belak S. Genetic typing of classical swine fever virus. Vet. Microbiol. 73:2000;137-157.
15. Ridpath J.F., Bolin S.R., Dubovi E.J. Segregation of bovine viral diarrhea virus into genotypes. Virology. 205:1994;66-74.
16. Rhouds, D.D., Roufa, D.J., 1991. Shareware Program Obtained from EMBL. Heidelberg, Germany, Sequaid 3.81, 1991.
17. Ruggli N., Tratschin J.D., Mittelholzer C., Hofmann M.A. Nucleotide sequence of classical swine fever virus strain Alfort/187 and transcription of infectious RNA from stably cloned full-length cDNA. J. Virol. 70:1996;3478-3487.
18. Sandvik T., Drew T., Paton D. CSF virus in East Anglia: from where? Vet. Rec. 147:2000;251.
19. Stadejek T., Vilèek Š., Lowings J.P., Ballagi-Pordany A., Paton D.J., Belak S. Genetic heterogeneity of classical swine fever virus in central Europe. Virus Res. 52:1997;195-204.
20. Strimmer K., von Haeseler A. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. E. 13:1996;964-969.
21. Thompson J.D., Higgins D.G., Gibson T.J. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting. Nucl. Acids Res. 22:1994;4673-4680.
22. Vilček Š., Stadejek T., Ballagi Pordany A., Lowings J.P., Paton D.J., Belak S. Genetic variability of classical swine fever virus. Virus Res. 43:1996;137-147.